Wall clock time and date at job start Tue Mar 31 2020 08:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35975 * 116.99852 * 2 1 4 4 C 1.38827 * 119.98359 * 359.97438 * 3 2 1 5 5 C 1.38101 * 120.25187 * 179.97438 * 4 3 2 6 6 C 1.38654 * 120.03063 * 0.08005 * 5 4 3 7 7 O 1.35706 * 132.50265 * 179.62698 * 6 5 4 8 8 C 1.34702 * 109.30697 * 179.88525 * 7 6 5 9 9 N 1.30356 * 125.54213 * 180.20005 * 8 7 6 10 10 C 1.46503 * 119.99999 * 0.24020 * 9 8 7 11 11 C 1.52996 * 109.47254 * 120.00053 * 10 9 8 12 12 C 1.53006 * 109.47441 * 300.00150 * 11 10 9 13 13 C 1.53005 * 109.47046 * 60.00391 * 11 10 9 14 14 C 1.53004 * 109.47323 * 179.97438 * 11 10 9 15 15 C 1.50699 * 109.47216 * 179.97438 * 14 11 10 16 16 H 1.08000 * 119.99989 * 0.02562 * 15 14 11 17 17 C 1.37871 * 120.00205 * 179.97438 * 15 14 11 18 18 N 1.31518 * 119.99828 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00466 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47027 * 60.00135 * 19 17 15 21 21 H 1.48495 * 109.47276 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47029 * 300.00576 * 19 17 15 23 23 N 1.37249 * 108.91750 * 0.40368 * 8 7 6 24 24 H 0.97002 * 126.41239 * 179.77090 * 23 8 7 25 25 C 1.39405 * 119.75801 * 359.94046 * 6 5 4 26 26 C 1.38588 * 119.97990 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46951 * 299.99846 * 1 2 3 28 28 H 1.08993 * 109.47410 * 59.99772 * 1 2 3 29 29 H 1.09005 * 109.47037 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.86987 * 359.97438 * 4 3 2 31 31 H 1.07997 * 119.98626 * 180.02562 * 5 4 3 32 32 H 1.08995 * 109.47376 * 240.00304 * 10 9 8 33 33 H 1.09000 * 109.46811 * 0.02562 * 10 9 8 34 34 H 1.09000 * 109.46596 * 59.99736 * 12 11 10 35 35 H 1.09000 * 109.47237 * 179.97438 * 12 11 10 36 36 H 1.09000 * 109.46808 * 300.00335 * 12 11 10 37 37 H 1.08995 * 109.47148 * 60.00016 * 13 11 10 38 38 H 1.09003 * 109.46852 * 180.02562 * 13 11 10 39 39 H 1.09005 * 109.46549 * 299.99724 * 13 11 10 40 40 H 1.08995 * 109.47365 * 300.00287 * 14 11 10 41 41 H 1.09000 * 109.46753 * 60.00325 * 14 11 10 42 42 H 0.97005 * 120.00178 * 179.97438 * 18 17 15 43 43 H 1.07991 * 120.10033 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2898 2.3756 -0.0005 5 6 1.9109 3.6091 0.0000 6 6 3.2952 3.6889 -0.0006 7 8 4.1529 4.7405 -0.0068 8 6 5.4195 4.2821 -0.0017 9 7 6.4930 5.0216 -0.0017 10 6 6.3765 6.4820 -0.0023 11 6 7.0545 7.0482 1.2469 12 6 6.3759 6.4829 2.4963 13 6 8.5331 6.6547 1.2473 14 6 6.9333 8.5735 1.2460 15 6 7.6007 9.1311 2.4767 16 1 8.0651 8.4644 3.1882 17 6 7.6192 10.4925 2.6940 18 7 7.0540 11.3044 1.8274 19 14 8.4470 11.1839 4.2192 20 1 9.8818 10.8009 4.2203 21 1 8.3292 12.6642 4.2183 22 1 7.7875 10.6360 5.4316 23 7 5.3961 2.9098 -0.0012 24 1 6.1668 2.3208 -0.0011 25 6 4.0556 2.5205 -0.0005 26 6 3.4302 1.2836 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 0.2114 2.3163 -0.0014 31 1 1.3183 4.5119 0.0000 32 1 6.8599 6.8848 -0.8922 33 1 5.3231 6.7624 -0.0022 34 1 6.4626 5.3964 2.4966 35 1 6.8592 6.8860 3.3862 36 1 5.3225 6.7633 2.4959 37 1 9.0165 7.0575 0.3574 38 1 9.0160 7.0578 2.1376 39 1 8.6198 5.5681 1.2478 40 1 7.4171 8.9759 0.3560 41 1 5.8801 8.8542 1.2455 42 1 7.0667 12.2622 1.9804 43 1 4.0197 0.3788 -0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568387994.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:11 Heat of formation + Delta-G solvation = -26.574849 kcal Electronic energy + Delta-G solvation = -24337.037961 eV Core-core repulsion = 20769.077577 eV Total energy + Delta-G solvation = -3567.960384 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.81690 -40.71178 -38.96386 -37.67692 -36.45096 -35.10570 -33.89431 -31.70923 -29.91059 -28.93680 -28.02452 -27.96647 -27.26917 -24.98220 -24.21659 -23.77971 -22.50393 -19.88318 -19.42108 -19.27544 -18.35907 -17.81304 -17.63686 -16.82294 -16.68494 -16.55995 -16.33655 -15.90961 -15.44373 -15.11455 -15.07125 -14.50228 -14.36599 -14.03589 -13.94491 -13.80635 -13.64482 -13.22243 -12.99646 -12.83488 -12.74003 -12.60905 -12.49877 -12.31222 -12.07531 -11.93846 -11.89730 -11.52673 -11.11166 -11.03974 -10.59405 -10.50353 -10.39615 -9.47690 -8.57022 -8.13479 -6.21461 0.04352 0.18508 1.33621 1.40105 1.41042 1.43521 1.50913 1.75275 2.43394 2.45744 2.51271 3.19324 3.32801 3.77399 3.88701 3.97341 4.13193 4.16191 4.22379 4.25961 4.36943 4.45442 4.50911 4.55934 4.70314 4.83598 4.85404 4.87301 4.94658 5.01681 5.05501 5.12030 5.15084 5.17957 5.30554 5.43518 5.47671 5.51314 5.60558 5.81735 5.89653 6.00081 6.21925 6.33501 6.37180 6.90339 6.94179 7.45302 8.98517 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.030217 B = 0.002635 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.407785 B =10623.794353 C =10976.823304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.324 6.324 3 C 0.149 3.851 4 C -0.192 4.192 5 C -0.045 4.045 6 C -0.038 4.038 7 O -0.274 6.274 8 C 0.518 3.482 9 N -0.566 5.566 10 C 0.091 3.909 11 C -0.051 4.051 12 C -0.109 4.109 13 C -0.107 4.107 14 C 0.042 3.958 15 C -0.516 4.516 16 H 0.065 0.935 17 C -0.004 4.004 18 N -0.937 5.937 19 Si 0.959 3.041 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.269 1.269 23 N -0.628 5.628 24 H 0.454 0.546 25 C 0.123 3.877 26 C -0.151 4.151 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.120 0.880 30 H 0.175 0.825 31 H 0.154 0.846 32 H 0.069 0.931 33 H 0.032 0.968 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.028 0.972 37 H 0.037 0.963 38 H 0.044 0.956 39 H 0.060 0.940 40 H -0.010 1.010 41 H -0.016 1.016 42 H 0.261 0.739 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.669 -26.135 -4.600 30.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.237 6.237 3 C 0.102 3.898 4 C -0.211 4.211 5 C -0.064 4.064 6 C -0.085 4.085 7 O -0.171 6.171 8 C 0.207 3.793 9 N -0.314 5.314 10 C -0.039 4.039 11 C -0.051 4.051 12 C -0.167 4.167 13 C -0.164 4.164 14 C 0.004 3.996 15 C -0.554 4.554 16 H 0.083 0.917 17 C -0.201 4.201 18 N -0.578 5.578 19 Si 0.784 3.216 20 H -0.192 1.192 21 H -0.211 1.211 22 H -0.194 1.194 23 N -0.267 5.267 24 H 0.299 0.701 25 C 0.022 3.978 26 C -0.173 4.173 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.138 0.862 30 H 0.193 0.807 31 H 0.172 0.828 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.008 0.992 41 H 0.002 0.998 42 H 0.069 0.931 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.891 -25.885 -4.642 29.741 hybrid contribution 0.031 1.300 0.493 1.391 sum -13.860 -24.585 -4.149 28.526 Atomic orbital electron populations 1.23458 0.75771 1.05944 1.02836 1.86076 1.23862 1.25573 1.88226 1.18527 0.91074 0.85212 0.94997 1.21262 1.01929 0.89515 1.08426 1.20098 0.88084 1.00100 0.98141 1.19533 0.93096 0.83547 1.12305 1.84992 1.15740 1.33489 1.82896 1.21997 0.80495 0.85203 0.91610 1.72750 1.16537 1.07551 1.34604 1.21653 0.98599 0.85117 0.98534 1.20524 0.96086 0.95245 0.93292 1.21540 0.98585 0.98657 0.97899 1.21496 0.94398 1.00017 1.00483 1.18989 0.94480 0.90426 0.95671 1.21535 1.34891 0.91862 1.07142 0.91713 1.25944 0.96525 0.97835 0.99802 1.70110 1.46336 1.03513 1.37809 0.85586 0.79307 0.76950 0.79725 1.19223 1.21113 1.19366 1.42045 1.06939 1.03377 1.74303 0.70133 1.18195 0.83060 0.94717 1.01814 1.19121 0.92407 0.94959 1.10842 0.91202 0.91076 0.86224 0.80729 0.82815 0.91283 0.94947 0.93430 0.93031 0.95248 0.94405 0.93697 0.92148 0.99203 0.99792 0.93059 0.82363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.81 113.37 1.11 1.18 16 2 O -0.32 -4.12 10.50 -93.27 -0.98 -5.10 16 3 C 0.15 2.25 6.68 22.49 0.15 2.40 16 4 C -0.19 -2.55 9.03 22.38 0.20 -2.35 16 5 C -0.05 -0.84 10.06 22.34 0.22 -0.61 16 6 C -0.04 -0.96 7.32 22.65 0.17 -0.80 16 7 O -0.27 -9.07 9.65 -20.95 -0.20 -9.27 16 8 C 0.52 16.58 8.86 179.59 1.59 18.17 16 9 N -0.57 -20.46 9.10 -466.30 -4.24 -24.71 16 10 C 0.09 3.74 5.28 86.38 0.46 4.20 16 11 C -0.05 -2.29 0.60 -52.18 -0.03 -2.32 16 12 C -0.11 -4.70 8.06 71.98 0.58 -4.12 16 13 C -0.11 -4.49 8.06 71.98 0.58 -3.91 16 14 C 0.04 2.32 4.04 29.85 0.12 2.44 16 15 C -0.52 -29.84 7.65 25.60 0.20 -29.64 16 16 H 0.06 3.59 5.68 -2.91 -0.02 3.58 16 17 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 18 N -0.94 -58.67 13.29 21.45 0.28 -58.38 16 19 Si 0.96 45.61 29.54 68.60 2.03 47.64 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 23 N -0.63 -14.79 6.35 -302.34 -1.92 -16.71 16 24 H 0.45 7.99 8.96 -92.71 -0.83 7.16 16 25 C 0.12 2.72 7.24 38.27 0.28 3.00 16 26 C -0.15 -2.56 10.01 22.44 0.22 -2.33 16 27 H 0.07 0.19 7.66 -2.39 -0.02 0.17 16 28 H 0.07 0.17 7.66 -2.39 -0.02 0.15 16 29 H 0.12 0.13 8.14 -2.38 -0.02 0.11 16 30 H 0.18 1.10 6.28 -2.91 -0.02 1.08 16 31 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 32 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 33 H 0.03 1.38 7.06 -2.39 -0.02 1.37 16 34 H 0.05 1.85 7.60 -2.39 -0.02 1.83 16 35 H 0.05 2.29 6.62 -2.39 -0.02 2.27 16 36 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.04 1.96 6.62 -2.39 -0.02 1.94 16 39 H 0.06 2.29 7.60 -2.38 -0.02 2.27 16 40 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 41 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 42 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 43 H 0.16 2.03 8.06 -2.92 -0.02 2.00 16 Total: -1.00 -73.28 352.92 1.48 -71.80 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.20 Total: 9.22 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 6.31 Total: -14.50 kcal Atomic # 7 Polarization: -93.92 SS G_CDS: -5.88 Total: -99.80 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -1.18 Total: -14.36 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -73.28 1.48 -71.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568387994.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.224 kcal (2) G-P(sol) polarization free energy of solvation -73.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds