Wall clock time and date at job start Tue Mar 31 2020 08:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47353 * 2 1 4 4 C 1.53006 * 109.47062 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46561 * 304.99427 * 4 3 2 6 6 C 1.53000 * 109.46867 * 184.99816 * 4 3 2 7 7 N 1.46494 * 109.47378 * 64.99494 * 4 3 2 8 8 C 1.34775 * 120.00246 * 204.99532 * 7 4 3 9 9 O 1.21362 * 119.99791 * 0.02562 * 8 7 4 10 10 C 1.49351 * 120.00189 * 180.02562 * 8 7 4 11 11 O 1.21384 * 119.99967 * 0.02562 * 10 8 7 12 12 N 1.34780 * 120.00345 * 180.02562 * 10 8 7 13 13 C 1.39741 * 120.00335 * 174.88986 * 12 10 8 14 14 C 1.39342 * 119.95067 * 145.76158 * 13 12 10 15 15 C 1.38470 * 120.41962 * 179.97438 * 14 13 12 16 16 C 1.37692 * 120.33107 * 359.97438 * 15 14 13 17 17 C 1.40744 * 119.89721 * 0.02562 * 16 15 14 18 18 C 1.41411 * 120.21006 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00189 * 205.17938 * 18 17 16 20 20 C 1.39929 * 119.99841 * 25.17876 * 18 17 16 21 21 N 1.30836 * 119.99898 * 16.79696 * 20 18 17 22 22 Si 1.86800 * 120.00333 * 196.80074 * 20 18 17 23 23 H 1.48500 * 109.46539 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47504 * 119.99691 * 22 20 18 25 25 H 1.48499 * 109.47190 * 239.99963 * 22 20 18 26 26 C 1.38300 * 119.95125 * 325.49153 * 13 12 10 27 27 H 1.09001 * 109.47605 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47244 * 300.00285 * 1 2 3 29 29 H 1.08998 * 109.47379 * 59.99905 * 1 2 3 30 30 H 1.08998 * 109.47379 * 120.00095 * 2 1 3 31 31 H 1.09007 * 109.47244 * 239.99715 * 2 1 3 32 32 H 1.09006 * 109.46920 * 300.00045 * 3 2 1 33 33 H 1.08992 * 109.47283 * 60.00066 * 3 2 1 34 34 H 1.08996 * 109.47062 * 179.97438 * 6 4 3 35 35 H 1.08999 * 109.46999 * 299.99939 * 6 4 3 36 36 H 1.09003 * 109.47382 * 59.99937 * 6 4 3 37 37 H 0.97003 * 119.99675 * 25.00453 * 7 4 3 38 38 H 0.97001 * 119.99253 * 354.89976 * 12 10 8 39 39 H 1.07998 * 119.78525 * 359.96248 * 14 13 12 40 40 H 1.08008 * 119.83233 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.05316 * 179.97438 * 16 15 14 42 42 H 0.96997 * 119.99680 * 179.97438 * 21 20 18 43 43 H 1.08000 * 120.16650 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9336 0.8529 0.8410 6 6 4.0801 2.8794 0.1250 7 7 4.0579 0.8588 -1.2526 8 6 5.2798 0.2923 -1.3010 9 8 5.9759 0.2652 -0.3072 10 6 5.7774 -0.3022 -2.5775 11 8 5.0814 -0.2748 -3.5716 12 7 6.9992 -0.8692 -2.6258 13 6 7.4224 -1.5194 -3.7881 14 6 8.7647 -1.4769 -4.1595 15 6 9.1948 -2.1181 -5.3089 16 6 8.2999 -2.8058 -6.0978 17 6 6.9409 -2.8576 -5.7355 18 6 6.0161 -3.5615 -6.5411 19 1 4.9708 -3.2902 -6.5261 20 6 6.4553 -4.6095 -7.3577 21 7 7.6248 -5.1568 -7.1471 22 14 5.3719 -5.2269 -8.7485 23 1 4.1083 -4.4473 -8.7750 24 1 6.0835 -5.0612 -10.0413 25 1 5.0623 -6.6634 -8.5345 26 6 6.5093 -2.2088 -4.5650 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 5.1701 2.8793 0.1250 35 1 3.7164 3.4689 -0.7166 36 1 3.7172 3.3137 1.0566 37 1 3.5014 0.8802 -2.0469 38 1 7.5846 -0.8261 -1.8536 39 1 9.4741 -0.9402 -3.5470 40 1 10.2375 -2.0793 -5.5877 41 1 8.6402 -3.3040 -6.9936 42 1 7.9291 -5.8835 -7.7129 43 1 5.4695 -2.2465 -4.2757 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590780991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:05 Heat of formation + Delta-G solvation = -68.876694 kcal Electronic energy + Delta-G solvation = -24173.563883 eV Core-core repulsion = 20603.769153 eV Total energy + Delta-G solvation = -3569.794730 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.63739 -38.95662 -37.17714 -36.90825 -34.67440 -33.67219 -33.01237 -31.05439 -29.87228 -28.48117 -27.00690 -25.38870 -24.81574 -22.18793 -21.47855 -20.97558 -20.75912 -19.79395 -18.40883 -17.47940 -16.83376 -15.84278 -15.64930 -15.45037 -15.01262 -14.87386 -14.63102 -14.35766 -14.14849 -13.75950 -13.41883 -13.04027 -12.96799 -12.89928 -12.53906 -12.37641 -12.21685 -11.80482 -11.72324 -11.42649 -11.27611 -11.24107 -11.13956 -11.00046 -10.92075 -10.88971 -10.48044 -10.10834 -9.70404 -9.44228 -9.32815 -9.11474 -9.00871 -7.49900 -7.00179 -6.74963 -4.37186 1.54699 2.51593 2.74929 2.93041 3.08631 3.14809 3.18311 3.57386 3.88296 3.95216 4.34201 4.61509 4.64412 4.69975 4.73440 5.03716 5.10974 5.21891 5.31213 5.43622 5.50984 5.58412 5.66640 5.69701 5.84531 5.91583 5.96658 6.06593 6.20631 6.24670 6.35459 6.60320 6.84378 6.97598 7.01117 7.12718 7.22676 7.44872 7.64620 7.82786 7.90257 8.04350 8.08853 8.16614 8.45367 8.63875 8.89496 8.93604 10.18814 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.015744 B = 0.003291 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.046372 B = 8505.400065 C = 9974.365638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C -0.127 4.127 4 C 0.138 3.862 5 H 0.092 0.908 6 C -0.165 4.165 7 N -0.698 5.698 8 C 0.513 3.487 9 O -0.525 6.525 10 C 0.495 3.505 11 O -0.500 6.500 12 N -0.634 5.634 13 C 0.145 3.855 14 C -0.255 4.255 15 C -0.092 4.092 16 C -0.168 4.168 17 C 0.120 3.880 18 C -0.458 4.458 19 H 0.079 0.921 20 C 0.075 3.925 21 N -0.794 5.794 22 Si 0.908 3.092 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.275 1.275 26 C -0.208 4.208 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.413 0.587 38 H 0.410 0.590 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.120 0.880 42 H 0.280 0.720 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.605 10.270 11.627 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C -0.165 4.165 4 C 0.034 3.966 5 H 0.110 0.890 6 C -0.223 4.223 7 N -0.352 5.352 8 C 0.294 3.706 9 O -0.401 6.401 10 C 0.276 3.724 11 O -0.374 6.374 12 N -0.279 5.279 13 C 0.053 3.947 14 C -0.276 4.276 15 C -0.111 4.111 16 C -0.188 4.188 17 C 0.117 3.883 18 C -0.487 4.487 19 H 0.097 0.903 20 C -0.142 4.142 21 N -0.419 5.419 22 Si 0.733 3.267 23 H -0.183 1.183 24 H -0.197 1.197 25 H -0.200 1.200 26 C -0.230 4.230 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.249 0.751 38 H 0.246 0.754 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.138 0.862 42 H 0.091 0.909 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.496 10.079 11.584 17.549 hybrid contribution -0.311 -0.335 -0.551 0.715 sum -8.807 9.745 11.033 17.154 Atomic orbital electron populations 1.21763 0.95641 1.01843 1.01674 1.21573 0.96007 0.96338 1.02774 1.21947 0.93326 0.97890 1.03319 1.21123 0.93893 0.94637 0.86923 0.89037 1.22192 1.02307 0.95617 1.02201 1.45868 1.17071 1.57742 1.14478 1.20304 0.82483 0.78832 0.88997 1.90731 1.56025 1.57145 1.36176 1.20004 0.83396 0.80509 0.88513 1.90815 1.55664 1.55715 1.35212 1.43142 1.15774 1.52466 1.16473 1.17447 0.93879 0.96068 0.87283 1.20072 0.93271 1.12110 1.02176 1.20478 0.97730 0.98016 0.94836 1.21388 0.93743 1.02601 1.01063 1.17478 0.92568 0.88953 0.89348 1.19612 0.95951 1.13126 1.20027 0.90255 1.25911 0.95362 0.95569 0.97368 1.69832 1.18981 1.18937 1.34191 0.86257 0.81005 0.78813 0.80646 1.18343 1.19686 1.20010 1.20966 0.98276 1.06004 0.97722 0.92630 0.92864 0.92645 0.91831 0.91477 0.91056 0.90154 0.91862 0.92189 0.91410 0.75081 0.75389 0.88984 0.88806 0.86176 0.90924 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.15 0.37 -0.72 16 2 C -0.13 -1.06 5.82 -26.73 -0.16 -1.21 16 3 C -0.13 -0.91 4.75 -26.73 -0.13 -1.04 16 4 C 0.14 1.29 2.57 -67.93 -0.17 1.12 16 5 H 0.09 0.96 7.58 -51.93 -0.39 0.57 16 6 C -0.16 -1.41 9.48 37.16 0.35 -1.05 16 7 N -0.70 -8.23 4.52 -54.27 -0.25 -8.48 16 8 C 0.51 7.78 7.85 -11.63 -0.09 7.69 16 9 O -0.52 -8.62 16.15 5.49 0.09 -8.54 16 10 C 0.50 9.07 7.61 -11.63 -0.09 8.98 16 11 O -0.50 -10.43 14.23 5.47 0.08 -10.35 16 12 N -0.63 -12.05 5.32 -10.34 -0.06 -12.10 16 13 C 0.14 3.30 6.25 -83.82 -0.52 2.78 16 14 C -0.26 -5.65 9.97 -39.09 -0.39 -6.04 16 15 C -0.09 -2.13 10.01 -39.70 -0.40 -2.52 16 16 C -0.17 -4.37 8.69 -38.83 -0.34 -4.71 16 17 C 0.12 3.25 5.57 -106.85 -0.59 2.65 16 18 C -0.46 -12.36 9.05 -37.74 -0.34 -12.71 16 19 H 0.08 2.10 7.90 -52.49 -0.41 1.69 16 20 C 0.08 1.90 5.16 -17.34 -0.09 1.81 16 21 N -0.79 -20.46 10.94 55.55 0.61 -19.85 16 22 Si 0.91 18.80 29.59 -169.99 -5.03 13.77 16 23 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 C -0.21 -5.33 8.39 -38.67 -0.32 -5.66 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.65 7.75 -51.92 -0.40 0.24 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.41 4.61 8.07 -40.82 -0.33 4.28 16 38 H 0.41 6.77 8.30 -40.82 -0.34 6.43 16 39 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 40 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 41 H 0.12 3.19 6.17 -52.49 -0.32 2.87 16 42 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 43 H 0.11 2.74 6.48 -52.49 -0.34 2.40 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -29.72 363.10 -8.33 -38.05 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -6.33 Total: 12.65 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -2.92 Total: -10.63 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.31 Total: -40.43 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.17 Total: -18.89 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.72 -8.33 -38.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590780991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.831 kcal (2) G-P(sol) polarization free energy of solvation -29.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds