Wall clock time and date at job start Tue Mar 31 2020 08:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46973 * 2 1 4 4 C 1.52997 * 109.46962 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47155 * 55.00219 * 4 3 2 6 6 C 1.53001 * 109.47366 * 175.00410 * 4 3 2 7 7 S 1.81400 * 109.47505 * 295.00135 * 4 3 2 8 8 O 1.42101 * 110.54042 * 68.81582 * 7 4 3 9 9 O 1.42101 * 110.54219 * 292.07270 * 7 4 3 10 10 N 1.65598 * 104.45372 * 180.44281 * 7 4 3 11 11 C 1.46502 * 119.99886 * 293.39638 * 10 7 4 12 12 C 1.53039 * 109.45836 * 216.24850 * 11 10 7 13 13 C 1.53190 * 109.31377 * 178.61434 * 12 11 10 14 14 N 1.46918 * 108.89377 * 54.56091 * 13 12 11 15 15 C 1.36942 * 120.63513 * 126.46789 * 14 13 12 16 16 H 1.08003 * 119.99606 * 329.81357 * 15 14 13 17 17 C 1.38804 * 120.00454 * 149.80917 * 15 14 13 18 18 N 1.31616 * 120.00161 * 162.24348 * 17 15 14 19 19 Si 1.86806 * 119.99902 * 342.24514 * 17 15 14 20 20 H 1.48493 * 109.47003 * 90.93870 * 19 17 15 21 21 H 1.48501 * 109.47128 * 210.93864 * 19 17 15 22 22 H 1.48494 * 109.47095 * 330.93825 * 19 17 15 23 23 C 1.46968 * 118.71697 * 306.64259 * 14 13 12 24 24 C 1.53040 * 109.46253 * 96.17741 * 11 10 7 25 25 H 1.08998 * 109.47357 * 299.99887 * 1 2 3 26 26 H 1.09008 * 109.47051 * 60.00083 * 1 2 3 27 27 H 1.08998 * 109.47353 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47357 * 240.00113 * 2 1 3 29 29 H 1.09003 * 109.46707 * 120.00227 * 2 1 3 30 30 H 1.09001 * 109.47258 * 60.00329 * 3 2 1 31 31 H 1.08997 * 109.47572 * 300.00160 * 3 2 1 32 32 H 1.08998 * 109.47282 * 181.56303 * 6 4 3 33 33 H 1.09001 * 109.46753 * 301.55880 * 6 4 3 34 34 H 1.08996 * 109.47489 * 61.55240 * 6 4 3 35 35 H 0.97002 * 119.99736 * 113.39301 * 10 7 4 36 36 H 1.09001 * 109.44573 * 336.21252 * 11 10 7 37 37 H 1.09006 * 109.50103 * 58.65766 * 12 11 10 38 38 H 1.09003 * 109.49917 * 298.56265 * 12 11 10 39 39 H 1.09001 * 109.58598 * 174.41952 * 13 12 11 40 40 H 1.08998 * 109.58281 * 294.70205 * 13 12 11 41 41 H 0.96999 * 120.00214 * 179.97438 * 18 17 15 42 42 H 1.08992 * 109.46348 * 293.57093 * 23 14 13 43 43 H 1.09003 * 109.71057 * 173.28561 * 23 14 13 44 44 H 1.08996 * 109.49347 * 301.33903 * 24 11 10 45 45 H 1.09006 * 109.49250 * 61.40415 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0801 2.8795 -0.1250 7 16 4.1741 0.7199 1.5510 8 8 3.8869 -0.6710 1.5980 9 8 3.8684 1.5685 2.6490 10 7 5.8237 0.7924 1.4256 11 6 6.5182 -0.0168 0.4209 12 6 7.8507 -0.5061 0.9927 13 6 8.5581 -1.3801 -0.0477 14 7 8.6810 -0.6229 -1.3007 15 6 9.8990 -0.4717 -1.9080 16 1 10.8000 -0.4490 -1.3129 17 6 9.9758 -0.3475 -3.2883 18 7 11.0642 0.1390 -3.8458 19 14 8.5341 -0.8708 -4.3548 20 1 7.6309 0.2881 -4.5696 21 1 9.0378 -1.3554 -5.6650 22 1 7.7876 -1.9613 -3.6775 23 6 7.4721 -0.0278 -1.8876 24 6 6.7770 0.8311 -0.8266 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 5.1697 2.8771 -0.1524 33 1 3.6945 3.3229 -1.0430 34 1 3.7394 3.4621 0.7308 35 1 6.3301 1.3706 2.0173 36 1 5.9001 -0.8744 0.1553 37 1 7.6671 -1.0904 1.8945 38 1 8.4790 0.3508 1.2356 39 1 9.5499 -1.6497 0.3151 40 1 7.9748 -2.2842 -0.2227 41 1 11.1180 0.2255 -4.8105 42 1 6.7992 -0.8204 -2.2146 43 1 7.7453 0.5944 -2.7399 44 1 5.8291 1.1985 -1.2197 45 1 7.4150 1.6758 -0.5664 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593543653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:07 Heat of formation + Delta-G solvation = -94.050706 kcal Electronic energy + Delta-G solvation = -24825.092134 eV Core-core repulsion = 21389.649729 eV Total energy + Delta-G solvation = -3435.442405 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.79963 -38.22625 -37.55228 -37.01534 -36.35620 -33.93643 -33.18235 -31.89054 -31.23357 -27.74205 -26.57095 -24.44108 -23.68061 -23.44424 -22.38328 -21.27088 -20.19400 -19.09198 -18.65470 -17.78954 -17.59192 -16.86000 -15.93759 -15.90376 -15.84274 -15.54269 -15.08551 -15.02567 -14.69058 -14.51838 -14.36176 -14.11225 -14.04169 -13.68993 -13.39750 -13.30423 -13.18313 -13.02567 -12.97973 -12.74747 -12.63175 -12.48223 -12.23205 -12.09178 -11.95027 -11.90570 -11.77937 -11.65977 -11.52696 -11.30831 -11.15445 -10.73222 -10.28837 -8.88428 -8.14029 -5.49880 -0.75153 1.30796 1.44675 1.53110 1.68744 2.43777 2.73110 3.10189 3.13124 3.35262 3.43598 3.62735 3.76023 3.92647 3.94649 4.13481 4.19453 4.24175 4.33360 4.38388 4.46611 4.53538 4.63875 4.67641 4.75479 4.77527 4.82396 4.85086 4.90756 4.98945 5.02952 5.12580 5.16566 5.19025 5.21116 5.25693 5.28261 5.37738 5.50205 5.91297 6.09633 6.16401 6.95127 7.64230 8.05037 9.06079 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.019601 B = 0.004534 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.126685 B = 6173.487445 C = 6787.195225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.167 4.167 3 C -0.107 4.107 4 C -0.578 4.578 5 H 0.151 0.849 6 C -0.146 4.146 7 S 2.608 3.392 8 O -0.986 6.986 9 O -0.989 6.989 10 N -1.106 6.106 11 C 0.157 3.843 12 C -0.128 4.128 13 C 0.142 3.858 14 N -0.620 5.620 15 C -0.248 4.248 16 H 0.050 0.950 17 C -0.034 4.034 18 N -0.961 5.961 19 Si 0.946 3.054 20 H -0.267 1.267 21 H -0.315 1.315 22 H -0.259 1.259 23 C 0.115 3.885 24 C -0.148 4.148 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.423 0.577 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.037 0.963 41 H 0.261 0.739 42 H 0.037 0.963 43 H 0.056 0.944 44 H 0.090 0.910 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.592 4.096 8.169 22.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.205 4.205 3 C -0.146 4.146 4 C -0.691 4.691 5 H 0.169 0.831 6 C -0.204 4.204 7 S 2.704 3.296 8 O -0.976 6.976 9 O -0.980 6.980 10 N -0.865 5.865 11 C 0.050 3.950 12 C -0.169 4.169 13 C 0.016 3.984 14 N -0.345 5.345 15 C -0.378 4.378 16 H 0.068 0.932 17 C -0.228 4.228 18 N -0.607 5.607 19 Si 0.774 3.226 20 H -0.193 1.193 21 H -0.244 1.244 22 H -0.184 1.184 23 C -0.011 4.011 24 C -0.188 4.188 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.130 0.870 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.259 0.741 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.109 0.891 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.103 3.634 8.712 23.118 hybrid contribution 0.528 0.155 -1.166 1.290 sum -20.575 3.789 7.545 22.240 Atomic orbital electron populations 1.21757 0.93803 1.02551 1.02783 1.22079 0.98462 0.96362 1.03552 1.21583 0.88815 0.98160 1.06001 1.30365 1.07106 1.10292 1.21301 0.83104 1.21756 1.02517 0.90613 1.05507 1.05055 0.73158 0.74187 0.77217 1.93545 1.83749 1.32933 1.87404 1.93534 1.83624 1.69689 1.51111 1.55424 1.25224 1.58008 1.47799 1.20696 0.94672 0.92609 0.86997 1.22166 0.95162 1.00807 0.98725 1.21099 0.99221 0.92902 0.85143 1.44485 1.03823 1.60099 1.26067 1.18853 0.85512 1.43579 0.89856 0.93216 1.25976 0.99004 0.99854 0.97984 1.69945 1.30916 1.48946 1.10860 0.85934 0.79883 0.79506 0.77251 1.19296 1.24387 1.18379 1.21472 0.88114 0.95443 0.96021 1.22615 1.01417 0.99247 0.95558 0.92205 0.91145 0.92172 0.90443 0.92234 0.90226 0.87016 0.90424 0.88519 0.90591 0.74137 0.89203 0.89688 0.91347 0.92162 0.94501 0.92995 0.94505 0.92607 0.89145 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 71.98 0.71 -1.37 16 2 C -0.17 -2.87 5.62 30.59 0.17 -2.70 16 3 C -0.11 -1.56 4.68 30.59 0.14 -1.42 16 4 C -0.58 -9.53 2.41 30.59 0.07 -9.46 16 5 H 0.15 2.20 6.87 -2.39 -0.02 2.18 16 6 C -0.15 -2.05 8.67 71.98 0.62 -1.42 16 7 S 2.61 60.67 4.52 -56.49 -0.26 60.41 16 8 O -0.99 -28.83 15.10 -127.65 -1.93 -30.76 16 9 O -0.99 -27.71 17.94 -127.65 -2.29 -30.00 16 10 N -1.11 -24.27 5.05 -169.27 -0.86 -25.12 16 11 C 0.16 4.09 2.69 45.02 0.12 4.21 16 12 C -0.13 -3.63 5.62 30.67 0.17 -3.46 16 13 C 0.14 5.11 6.51 86.36 0.56 5.67 16 14 N -0.62 -27.34 2.74 -699.03 -1.92 -29.26 16 15 C -0.25 -13.61 10.03 84.03 0.84 -12.76 16 16 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 17 C -0.03 -1.90 5.26 84.86 0.45 -1.46 16 18 N -0.96 -59.26 13.97 21.65 0.30 -58.96 16 19 Si 0.95 44.63 24.33 68.60 1.67 46.30 16 20 H -0.27 -11.54 6.59 99.48 0.66 -10.89 16 21 H -0.31 -15.36 7.11 99.48 0.71 -14.65 16 22 H -0.26 -11.67 6.64 99.48 0.66 -11.00 16 23 C 0.11 4.37 4.19 86.35 0.36 4.74 16 24 C -0.15 -4.13 5.13 30.67 0.16 -3.97 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.28 5.63 -2.39 -0.01 1.27 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.11 6.64 -2.39 -0.02 1.09 16 33 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.04 8.07 -2.39 -0.02 1.02 16 35 H 0.42 8.03 8.81 -96.75 -0.85 7.18 16 36 H 0.09 2.35 7.42 -2.39 -0.02 2.33 16 37 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 38 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 2.23 7.93 -2.39 -0.02 2.21 16 40 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 42 H 0.04 1.34 7.00 -2.39 -0.02 1.32 16 43 H 0.06 2.36 4.66 -2.39 -0.01 2.35 16 44 H 0.09 1.91 4.95 -2.39 -0.01 1.90 16 45 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 Total: -1.00 -71.93 348.63 -0.86 -72.79 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.02 Total: 18.01 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 4.39 Total: -23.41 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -2.47 Total: -113.34 kcal Atomic # 8 Polarization: -56.54 SS G_CDS: -4.22 Total: -60.76 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.67 Total: 46.30 kcal Atomic # 16 Polarization: 60.67 SS G_CDS: -0.26 Total: 60.41 kcal Total: -71.93 -0.86 -72.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593543653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.262 kcal (2) G-P(sol) polarization free energy of solvation -71.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds