Wall clock time and date at job start Tue Mar 31 2020 09:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47028 * 2 1 4 4 C 1.53001 * 109.47247 * 119.99298 * 2 1 3 5 5 S 1.81401 * 109.47535 * 239.99525 * 2 1 3 6 6 O 1.42096 * 110.54442 * 173.58560 * 5 2 1 7 7 O 1.42097 * 110.53946 * 310.33861 * 5 2 1 8 8 N 1.65604 * 104.44710 * 61.96037 * 5 2 1 9 9 C 1.46929 * 120.62817 * 90.51083 * 8 5 2 10 10 C 1.53624 * 108.54239 * 126.36916 * 9 8 5 11 11 C 1.53035 * 109.24026 * 54.85464 * 10 9 8 12 12 N 1.46903 * 109.46161 * 178.48971 * 11 10 9 13 13 C 1.46892 * 111.00266 * 275.07279 * 12 11 10 14 14 C 1.50699 * 109.47465 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99987 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00394 * 179.97438 * 14 13 12 17 17 N 1.31526 * 119.99824 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00476 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47145 * 59.99733 * 18 16 14 20 20 H 1.48502 * 109.47538 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47281 * 300.00281 * 18 16 14 22 22 C 1.53047 * 109.54161 * 298.51111 * 11 10 9 23 23 C 1.46926 * 120.63259 * 270.79143 * 8 5 2 24 24 H 1.08999 * 109.46915 * 55.10564 * 1 2 3 25 25 H 1.08998 * 109.47220 * 295.09887 * 1 2 3 26 26 H 1.09001 * 109.46396 * 175.10487 * 1 2 3 27 27 H 1.08998 * 109.47214 * 65.29008 * 3 2 1 28 28 H 1.08997 * 109.47048 * 185.29538 * 3 2 1 29 29 H 1.08995 * 109.46475 * 305.29183 * 3 2 1 30 30 H 1.09010 * 109.47073 * 60.00356 * 4 2 1 31 31 H 1.08998 * 109.47459 * 180.02562 * 4 2 1 32 32 H 1.08996 * 109.47481 * 300.00649 * 4 2 1 33 33 H 1.09003 * 109.58459 * 246.19937 * 9 8 5 34 34 H 1.08996 * 109.58532 * 6.62823 * 9 8 5 35 35 H 1.08997 * 109.63025 * 294.86666 * 10 9 8 36 36 H 1.09000 * 109.43385 * 174.72219 * 10 9 8 37 37 H 1.08998 * 109.46101 * 58.53334 * 11 10 9 38 38 H 1.00901 * 111.00107 * 151.11111 * 12 11 10 39 39 H 1.08998 * 109.46985 * 299.99667 * 13 12 11 40 40 H 1.08998 * 109.47229 * 59.99486 * 13 12 11 41 41 H 0.96999 * 119.99872 * 179.97438 * 17 16 14 42 42 H 1.09001 * 109.49374 * 301.41465 * 22 11 10 43 43 H 1.08995 * 109.52303 * 181.33390 * 22 11 10 44 44 H 1.09001 * 109.58145 * 353.37245 * 23 8 5 45 45 H 1.08993 * 109.58627 * 113.65285 * 23 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 16 2.1348 -0.8552 -1.4810 6 8 3.5477 -0.7411 -1.5807 7 8 1.4890 -2.1122 -1.6295 8 7 1.5618 0.0500 -2.7438 9 6 2.3597 1.1529 -3.2969 10 6 2.4997 0.9425 -4.8122 11 6 1.1077 0.8016 -5.4325 12 7 1.2343 0.6363 -6.8867 13 6 1.3343 1.9391 -7.5579 14 6 1.4632 1.7296 -9.0447 15 1 1.4705 0.7288 -9.4504 16 6 1.5717 2.8157 -9.8871 17 7 1.5623 4.0346 -9.3930 18 14 1.7322 2.5561 -11.7299 19 1 0.5388 1.8296 -12.2332 20 1 1.8319 3.8732 -12.4086 21 1 2.9527 1.7591 -12.0132 22 6 0.4046 -0.4217 -4.8396 23 6 0.2433 -0.2304 -3.3284 24 1 -0.3633 0.5879 -0.8429 25 1 -0.3633 0.4359 0.9306 26 1 -0.3632 -1.0240 -0.0877 27 1 1.7561 1.9283 0.9335 28 1 3.1258 1.4440 -0.0948 29 1 1.6013 1.9829 -0.8388 30 1 1.6767 -1.7489 1.2494 31 1 3.1300 -0.7207 1.2496 32 1 1.6767 -0.2073 2.1393 33 1 1.8580 2.1006 -3.1016 34 1 3.3467 1.1574 -2.8346 35 1 3.0769 0.0382 -5.0046 36 1 3.0087 1.8002 -5.2520 37 1 0.5226 1.6959 -5.2185 38 1 0.4668 0.0964 -7.2574 39 1 0.4391 2.5248 -7.3494 40 1 2.2110 2.4715 -7.1890 41 1 1.6391 4.7987 -9.9856 42 1 1.0017 -1.3132 -5.0319 43 1 -0.5773 -0.5356 -5.2988 44 1 -0.1664 -1.1388 -2.8867 45 1 -0.4281 0.6057 -3.1333 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584835105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:21 Heat of formation + Delta-G solvation = -109.588670 kcal Electronic energy + Delta-G solvation = -24400.677423 eV Core-core repulsion = 20964.561241 eV Total energy + Delta-G solvation = -3436.116182 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.81553 -38.33989 -37.46116 -37.07210 -36.54506 -34.60536 -32.07799 -31.71473 -28.48559 -28.30403 -28.09876 -24.88919 -24.41334 -23.09674 -22.51562 -21.28143 -19.56672 -18.75364 -18.35695 -17.61350 -17.12097 -16.68798 -16.30387 -15.63768 -15.47180 -15.39443 -15.31192 -15.01580 -14.76715 -14.36806 -14.23516 -14.10177 -13.65318 -13.51081 -13.36203 -13.30228 -13.25988 -13.13970 -12.96315 -12.75199 -12.67649 -12.64961 -12.36208 -12.15464 -12.14869 -12.08317 -12.04007 -11.67931 -11.34207 -11.23885 -11.10095 -10.63952 -9.92835 -9.06942 -8.21746 -6.32296 -0.79997 1.41034 1.44296 1.52238 1.58050 2.40406 2.84928 3.03082 3.11425 3.39208 3.50514 3.60838 3.71677 3.91880 3.96778 4.20416 4.22334 4.40749 4.43634 4.54162 4.57971 4.68237 4.70288 4.72751 4.76494 4.77315 4.80268 4.83128 4.84841 4.98593 5.07769 5.12307 5.20168 5.22597 5.25369 5.27601 5.32688 5.43487 5.63441 5.65292 6.06487 6.51329 6.77254 6.92858 7.38585 8.89363 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.035286 B = 0.003054 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.328059 B = 9165.829996 C = 9288.716234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.531 4.531 3 C -0.141 4.141 4 C -0.148 4.148 5 S 2.599 3.401 6 O -0.992 6.992 7 O -0.987 6.987 8 N -0.995 5.995 9 C 0.127 3.873 10 C -0.117 4.117 11 C 0.088 3.912 12 N -0.693 5.693 13 C 0.214 3.786 14 C -0.538 4.538 15 H 0.061 0.939 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.970 3.030 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.271 1.271 22 C -0.127 4.127 23 C 0.123 3.877 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.035 0.965 38 H 0.335 0.665 39 H -0.038 1.038 40 H 0.001 0.999 41 H 0.265 0.735 42 H 0.058 0.942 43 H 0.086 0.914 44 H 0.102 0.898 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.353 -5.864 24.230 25.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.625 4.625 3 C -0.199 4.199 4 C -0.207 4.207 5 S 2.698 3.302 6 O -0.983 6.983 7 O -0.978 6.978 8 N -0.833 5.833 9 C 0.001 3.999 10 C -0.157 4.157 11 C -0.022 4.022 12 N -0.324 5.324 13 C 0.086 3.914 14 C -0.577 4.577 15 H 0.079 0.921 16 C -0.195 4.195 17 N -0.572 5.572 18 Si 0.795 3.205 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.197 1.197 22 C -0.167 4.167 23 C -0.002 4.002 24 H 0.100 0.900 25 H 0.117 0.883 26 H 0.089 0.911 27 H 0.117 0.883 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.153 0.847 39 H -0.020 1.020 40 H 0.019 0.981 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.105 0.895 44 H 0.120 0.880 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.127 -6.579 24.095 25.172 hybrid contribution -0.750 0.853 -0.976 1.497 sum -3.877 -5.726 23.119 24.131 Atomic orbital electron populations 1.21854 0.87911 1.04063 1.06021 1.29850 1.07975 1.09417 1.15303 1.21853 1.01680 0.90419 1.05990 1.21889 1.01971 1.00773 0.96055 1.05460 0.73588 0.74491 0.76634 1.93514 1.31276 1.87082 1.86404 1.93509 1.77263 1.41118 1.85904 1.57481 1.28520 1.48582 1.48688 1.21594 0.96059 0.89507 0.92691 1.21878 0.97180 1.01423 0.95218 1.21477 0.95675 0.97154 0.87918 1.60545 1.49682 1.18956 1.03177 1.19178 0.93218 0.85963 0.93046 1.21550 1.50203 0.93128 0.92784 0.92104 1.25907 0.94702 0.94693 1.04223 1.70074 1.51297 0.98691 1.37162 0.85428 0.79053 0.77358 0.78699 1.19097 1.20669 1.19651 1.22014 1.01067 0.97340 0.96264 1.21590 0.83022 1.03153 0.92428 0.89965 0.88346 0.91087 0.88309 0.91495 0.90046 0.91054 0.91265 0.87367 0.88856 0.88715 0.93012 0.92630 0.94675 0.84734 1.01997 0.98081 0.92613 0.92292 0.89539 0.87987 0.88505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.22 71.98 0.59 -0.79 16 2 C -0.53 -7.15 1.05 -10.79 -0.01 -7.16 16 3 C -0.14 -1.56 8.08 71.98 0.58 -0.98 16 4 C -0.15 -1.69 8.48 71.98 0.61 -1.08 16 5 S 2.60 60.47 4.33 -56.49 -0.24 60.23 16 6 O -0.99 -29.96 16.39 -127.65 -2.09 -32.05 16 7 O -0.99 -28.21 16.30 -127.65 -2.08 -30.29 16 8 N -0.99 -22.27 2.90 -512.29 -1.48 -23.75 16 9 C 0.13 3.07 5.49 86.51 0.48 3.55 16 10 C -0.12 -3.90 5.60 30.82 0.17 -3.73 16 11 C 0.09 3.00 2.45 44.94 0.11 3.11 16 12 N -0.69 -30.02 6.30 -495.45 -3.12 -33.14 16 13 C 0.21 11.44 5.24 85.56 0.45 11.88 16 14 C -0.54 -31.04 9.32 25.60 0.24 -30.80 16 15 H 0.06 3.43 7.81 -2.91 -0.02 3.41 16 16 C 0.00 0.18 5.46 84.65 0.46 0.64 16 17 N -0.93 -56.21 13.29 21.45 0.28 -55.93 16 18 Si 0.97 44.63 29.54 68.60 2.03 46.65 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 C -0.13 -3.42 5.36 30.67 0.16 -3.26 16 23 C 0.12 2.51 5.44 86.36 0.47 2.98 16 24 H 0.08 0.69 7.03 -2.39 -0.02 0.67 16 25 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.07 0.77 7.91 -2.39 -0.02 0.75 16 27 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 0.85 7.99 -2.39 -0.02 0.83 16 29 H 0.08 0.81 6.99 -2.39 -0.02 0.80 16 30 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 1.79 7.84 -2.39 -0.02 1.77 16 34 H 0.09 2.24 6.85 -2.39 -0.02 2.22 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.06 2.06 7.42 -2.39 -0.02 2.04 16 37 H 0.04 1.23 7.80 -2.39 -0.02 1.21 16 38 H 0.33 13.70 8.32 -89.69 -0.75 12.96 16 39 H -0.04 -2.14 8.05 -2.39 -0.02 -2.16 16 40 H 0.00 0.06 7.41 -2.39 -0.02 0.05 16 41 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 42 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.09 2.05 8.10 -2.39 -0.02 2.03 16 44 H 0.10 1.88 6.88 -2.39 -0.02 1.87 16 45 H 0.10 1.43 7.89 -2.39 -0.02 1.42 16 Total: -1.00 -74.80 360.14 -2.18 -76.99 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.21 Total: 16.93 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 4.31 Total: -25.63 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -4.32 Total: -112.82 kcal Atomic # 8 Polarization: -58.17 SS G_CDS: -4.17 Total: -62.34 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: 60.47 SS G_CDS: -0.24 Total: 60.23 kcal Total: -74.80 -2.18 -76.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584835105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.600 kcal (2) G-P(sol) polarization free energy of solvation -74.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds