Wall clock time and date at job start Tue Mar 31 2020 09:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47028 * 2 1 4 4 C 1.53001 * 109.47247 * 119.99298 * 2 1 3 5 5 S 1.81401 * 109.47535 * 239.99525 * 2 1 3 6 6 O 1.42096 * 110.54442 * 173.58560 * 5 2 1 7 7 O 1.42097 * 110.53946 * 310.33861 * 5 2 1 8 8 N 1.65604 * 104.44710 * 61.96037 * 5 2 1 9 9 C 1.46929 * 120.62817 * 90.51083 * 8 5 2 10 10 C 1.53624 * 108.54239 * 126.36916 * 9 8 5 11 11 C 1.53035 * 109.24026 * 54.85464 * 10 9 8 12 12 N 1.46903 * 109.46161 * 178.48971 * 11 10 9 13 13 C 1.46892 * 111.00266 * 275.07279 * 12 11 10 14 14 C 1.50699 * 109.47465 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99987 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00394 * 179.97438 * 14 13 12 17 17 N 1.31526 * 119.99824 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00476 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47145 * 59.99733 * 18 16 14 20 20 H 1.48502 * 109.47538 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47281 * 300.00281 * 18 16 14 22 22 C 1.53047 * 109.54161 * 298.51111 * 11 10 9 23 23 C 1.46926 * 120.63259 * 270.79143 * 8 5 2 24 24 H 1.08999 * 109.46915 * 55.10564 * 1 2 3 25 25 H 1.08998 * 109.47220 * 295.09887 * 1 2 3 26 26 H 1.09001 * 109.46396 * 175.10487 * 1 2 3 27 27 H 1.08998 * 109.47214 * 65.29008 * 3 2 1 28 28 H 1.08997 * 109.47048 * 185.29538 * 3 2 1 29 29 H 1.08995 * 109.46475 * 305.29183 * 3 2 1 30 30 H 1.09010 * 109.47073 * 60.00356 * 4 2 1 31 31 H 1.08998 * 109.47459 * 180.02562 * 4 2 1 32 32 H 1.08996 * 109.47481 * 300.00649 * 4 2 1 33 33 H 1.09003 * 109.58459 * 246.19937 * 9 8 5 34 34 H 1.08996 * 109.58532 * 6.62823 * 9 8 5 35 35 H 1.08997 * 109.63025 * 294.86666 * 10 9 8 36 36 H 1.09000 * 109.43385 * 174.72219 * 10 9 8 37 37 H 1.08998 * 109.46101 * 58.53334 * 11 10 9 38 38 H 1.00901 * 111.00107 * 151.11111 * 12 11 10 39 39 H 1.08998 * 109.46985 * 299.99667 * 13 12 11 40 40 H 1.08998 * 109.47229 * 59.99486 * 13 12 11 41 41 H 0.96999 * 119.99872 * 179.97438 * 17 16 14 42 42 H 1.09001 * 109.49374 * 301.41465 * 22 11 10 43 43 H 1.08995 * 109.52303 * 181.33390 * 22 11 10 44 44 H 1.09001 * 109.58145 * 353.37245 * 23 8 5 45 45 H 1.08993 * 109.58627 * 113.65285 * 23 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 16 2.1348 -0.8552 -1.4810 6 8 3.5477 -0.7411 -1.5807 7 8 1.4890 -2.1122 -1.6295 8 7 1.5618 0.0500 -2.7438 9 6 2.3597 1.1529 -3.2969 10 6 2.4997 0.9425 -4.8122 11 6 1.1077 0.8016 -5.4325 12 7 1.2343 0.6363 -6.8867 13 6 1.3343 1.9391 -7.5579 14 6 1.4632 1.7296 -9.0447 15 1 1.4705 0.7288 -9.4504 16 6 1.5717 2.8157 -9.8871 17 7 1.5623 4.0346 -9.3930 18 14 1.7322 2.5561 -11.7299 19 1 0.5388 1.8296 -12.2332 20 1 1.8319 3.8732 -12.4086 21 1 2.9527 1.7591 -12.0132 22 6 0.4046 -0.4217 -4.8396 23 6 0.2433 -0.2304 -3.3284 24 1 -0.3633 0.5879 -0.8429 25 1 -0.3633 0.4359 0.9306 26 1 -0.3632 -1.0240 -0.0877 27 1 1.7561 1.9283 0.9335 28 1 3.1258 1.4440 -0.0948 29 1 1.6013 1.9829 -0.8388 30 1 1.6767 -1.7489 1.2494 31 1 3.1300 -0.7207 1.2496 32 1 1.6767 -0.2073 2.1393 33 1 1.8580 2.1006 -3.1016 34 1 3.3467 1.1574 -2.8346 35 1 3.0769 0.0382 -5.0046 36 1 3.0087 1.8002 -5.2520 37 1 0.5226 1.6959 -5.2185 38 1 0.4668 0.0964 -7.2574 39 1 0.4391 2.5248 -7.3494 40 1 2.2110 2.4715 -7.1890 41 1 1.6391 4.7987 -9.9856 42 1 1.0017 -1.3132 -5.0319 43 1 -0.5773 -0.5356 -5.2988 44 1 -0.1664 -1.1388 -2.8867 45 1 -0.4281 0.6057 -3.1333 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584835105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:22 Heat of formation + Delta-G solvation = -84.628679 kcal Electronic energy + Delta-G solvation = -24399.595077 eV Core-core repulsion = 20964.561241 eV Total energy + Delta-G solvation = -3435.033836 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.62595 -37.32640 -36.82461 -36.04594 -34.99190 -32.62758 -30.98332 -30.16860 -27.84309 -27.78168 -26.28554 -23.42958 -23.25756 -21.87703 -21.23177 -20.03606 -18.57811 -17.66221 -16.86275 -16.36080 -16.13683 -14.80831 -14.77014 -14.70686 -14.66623 -14.31797 -14.28219 -13.79400 -13.67502 -13.49549 -13.02677 -12.83738 -12.78791 -12.35503 -12.28104 -12.19489 -12.12762 -12.11379 -11.75563 -11.64498 -11.57760 -11.53909 -11.16362 -11.00628 -10.85511 -10.63808 -10.52236 -10.29422 -10.17062 -9.75416 -9.17675 -8.95727 -8.47285 -7.28458 -6.03081 -4.04720 0.09012 2.49858 3.34086 3.37803 3.41338 3.70587 3.82480 4.05187 4.35308 4.43058 4.51826 4.64111 4.95891 5.02643 5.03860 5.11512 5.17779 5.24595 5.26332 5.28092 5.32914 5.34886 5.41338 5.51451 5.54170 5.60465 5.66109 5.72235 5.75654 5.85976 6.01712 6.03628 6.17830 6.40550 6.49508 6.70105 6.76282 7.27350 7.42290 7.80053 8.14418 8.42083 8.63097 9.04717 9.60277 11.07960 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.035286 B = 0.003054 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.328059 B = 9165.829996 C = 9288.716234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.564 4.564 3 C -0.135 4.135 4 C -0.138 4.138 5 S 2.612 3.388 6 O -0.952 6.952 7 O -0.955 6.955 8 N -0.992 5.992 9 C 0.118 3.882 10 C -0.116 4.116 11 C 0.089 3.911 12 N -0.688 5.688 13 C 0.196 3.804 14 C -0.515 4.515 15 H 0.061 0.939 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.132 4.132 23 C 0.123 3.877 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.036 0.964 38 H 0.329 0.671 39 H -0.015 1.015 40 H 0.028 0.972 41 H 0.262 0.738 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.967 -6.094 22.758 23.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.654 4.654 3 C -0.193 4.193 4 C -0.196 4.196 5 S 2.705 3.295 6 O -0.943 6.943 7 O -0.945 6.945 8 N -0.831 5.831 9 C -0.007 4.007 10 C -0.156 4.156 11 C -0.021 4.021 12 N -0.318 5.318 13 C 0.069 3.931 14 C -0.553 4.553 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.727 3.273 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.171 4.171 23 C -0.003 4.003 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.054 0.946 38 H 0.147 0.853 39 H 0.003 0.997 40 H 0.046 0.954 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.108 0.892 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.752 -6.759 22.655 23.707 hybrid contribution -1.184 0.930 -0.620 1.628 sum -2.936 -5.829 22.035 22.981 Atomic orbital electron populations 1.21711 0.89548 1.03628 1.04351 1.30168 1.06901 1.09562 1.18720 1.21718 1.01890 0.91255 1.04410 1.21711 1.01853 1.00327 0.95759 1.05234 0.74437 0.74588 0.75284 1.93570 1.28683 1.86617 1.85389 1.93559 1.77196 1.38849 1.84915 1.57599 1.28513 1.49102 1.47889 1.21687 0.95053 0.88171 0.95772 1.21907 0.98122 1.03387 0.92166 1.21361 0.94812 0.95511 0.90441 1.60656 1.49082 1.21403 1.00706 1.19572 0.95604 0.84415 0.93492 1.21170 1.49849 0.92950 0.91347 0.92049 1.24984 0.95390 0.95084 0.99101 1.69953 1.50759 0.97825 1.35309 0.86546 0.78716 0.77134 0.84899 1.20302 1.21376 1.20149 1.22051 1.01127 0.99923 0.94001 1.21469 0.82832 1.01222 0.94754 0.90868 0.90654 0.90907 0.90662 0.90901 0.90721 0.91196 0.91036 0.90089 0.91499 0.89070 0.91031 0.90402 0.94640 0.85340 0.99742 0.95373 0.92892 0.90690 0.91029 0.89207 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 8.22 37.16 0.31 -0.60 16 2 C -0.56 -4.55 1.05 -90.61 -0.09 -4.65 16 3 C -0.13 -0.96 8.08 37.16 0.30 -0.66 16 4 C -0.14 -0.97 8.48 37.16 0.32 -0.65 16 5 S 2.61 31.29 4.33 -107.50 -0.47 30.83 16 6 O -0.95 -14.15 16.39 -57.54 -0.94 -15.10 16 7 O -0.95 -13.77 16.30 -57.54 -0.94 -14.71 16 8 N -0.99 -11.65 2.90 -113.28 -0.33 -11.98 16 9 C 0.12 1.46 5.49 -3.48 -0.02 1.44 16 10 C -0.12 -1.86 5.60 -26.39 -0.15 -2.01 16 11 C 0.09 1.51 2.45 -67.67 -0.17 1.34 16 12 N -0.69 -14.48 6.30 -107.95 -0.68 -15.16 16 13 C 0.20 5.05 5.24 -4.98 -0.03 5.02 16 14 C -0.51 -14.55 9.32 -34.44 -0.32 -14.87 16 15 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 18 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.13 -1.81 5.36 -26.61 -0.14 -1.95 16 23 C 0.12 1.37 5.44 -3.71 -0.02 1.35 16 24 H 0.07 0.46 7.03 -51.93 -0.37 0.09 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.50 7.91 -51.93 -0.41 0.09 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.54 7.99 -51.93 -0.41 0.12 16 29 H 0.07 0.50 6.99 -51.93 -0.36 0.14 16 30 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.70 7.84 -51.93 -0.41 0.30 16 34 H 0.09 1.08 6.85 -51.93 -0.36 0.72 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.36 7.42 -51.93 -0.39 0.97 16 37 H 0.04 0.62 7.80 -51.93 -0.40 0.22 16 38 H 0.33 6.62 8.32 -39.29 -0.33 6.30 16 39 H -0.02 -0.41 8.05 -51.93 -0.42 -0.83 16 40 H 0.03 0.78 7.41 -51.93 -0.38 0.39 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 44 H 0.09 0.92 6.88 -51.93 -0.36 0.56 16 45 H 0.07 0.61 7.89 -51.93 -0.41 0.20 16 LS Contribution 360.14 15.07 5.43 5.43 Total: -1.00 -33.62 360.14 -10.25 -43.87 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.93 Total: 0.83 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -0.11 Total: -14.74 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.27 Total: -53.12 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -1.88 Total: -29.81 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 31.29 SS G_CDS: -0.47 Total: 30.83 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.62 -10.25 -43.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584835105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.755 kcal (2) G-P(sol) polarization free energy of solvation -33.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds