Wall clock time and date at job start Tue Mar 31 2020 09:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47176 * 2 1 4 4 H 1.08998 * 109.49349 * 55.02752 * 3 2 1 5 5 C 1.53098 * 109.47660 * 175.05945 * 3 2 1 6 6 C 1.53181 * 109.15964 * 177.58816 * 5 3 2 7 7 H 1.09002 * 109.54332 * 62.88336 * 6 5 3 8 8 C 1.50697 * 109.54393 * 183.14785 * 6 5 3 9 9 O 1.21280 * 119.99712 * 359.56085 * 8 6 5 10 10 N 1.34767 * 120.00295 * 179.55741 * 8 6 5 11 11 C 1.39470 * 120.00223 * 175.17485 * 10 8 6 12 12 C 1.38597 * 119.58111 * 185.23074 * 11 10 8 13 13 C 1.40810 * 118.79529 * 179.97438 * 12 11 10 14 14 C 1.41541 * 120.99381 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99755 * 149.49785 * 14 13 12 16 16 C 1.40031 * 120.00513 * 329.49775 * 14 13 12 17 17 N 1.30741 * 120.00523 * 167.66501 * 16 14 13 18 18 Si 1.86804 * 119.99545 * 347.66215 * 16 14 13 19 19 H 1.48495 * 109.46976 * 92.45167 * 18 16 14 20 20 H 1.48497 * 109.47079 * 212.45056 * 18 16 14 21 21 H 1.48496 * 109.47127 * 332.45020 * 18 16 14 22 22 C 1.41175 * 118.01086 * 359.97438 * 13 12 11 23 23 C 1.37594 * 119.01173 * 0.02562 * 22 13 12 24 24 N 1.32086 * 121.10694 * 359.73495 * 23 22 13 25 25 C 1.53177 * 109.03825 * 303.01821 * 6 5 3 26 26 C 1.53088 * 109.16354 * 56.98064 * 25 6 5 27 27 O 1.42900 * 109.41609 * 302.39238 * 26 25 6 28 28 H 1.09002 * 109.47135 * 300.00730 * 1 2 3 29 29 H 1.09006 * 109.46941 * 60.00255 * 1 2 3 30 30 H 1.08999 * 109.47801 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46727 * 239.99293 * 2 1 3 32 32 H 1.08997 * 109.46961 * 119.99986 * 2 1 3 33 33 H 1.08995 * 109.52190 * 57.68513 * 5 3 2 34 34 H 1.08996 * 109.51801 * 297.48960 * 5 3 2 35 35 H 0.97003 * 120.00557 * 355.16991 * 10 8 6 36 36 H 1.08002 * 120.60291 * 0.02562 * 12 11 10 37 37 H 0.96998 * 119.99947 * 180.02562 * 17 16 14 38 38 H 1.07998 * 120.49356 * 180.02562 * 22 13 12 39 39 H 1.07993 * 119.44563 * 179.97438 * 23 22 13 40 40 H 1.08995 * 109.52096 * 297.07402 * 25 6 5 41 41 H 1.09000 * 109.52128 * 176.88861 * 25 6 5 42 42 H 1.09004 * 109.48051 * 182.41198 * 26 25 6 43 43 H 1.09000 * 109.48998 * 62.37967 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6060 1.9817 0.8420 5 6 3.5659 1.4444 0.1243 6 6 4.0735 2.8884 0.0629 7 1 3.6801 3.4495 0.9106 8 6 5.5798 2.8955 0.1068 9 8 6.1890 1.8500 0.1880 10 7 6.2500 4.0636 0.0558 11 6 7.6374 4.0785 0.1976 12 6 8.3065 5.2910 0.2529 13 6 9.7072 5.2867 0.3968 14 6 10.4374 6.4977 0.4579 15 1 11.3529 6.5480 1.0286 16 6 9.9728 7.6305 -0.2216 17 7 10.5009 8.8014 0.0220 18 14 8.5983 7.4687 -1.4763 19 1 7.2912 7.7014 -0.8113 20 1 8.7911 8.4721 -2.5539 21 1 8.6202 6.1039 -2.0611 22 6 10.3615 4.0384 0.4783 23 6 9.6117 2.8865 0.4140 24 7 8.2982 2.9337 0.2833 25 6 3.5958 3.5308 -1.2429 26 6 2.0689 3.4483 -1.3145 27 8 1.6621 2.0816 -1.2211 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3635 -1.0276 0.0005 31 1 1.8932 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.9988 0.8710 -0.6953 34 1 3.8544 0.9970 1.0754 35 1 5.7675 4.8942 -0.0796 36 1 7.7634 6.2222 0.1877 37 1 10.1788 9.5861 -0.4485 38 1 11.4346 3.9883 0.5895 39 1 10.1051 1.9278 0.4752 40 1 4.0295 2.9996 -2.0901 41 1 3.9058 4.5755 -1.2696 42 1 1.7262 3.8656 -2.2614 43 1 1.6351 4.0138 -0.4898 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000540940838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:16 Heat of formation + Delta-G solvation = -82.281982 kcal Electronic energy + Delta-G solvation = -24792.601406 eV Core-core repulsion = 21222.225380 eV Total energy + Delta-G solvation = -3570.376027 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.74443 -40.52491 -39.39404 -36.19695 -35.64529 -34.95585 -34.64417 -33.23608 -30.85981 -30.63463 -27.97729 -27.06189 -24.76862 -24.24181 -23.67724 -22.41869 -21.66937 -20.92162 -19.58568 -18.72110 -17.73534 -17.41324 -17.29100 -16.91559 -16.52993 -16.15117 -15.86295 -15.59821 -15.38721 -15.07835 -14.78032 -14.68208 -14.57327 -14.55246 -14.21367 -13.80565 -13.45121 -12.80609 -12.76707 -12.73677 -12.67277 -12.63575 -12.37395 -12.12116 -11.85936 -11.78981 -11.62886 -11.56275 -11.34663 -11.27156 -10.97218 -10.45555 -10.17160 -9.69137 -9.04041 -8.97053 -6.75787 0.48863 0.72794 1.20571 1.36339 1.46149 1.74731 1.96456 2.07616 2.65636 2.86452 3.39719 3.47338 3.54146 3.73915 3.91334 3.97372 4.11902 4.17949 4.33736 4.37831 4.44319 4.49367 4.52678 4.56614 4.62843 4.69612 4.73064 4.74098 4.82810 4.91008 5.05315 5.09505 5.10967 5.15035 5.19089 5.26037 5.31880 5.47696 5.48606 5.66884 5.99415 6.17262 6.32830 6.41373 6.49433 6.65985 7.16633 7.64075 8.09407 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.023971 B = 0.003456 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.818690 B = 8099.751242 C = 9050.997679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C 0.096 3.904 4 H 0.076 0.924 5 C -0.126 4.126 6 C -0.098 4.098 7 H 0.127 0.873 8 C 0.502 3.498 9 O -0.518 6.518 10 N -0.656 5.656 11 C 0.364 3.636 12 C -0.325 4.325 13 C 0.112 3.888 14 C -0.468 4.468 15 H 0.066 0.934 16 C 0.050 3.950 17 N -0.836 5.836 18 Si 0.969 3.031 19 H -0.240 1.240 20 H -0.277 1.277 21 H -0.264 1.264 22 C -0.282 4.282 23 C 0.128 3.872 24 N -0.573 5.573 25 C -0.148 4.148 26 C 0.065 3.935 27 O -0.393 6.393 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.424 0.576 36 H 0.120 0.880 37 H 0.299 0.701 38 H 0.121 0.879 39 H 0.160 0.840 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.958 -7.247 -1.865 22.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C 0.038 3.962 4 H 0.094 0.906 5 C -0.164 4.164 6 C -0.120 4.120 7 H 0.144 0.856 8 C 0.290 3.710 9 O -0.390 6.390 10 N -0.303 5.303 11 C 0.136 3.864 12 C -0.350 4.350 13 C 0.104 3.896 14 C -0.499 4.499 15 H 0.084 0.916 16 C -0.167 4.167 17 N -0.462 5.462 18 Si 0.792 3.208 19 H -0.165 1.165 20 H -0.204 1.204 21 H -0.188 1.188 22 C -0.305 4.305 23 C -0.024 4.024 24 N -0.293 5.293 25 C -0.186 4.186 26 C -0.012 4.012 27 O -0.313 6.313 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.262 0.738 36 H 0.137 0.863 37 H 0.109 0.891 38 H 0.139 0.861 39 H 0.177 0.823 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.130 0.870 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.102 -8.645 -1.973 22.890 hybrid contribution 1.035 1.613 -0.147 1.923 sum -20.067 -7.031 -2.120 21.369 Atomic orbital electron populations 1.21680 0.94334 1.02050 1.02140 1.21574 0.97330 0.93798 1.02911 1.22212 0.91638 0.94969 0.87380 0.90572 1.22014 0.96714 0.94472 1.03186 1.21461 0.88403 1.00035 1.02058 0.85556 1.21538 0.91184 0.82860 0.75452 1.90764 1.70576 1.32079 1.45575 1.43624 1.04024 1.11470 1.71214 1.18290 0.84674 0.89791 0.93675 1.21338 0.94931 0.96082 1.22669 1.17911 0.91326 0.93618 0.86766 1.19485 1.08697 0.93242 1.28460 0.91616 1.26871 0.98497 0.93409 0.97947 1.69625 1.39481 1.00401 1.36683 0.85460 0.78823 0.78751 0.77784 1.16458 1.20391 1.18809 1.22129 1.00344 0.92869 1.15185 1.22388 0.88512 0.98125 0.93417 1.67465 1.10130 1.27231 1.24505 1.22270 0.98751 1.02261 0.95360 1.22695 0.91566 0.82738 1.04151 1.87922 1.78407 1.25697 1.39233 0.92113 0.92823 0.92014 0.92169 0.89651 0.92578 0.90637 0.73798 0.86278 0.89058 0.86085 0.82319 0.92189 0.88381 0.86974 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.81 71.98 0.71 -1.23 16 2 C -0.12 -1.89 5.64 30.59 0.17 -1.72 16 3 C 0.10 1.66 2.64 30.63 0.08 1.74 16 4 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 5 C -0.13 -2.80 4.01 30.69 0.12 -2.67 16 6 C -0.10 -2.13 2.62 -11.42 -0.03 -2.16 16 7 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 8 C 0.50 16.67 7.12 87.66 0.62 17.30 16 9 O -0.52 -22.09 14.23 -3.03 -0.04 -22.13 16 10 N -0.66 -22.49 5.32 -308.67 -1.64 -24.13 16 11 C 0.36 16.15 7.42 132.75 0.98 17.13 16 12 C -0.32 -15.01 6.94 22.99 0.16 -14.85 16 13 C 0.11 5.66 5.17 -21.11 -0.11 5.55 16 14 C -0.47 -25.23 9.67 23.52 0.23 -25.00 16 15 H 0.07 3.80 8.06 -2.91 -0.02 3.77 16 16 C 0.05 2.52 5.48 85.29 0.47 2.99 16 17 N -0.84 -43.22 13.92 21.84 0.30 -42.92 16 18 Si 0.97 39.78 24.43 68.60 1.68 41.46 16 19 H -0.24 -8.61 6.67 99.48 0.66 -7.94 16 20 H -0.28 -10.72 7.11 99.48 0.71 -10.01 16 21 H -0.26 -11.59 6.66 99.48 0.66 -10.93 16 22 C -0.28 -13.18 9.90 22.84 0.23 -12.96 16 23 C 0.13 5.69 11.15 84.50 0.94 6.63 16 24 N -0.57 -27.26 7.85 -193.53 -1.52 -28.78 16 25 C -0.15 -2.63 5.29 30.68 0.16 -2.46 16 26 C 0.06 0.92 6.84 72.01 0.49 1.41 16 27 O -0.39 -7.48 9.94 -148.98 -1.48 -8.96 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.81 7.82 -2.38 -0.02 0.79 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.53 8.03 -2.39 -0.02 1.51 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.42 11.06 8.06 -92.71 -0.75 10.32 16 36 H 0.12 5.11 4.43 -2.91 -0.01 5.10 16 37 H 0.30 13.70 8.29 -92.71 -0.77 12.94 16 38 H 0.12 5.25 8.06 -2.91 -0.02 5.23 16 39 H 0.16 5.96 8.06 -2.91 -0.02 5.94 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.10 1.36 7.57 -2.39 -0.02 1.34 16 42 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -68.71 345.61 2.71 -66.01 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.18 Total: 29.77 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 5.23 Total: -10.32 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -2.86 Total: -95.82 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -1.52 Total: -31.09 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 1.68 Total: 41.46 kcal Total: -68.71 2.71 -66.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540940838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.276 kcal (2) G-P(sol) polarization free energy of solvation -68.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds