Wall clock time and date at job start Tue Mar 31 2020 08:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35975 * 116.99852 * 2 1 4 4 C 1.38827 * 119.98359 * 359.97438 * 3 2 1 5 5 C 1.38101 * 120.25187 * 179.97438 * 4 3 2 6 6 C 1.38654 * 120.03063 * 0.08005 * 5 4 3 7 7 O 1.35706 * 132.50265 * 179.62698 * 6 5 4 8 8 C 1.34702 * 109.30697 * 179.88525 * 7 6 5 9 9 N 1.30356 * 125.54213 * 180.20005 * 8 7 6 10 10 C 1.46503 * 119.99999 * 0.24020 * 9 8 7 11 11 C 1.52996 * 109.47254 * 120.00053 * 10 9 8 12 12 C 1.53006 * 109.47441 * 300.00150 * 11 10 9 13 13 C 1.53005 * 109.47046 * 60.00391 * 11 10 9 14 14 C 1.53004 * 109.47323 * 179.97438 * 11 10 9 15 15 C 1.50699 * 109.47216 * 179.97438 * 14 11 10 16 16 H 1.08000 * 119.99989 * 0.02562 * 15 14 11 17 17 C 1.37871 * 120.00205 * 179.97438 * 15 14 11 18 18 N 1.31518 * 119.99828 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00466 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47027 * 60.00135 * 19 17 15 21 21 H 1.48495 * 109.47276 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47029 * 300.00576 * 19 17 15 23 23 N 1.37249 * 108.91750 * 0.40368 * 8 7 6 24 24 H 0.97002 * 126.41239 * 179.77090 * 23 8 7 25 25 C 1.39405 * 119.75801 * 359.94046 * 6 5 4 26 26 C 1.38588 * 119.97990 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46951 * 299.99846 * 1 2 3 28 28 H 1.08993 * 109.47410 * 59.99772 * 1 2 3 29 29 H 1.09005 * 109.47037 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.86987 * 359.97438 * 4 3 2 31 31 H 1.07997 * 119.98626 * 180.02562 * 5 4 3 32 32 H 1.08995 * 109.47376 * 240.00304 * 10 9 8 33 33 H 1.09000 * 109.46811 * 0.02562 * 10 9 8 34 34 H 1.09000 * 109.46596 * 59.99736 * 12 11 10 35 35 H 1.09000 * 109.47237 * 179.97438 * 12 11 10 36 36 H 1.09000 * 109.46808 * 300.00335 * 12 11 10 37 37 H 1.08995 * 109.47148 * 60.00016 * 13 11 10 38 38 H 1.09003 * 109.46852 * 180.02562 * 13 11 10 39 39 H 1.09005 * 109.46549 * 299.99724 * 13 11 10 40 40 H 1.08995 * 109.47365 * 300.00287 * 14 11 10 41 41 H 1.09000 * 109.46753 * 60.00325 * 14 11 10 42 42 H 0.97005 * 120.00178 * 179.97438 * 18 17 15 43 43 H 1.07991 * 120.10033 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2898 2.3756 -0.0005 5 6 1.9109 3.6091 0.0000 6 6 3.2952 3.6889 -0.0006 7 8 4.1529 4.7405 -0.0068 8 6 5.4195 4.2821 -0.0017 9 7 6.4930 5.0216 -0.0017 10 6 6.3765 6.4820 -0.0023 11 6 7.0545 7.0482 1.2469 12 6 6.3759 6.4829 2.4963 13 6 8.5331 6.6547 1.2473 14 6 6.9333 8.5735 1.2460 15 6 7.6007 9.1311 2.4767 16 1 8.0651 8.4644 3.1882 17 6 7.6192 10.4925 2.6940 18 7 7.0540 11.3044 1.8274 19 14 8.4470 11.1839 4.2192 20 1 9.8818 10.8009 4.2203 21 1 8.3292 12.6642 4.2183 22 1 7.7875 10.6360 5.4316 23 7 5.3961 2.9098 -0.0012 24 1 6.1668 2.3208 -0.0011 25 6 4.0556 2.5205 -0.0005 26 6 3.4302 1.2836 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 0.2114 2.3163 -0.0014 31 1 1.3183 4.5119 0.0000 32 1 6.8599 6.8848 -0.8922 33 1 5.3231 6.7624 -0.0022 34 1 6.4626 5.3964 2.4966 35 1 6.8592 6.8860 3.3862 36 1 5.3225 6.7633 2.4959 37 1 9.0165 7.0575 0.3574 38 1 9.0160 7.0578 2.1376 39 1 8.6198 5.5681 1.2478 40 1 7.4171 8.9759 0.3560 41 1 5.8801 8.8542 1.2455 42 1 7.0667 12.2622 1.9804 43 1 4.0197 0.3788 -0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568387994.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:12 Heat of formation + Delta-G solvation = -3.627935 kcal Electronic energy + Delta-G solvation = -24336.042908 eV Core-core repulsion = 20769.077577 eV Total energy + Delta-G solvation = -3566.965331 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.78340 -40.03236 -37.43611 -36.68054 -35.38408 -33.50381 -32.00777 -30.95969 -28.90511 -27.56707 -26.91132 -26.24769 -25.75415 -23.34679 -23.03227 -22.87939 -21.30042 -18.89822 -18.52891 -17.77132 -16.80211 -16.66335 -16.13632 -16.08057 -16.02386 -15.37734 -14.84501 -14.43586 -14.29606 -13.75383 -13.70744 -13.38406 -13.26243 -12.88944 -12.62227 -12.50282 -12.28714 -11.95869 -11.91848 -11.41142 -11.27342 -10.98568 -10.83362 -10.75697 -10.61731 -10.42799 -10.12195 -9.76381 -9.50009 -9.38167 -8.92420 -8.81546 -8.65054 -8.26373 -7.50404 -5.91014 -3.90966 0.83217 1.00698 2.30768 2.61488 2.71235 3.12196 3.29010 3.38356 3.42480 3.45162 4.19279 4.49333 4.53002 4.63622 4.75685 4.77749 4.97926 5.04097 5.07283 5.18472 5.35985 5.44497 5.68785 5.79961 5.85244 5.91179 5.93962 6.04003 6.09022 6.36079 6.49717 6.60750 6.74356 6.84490 6.89668 6.90990 7.04395 7.20499 7.29051 7.33580 7.41412 7.75931 7.91125 8.08744 8.16307 8.54218 9.13777 9.71196 11.20609 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.030217 B = 0.002635 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.407785 B =10623.794353 C =10976.823304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.145 3.855 4 C -0.206 4.206 5 C -0.044 4.044 6 C 0.006 3.994 7 O -0.251 6.251 8 C 0.511 3.489 9 N -0.540 5.540 10 C 0.077 3.923 11 C -0.053 4.053 12 C -0.122 4.122 13 C -0.117 4.117 14 C 0.034 3.966 15 C -0.506 4.506 16 H 0.058 0.942 17 C 0.054 3.946 18 N -0.898 5.898 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.278 1.278 23 N -0.642 5.642 24 H 0.442 0.558 25 C 0.133 3.867 26 C -0.152 4.152 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.029 0.971 35 H 0.062 0.938 36 H 0.038 0.962 37 H 0.040 0.960 38 H 0.056 0.944 39 H 0.040 0.960 40 H 0.016 0.984 41 H 0.014 0.986 42 H 0.259 0.741 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.483 -23.476 -5.441 27.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.098 3.902 4 C -0.226 4.226 5 C -0.064 4.064 6 C -0.043 4.043 7 O -0.148 6.148 8 C 0.200 3.800 9 N -0.285 5.285 10 C -0.052 4.052 11 C -0.054 4.054 12 C -0.180 4.180 13 C -0.174 4.174 14 C -0.004 4.004 15 C -0.544 4.544 16 H 0.076 0.924 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.204 1.204 23 N -0.280 5.280 24 H 0.284 0.716 25 C 0.031 3.969 26 C -0.175 4.175 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.159 0.841 31 H 0.159 0.841 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.035 0.965 41 H 0.032 0.968 42 H 0.069 0.931 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.666 -23.151 -5.484 26.953 hybrid contribution -0.051 0.690 0.819 1.072 sum -12.716 -22.461 -4.665 26.229 Atomic orbital electron populations 1.23107 0.77923 1.04140 1.01678 1.86066 1.21655 1.26295 1.88708 1.18370 0.91088 0.84410 0.96301 1.20896 1.00310 0.90705 1.10674 1.19763 0.89057 0.98625 0.98945 1.19017 0.92028 0.83938 1.09276 1.85063 1.15209 1.31669 1.82816 1.21851 0.80631 0.84106 0.93443 1.72808 1.15672 1.09448 1.30621 1.22029 1.00047 0.83040 1.00078 1.20660 0.94750 0.98379 0.91605 1.21690 0.99550 0.97743 0.98979 1.21614 0.95611 0.98900 1.01319 1.19135 0.97003 0.87003 0.97218 1.21190 1.35147 0.91405 1.06656 0.92375 1.25013 0.95822 0.97336 0.96444 1.69962 1.44897 1.03210 1.35691 0.86717 0.80079 0.77779 0.83770 1.20321 1.21446 1.20390 1.42110 1.05934 1.04748 1.75187 0.71554 1.18073 0.83753 0.94344 1.00730 1.18887 0.91692 0.95194 1.11771 0.92335 0.92365 0.88103 0.84066 0.84083 0.90516 0.93501 0.95210 0.91926 0.94273 0.94036 0.92523 0.94128 0.96537 0.96760 0.93135 0.84211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.53 10.50 -19.66 -0.21 -2.73 16 3 C 0.14 1.31 6.68 -39.23 -0.26 1.04 16 4 C -0.21 -1.69 9.03 -39.41 -0.36 -2.04 16 5 C -0.04 -0.45 10.06 -39.48 -0.40 -0.85 16 6 C 0.01 0.08 7.32 -38.99 -0.29 -0.21 16 7 O -0.25 -4.06 9.65 0.55 0.01 -4.05 16 8 C 0.51 8.13 8.86 -88.44 -0.78 7.35 16 9 N -0.54 -9.65 9.10 -62.59 -0.57 -10.22 16 10 C 0.08 1.52 5.28 -4.04 -0.02 1.50 16 11 C -0.05 -1.17 0.60 -154.50 -0.09 -1.26 16 12 C -0.12 -2.59 8.06 37.16 0.30 -2.29 16 13 C -0.12 -2.45 8.06 37.16 0.30 -2.15 16 14 C 0.03 0.90 4.04 -27.88 -0.11 0.78 16 15 C -0.51 -14.29 7.65 -34.44 -0.26 -14.55 16 16 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 17 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 19 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 N -0.64 -7.82 6.35 -11.92 -0.08 -7.89 16 24 H 0.44 4.15 8.96 -40.82 -0.37 3.79 16 25 C 0.13 1.55 7.24 -83.76 -0.61 0.94 16 26 C -0.15 -1.47 10.01 -39.32 -0.39 -1.86 16 27 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 28 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16 29 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.14 0.75 6.28 -52.49 -0.33 0.42 16 31 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.05 0.95 7.06 -51.93 -0.37 0.58 16 34 H 0.03 0.58 7.60 -51.93 -0.39 0.18 16 35 H 0.06 1.38 6.62 -51.93 -0.34 1.04 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.24 6.62 -51.93 -0.34 0.89 16 39 H 0.04 0.78 7.60 -51.93 -0.39 0.39 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 352.92 15.07 5.32 5.32 Total: -1.00 -33.10 352.92 -8.04 -41.15 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -6.15 Total: -0.97 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -2.08 Total: -11.02 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.09 Total: -44.74 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.20 Total: -6.79 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.10 -8.04 -41.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568387994.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.518 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds