Wall clock time and date at job start Tue Mar 31 2020 09:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47133 * 2 1 4 4 C 1.52995 * 109.47345 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47245 * 174.35386 * 4 3 2 6 6 C 1.46494 * 119.99739 * 275.21554 * 5 4 3 7 7 S 1.65599 * 120.00186 * 95.21977 * 5 4 3 8 8 O 1.42098 * 106.40167 * 156.24213 * 7 5 4 9 9 O 1.42097 * 106.40150 * 23.32073 * 7 5 4 10 10 N 1.65600 * 107.21551 * 269.78140 * 7 5 4 11 11 C 1.46929 * 120.62679 * 95.71344 * 10 7 5 12 12 C 1.53628 * 108.54127 * 126.36931 * 11 10 7 13 13 C 1.53045 * 109.24373 * 54.85515 * 12 11 10 14 14 C 1.50691 * 109.45099 * 178.49995 * 13 12 11 15 15 H 1.08004 * 120.00455 * 120.06149 * 14 13 12 16 16 C 1.37885 * 119.99986 * 300.05916 * 14 13 12 17 17 N 1.31510 * 119.99695 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99826 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47154 * 90.00384 * 18 16 14 20 20 H 1.48503 * 109.46743 * 209.99853 * 18 16 14 21 21 H 1.48494 * 109.47313 * 330.00113 * 18 16 14 22 22 C 1.53046 * 109.53622 * 298.51048 * 13 12 11 23 23 C 1.46921 * 120.63137 * 275.99313 * 10 7 5 24 24 H 1.08995 * 109.46948 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46707 * 299.99849 * 1 2 3 26 26 H 1.09002 * 109.47255 * 59.99818 * 1 2 3 27 27 H 1.08999 * 109.46802 * 239.99997 * 2 1 3 28 28 H 1.08995 * 109.47316 * 119.99790 * 2 1 3 29 29 H 1.09000 * 109.46984 * 59.99837 * 3 2 1 30 30 H 1.09005 * 109.46870 * 300.00607 * 3 2 1 31 31 H 1.08999 * 109.47580 * 54.34895 * 4 3 2 32 32 H 1.09006 * 109.46761 * 294.35061 * 4 3 2 33 33 H 1.09004 * 109.47504 * 269.99885 * 6 5 4 34 34 H 1.09000 * 109.47232 * 30.00118 * 6 5 4 35 35 H 1.09002 * 109.47308 * 150.00159 * 6 5 4 36 36 H 1.09000 * 109.58858 * 246.19641 * 11 10 7 37 37 H 1.08991 * 109.58839 * 6.62893 * 11 10 7 38 38 H 1.09005 * 109.63355 * 294.86898 * 12 11 10 39 39 H 1.09000 * 109.43503 * 174.72117 * 12 11 10 40 40 H 1.09002 * 109.45777 * 58.52837 * 13 12 11 41 41 H 0.97000 * 120.00215 * 180.02562 * 17 16 14 42 42 H 1.08996 * 109.49740 * 301.41559 * 22 13 12 43 43 H 1.08998 * 109.49435 * 181.31176 * 22 13 12 44 44 H 1.08993 * 109.59098 * 353.37379 * 23 10 7 45 45 H 1.09004 * 109.58605 * 113.65793 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8171 -0.1365 6 6 4.1931 3.4184 -1.4655 7 16 4.4578 3.6910 1.2121 8 8 5.3766 4.6880 0.7866 9 8 4.7539 2.7449 2.2301 10 7 3.0924 4.4910 1.7001 11 6 2.2258 3.9253 2.7430 12 6 2.0337 4.9798 3.8436 13 6 1.5023 6.2713 3.2175 14 6 1.2772 7.2972 4.2981 15 1 1.8073 8.2378 4.2687 16 6 0.3945 7.0352 5.3244 17 7 -0.2506 5.8897 5.3605 18 14 0.1150 8.3072 6.6635 19 1 -0.9988 9.2061 6.2677 20 1 -0.2309 7.6205 7.9340 21 1 1.3522 9.1061 6.8534 22 6 2.5207 6.8081 2.2091 23 6 2.7214 5.7769 1.0940 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9331 0.8438 -0.8359 32 1 3.9337 1.0187 0.9354 33 1 5.1914 3.2190 -1.8551 34 1 3.4489 2.9886 -2.1360 35 1 4.0393 4.4952 -1.3945 36 1 1.2596 3.6625 2.3124 37 1 2.6943 3.0362 3.1648 38 1 2.9881 5.1781 4.3315 39 1 1.3185 4.6108 4.5786 40 1 0.5602 6.0672 2.7086 41 1 -0.8719 5.7055 6.0822 42 1 3.4704 6.9889 2.7124 43 1 2.1520 7.7401 1.7808 44 1 3.5168 6.1098 0.4274 45 1 1.7960 5.6614 0.5295 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541912393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:36 Heat of formation + Delta-G solvation = -116.306859 kcal Electronic energy + Delta-G solvation = -24882.308096 eV Core-core repulsion = 21445.900591 eV Total energy + Delta-G solvation = -3436.407505 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.28335 -38.53648 -38.03644 -36.98956 -35.28448 -35.05246 -32.63026 -31.66998 -30.13924 -27.63427 -26.95422 -24.25112 -24.02261 -23.85358 -21.95745 -21.11291 -19.81845 -18.90201 -18.52890 -18.18722 -17.31530 -16.53994 -16.24350 -15.91640 -15.47937 -15.20233 -15.14435 -14.88678 -14.49134 -14.36796 -14.19536 -14.14734 -13.73903 -13.61072 -13.47155 -13.35931 -13.16722 -12.94230 -12.82594 -12.61989 -12.58087 -12.41850 -12.24908 -12.06052 -12.01477 -11.91774 -11.78627 -11.44323 -11.33056 -10.97580 -10.80209 -10.38880 -10.04896 -9.81320 -8.06455 -6.19479 -0.49098 1.40878 1.42895 1.51990 1.86355 2.44179 2.44733 3.19900 3.23443 3.71156 3.84599 4.02645 4.13852 4.29785 4.31683 4.37223 4.45233 4.48742 4.63319 4.66783 4.69034 4.73126 4.79909 4.83691 4.87331 4.90521 4.96118 5.01601 5.07074 5.12602 5.17915 5.27256 5.32516 5.33784 5.45405 5.50161 5.55627 5.61776 5.69006 5.79342 6.03209 6.16681 6.42406 6.91192 7.48078 8.96955 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.016902 B = 0.004632 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.217792 B = 6043.145857 C = 7036.926049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.143 4.143 4 C 0.112 3.888 5 N -1.004 6.004 6 C 0.087 3.913 7 S 2.792 3.208 8 O -1.004 7.004 9 O -1.007 7.007 10 N -1.000 6.000 11 C 0.132 3.868 12 C -0.116 4.116 13 C 0.049 3.951 14 C -0.536 4.536 15 H 0.048 0.952 16 C 0.016 3.984 17 N -0.913 5.913 18 Si 0.948 3.052 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.274 1.274 22 C -0.118 4.118 23 C 0.128 3.872 24 H 0.061 0.939 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.019 0.981 39 H 0.075 0.925 40 H 0.008 0.992 41 H 0.261 0.739 42 H 0.038 0.962 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.788 -11.067 -16.133 19.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.182 4.182 4 C -0.013 4.013 5 N -0.846 5.846 6 C -0.058 4.058 7 S 2.802 3.198 8 O -0.988 6.988 9 O -0.991 6.991 10 N -0.841 5.841 11 C 0.007 3.993 12 C -0.156 4.156 13 C 0.031 3.969 14 C -0.574 4.574 15 H 0.066 0.934 16 C -0.183 4.183 17 N -0.552 5.552 18 Si 0.775 3.225 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.157 4.157 23 C 0.003 3.997 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.127 0.873 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.037 0.963 39 H 0.093 0.907 40 H 0.026 0.974 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.086 0.914 44 H 0.110 0.890 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.551 -11.127 -15.645 19.730 hybrid contribution -0.676 0.849 1.137 1.572 sum 3.874 -10.277 -14.508 18.197 Atomic orbital electron populations 1.21775 0.95806 1.01941 1.01620 1.21443 0.95971 0.95482 1.02810 1.22114 0.95102 0.98262 1.02752 1.21603 0.94313 0.81002 1.04337 1.57720 1.81766 1.24212 1.20882 1.21690 1.03317 0.98267 0.82507 1.01468 0.73154 0.72328 0.72871 1.93536 1.61521 1.60538 1.83205 1.93515 1.83959 1.63532 1.58117 1.57897 1.44258 1.31916 1.50025 1.21501 0.93924 0.95967 0.87870 1.21869 0.98913 0.97044 0.97772 1.18551 0.92957 0.92607 0.92820 1.21617 1.23999 1.02333 1.09464 0.93403 1.25654 0.95640 0.97107 0.99869 1.69957 1.28049 1.23750 1.33474 0.85707 0.78348 0.79507 0.78964 1.20016 1.20994 1.19898 1.21865 0.99059 0.98044 0.96760 1.21494 1.01522 0.81747 0.94934 0.91955 0.93894 0.92382 0.90138 0.92098 0.93244 0.90402 0.87291 0.90547 0.91708 0.88247 0.91369 0.91027 0.90217 0.96250 0.90660 0.97366 0.93014 0.94348 0.91359 0.88969 0.90009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.91 71.98 0.71 -1.73 16 2 C -0.12 -1.79 5.93 30.60 0.18 -1.61 16 3 C -0.14 -2.56 5.54 30.59 0.17 -2.39 16 4 C 0.11 2.09 5.66 86.38 0.49 2.58 16 5 N -1.00 -22.33 3.24 -539.14 -1.75 -24.08 16 6 C 0.09 1.40 10.31 127.77 1.32 2.72 16 7 S 2.79 89.72 6.08 -56.49 -0.34 89.38 16 8 O -1.00 -36.51 15.99 -128.00 -2.05 -38.56 16 9 O -1.01 -37.91 15.14 -128.00 -1.94 -39.85 16 10 N -1.00 -33.70 3.34 -512.28 -1.71 -35.41 16 11 C 0.13 4.96 6.02 86.51 0.52 5.48 16 12 C -0.12 -5.51 5.17 30.82 0.16 -5.35 16 13 C 0.05 2.41 2.06 -11.51 -0.02 2.38 16 14 C -0.54 -29.49 8.56 25.60 0.22 -29.27 16 15 H 0.05 2.62 7.74 -2.91 -0.02 2.60 16 16 C 0.02 0.88 5.30 84.66 0.45 1.33 16 17 N -0.91 -51.62 11.30 21.45 0.24 -51.37 16 18 Si 0.95 43.73 29.54 68.60 2.03 45.76 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 22 C -0.12 -4.79 5.30 30.68 0.16 -4.63 16 23 C 0.13 4.11 6.45 86.37 0.56 4.66 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 1.11 7.19 -2.39 -0.02 1.09 16 30 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.11 1.38 8.11 -2.39 -0.02 1.36 16 32 H 0.08 1.68 6.91 -2.38 -0.02 1.66 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.10 1.04 8.07 -2.39 -0.02 1.02 16 35 H 0.07 1.14 7.80 -2.39 -0.02 1.12 16 36 H 0.07 2.50 7.72 -2.39 -0.02 2.48 16 37 H 0.08 2.90 6.79 -2.39 -0.02 2.88 16 38 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.08 3.98 6.03 -2.39 -0.01 3.96 16 40 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 42 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 44 H 0.09 2.60 7.07 -2.39 -0.02 2.59 16 45 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 Total: -1.00 -67.52 361.62 0.33 -67.19 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.94 Total: 12.77 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: 4.91 Total: -25.82 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -3.22 Total: -110.86 kcal Atomic # 8 Polarization: -74.42 SS G_CDS: -3.98 Total: -78.41 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 89.72 SS G_CDS: -0.34 Total: 89.38 kcal Total: -67.52 0.33 -67.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541912393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.118 kcal (2) G-P(sol) polarization free energy of solvation -67.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds