Wall clock time and date at job start Tue Mar 31 2020 07:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00216 * 2 1 4 4 C 1.50698 * 109.47410 * 275.00554 * 3 2 1 5 5 H 1.08004 * 119.99981 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00263 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99525 * 359.97438 * 6 4 3 8 8 Si 1.86791 * 120.00347 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47227 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47487 * 119.99770 * 8 6 4 11 11 H 1.48506 * 109.47426 * 239.99887 * 8 6 4 12 12 S 1.65596 * 120.00147 * 180.02562 * 2 1 3 13 13 O 1.42105 * 106.40606 * 156.45798 * 12 2 1 14 14 O 1.42098 * 106.40293 * 23.53749 * 12 2 1 15 15 N 1.65602 * 107.21744 * 269.99780 * 12 2 1 16 16 C 1.46502 * 119.99746 * 65.00111 * 15 12 2 17 17 H 1.08991 * 115.56297 * 359.30921 * 16 15 12 18 18 C 1.52999 * 117.49463 * 213.61923 * 16 15 12 19 19 C 1.52996 * 117.49537 * 144.99964 * 16 15 12 20 20 H 1.09000 * 117.52335 * 0.02562 * 19 16 15 21 21 C 1.53005 * 117.49880 * 214.97407 * 19 16 15 22 22 C 1.52997 * 109.47452 * 174.98919 * 21 19 16 23 23 C 1.53006 * 109.47127 * 59.99878 * 22 21 19 24 24 C 1.52999 * 109.46991 * 300.00562 * 22 21 19 25 25 C 1.52997 * 109.47232 * 179.97438 * 22 21 19 26 26 H 1.08996 * 109.46983 * 269.99576 * 1 2 3 27 27 H 1.08997 * 109.46737 * 29.99805 * 1 2 3 28 28 H 1.09003 * 109.47114 * 149.99544 * 1 2 3 29 29 H 1.09004 * 109.46729 * 35.00441 * 3 2 1 30 30 H 1.09002 * 109.47032 * 154.99814 * 3 2 1 31 31 H 0.97002 * 119.99800 * 180.02562 * 7 6 4 32 32 H 0.97003 * 119.99988 * 244.99540 * 15 12 2 33 33 H 1.08997 * 117.49791 * 145.02110 * 18 16 15 34 34 H 1.09000 * 117.52282 * 359.97438 * 18 16 15 35 35 H 1.09002 * 109.46935 * 54.98794 * 21 19 16 36 36 H 1.09001 * 109.46812 * 294.99136 * 21 19 16 37 37 H 1.09001 * 109.46801 * 300.00272 * 23 22 21 38 38 H 1.09001 * 109.46998 * 59.99868 * 23 22 21 39 39 H 1.09000 * 109.47050 * 180.02562 * 23 22 21 40 40 H 1.09000 * 109.47160 * 179.97438 * 24 22 21 41 41 H 1.09002 * 109.46719 * 299.99711 * 24 22 21 42 42 H 1.08993 * 109.47839 * 59.99553 * 24 22 21 43 43 H 1.09001 * 109.47375 * 299.99867 * 25 22 21 44 44 H 1.09002 * 109.46777 * 60.00422 * 25 22 21 45 45 H 1.09000 * 109.47140 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.3414 1.7658 -1.4153 5 1 1.9289 1.1937 -2.2332 6 6 3.0007 2.9505 -1.6664 7 7 3.5035 3.6469 -0.6705 8 14 3.1796 3.5662 -3.4208 9 1 2.5320 2.6065 -4.3507 10 1 2.5290 4.8950 -3.5478 11 1 4.6207 3.6864 -3.7587 12 16 2.2930 -1.4341 -0.0006 13 8 3.5760 -1.1565 -0.5450 14 8 1.4114 -2.4062 -0.5454 15 7 2.5382 -1.8593 1.5810 16 6 1.3947 -2.1788 2.4392 17 1 0.4158 -2.1024 1.9662 18 6 1.4955 -1.8036 3.9190 19 6 1.5864 -3.2705 3.4939 20 1 2.5632 -3.7509 3.5498 21 6 0.3891 -4.1713 3.8039 22 6 0.8154 -5.2673 4.7826 23 6 1.3205 -4.6269 6.0772 24 6 1.9339 -6.1029 4.1569 25 6 -0.3820 -6.1677 5.0931 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6502 2.0043 0.5895 30 1 3.1858 1.1177 0.4343 31 1 3.9670 4.4805 -0.8470 32 1 3.4389 -1.8968 1.9391 33 1 0.5829 -1.4802 4.4196 34 1 2.4126 -1.3193 4.2545 35 1 0.0293 -4.6275 2.8817 36 1 -0.4077 -3.5759 4.2497 37 1 2.1734 -3.9852 5.8562 38 1 0.5237 -4.0315 6.5229 39 1 1.6246 -5.4077 6.7742 40 1 2.2379 -6.8835 4.8543 41 1 1.5740 -6.5592 3.2347 42 1 2.7868 -5.4613 3.9361 43 1 -1.1786 -5.5721 5.5391 44 1 -0.7422 -6.6240 4.1711 45 1 -0.0782 -6.9488 5.7900 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593628372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:01 Heat of formation + Delta-G solvation = -73.157437 kcal Electronic energy + Delta-G solvation = -23876.069489 eV Core-core repulsion = 20441.533084 eV Total energy + Delta-G solvation = -3434.536405 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.09996 -36.73070 -36.43936 -35.47570 -35.15746 -32.43122 -32.08436 -27.77560 -27.59199 -27.45232 -27.26898 -25.06029 -22.29565 -22.05272 -21.09334 -19.28596 -18.60460 -17.29944 -16.72550 -16.47833 -16.22656 -15.20486 -14.82839 -14.70850 -14.60236 -14.26173 -13.62942 -13.44826 -13.30684 -13.27252 -12.57995 -12.48052 -12.32159 -12.17350 -11.96018 -11.91370 -11.84168 -11.65817 -11.58634 -11.53601 -11.41241 -11.14473 -11.07360 -10.92766 -10.82757 -10.68856 -10.62749 -10.49262 -10.01663 -9.97141 -9.73105 -8.80798 -8.44450 -8.05641 -6.06227 -4.10079 1.22137 3.31299 3.38903 3.43173 3.47393 3.77379 4.15594 4.42624 4.45531 4.58120 4.64463 4.81372 4.92406 4.95317 5.07828 5.22637 5.26725 5.29244 5.37769 5.43535 5.45636 5.59047 5.64687 5.67457 5.68675 5.76719 5.79923 5.84930 5.91029 5.98992 6.06884 6.14912 6.18993 6.20097 6.28164 6.39686 6.56390 7.08739 7.26750 7.42785 7.61998 7.91592 8.20913 8.92751 9.55181 11.02446 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.032652 B = 0.003209 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.315057 B = 8722.318636 C = 8878.900079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.994 5.994 3 C 0.258 3.742 4 C -0.528 4.528 5 H 0.061 0.939 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 S 2.783 3.217 13 O -0.963 6.963 14 O -0.996 6.996 15 N -1.104 6.104 16 C 0.097 3.903 17 H 0.130 0.870 18 C -0.185 4.185 19 C -0.160 4.160 20 H 0.110 0.890 21 C -0.080 4.080 22 C -0.067 4.067 23 C -0.139 4.139 24 C -0.145 4.145 25 C -0.142 4.142 26 H 0.038 0.962 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.035 0.965 30 H 0.037 0.963 31 H 0.263 0.737 32 H 0.412 0.588 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.815 -15.369 13.912 21.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.837 5.837 3 C 0.136 3.864 4 C -0.568 4.568 5 H 0.079 0.921 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.790 3.210 13 O -0.947 6.947 14 O -0.979 6.979 15 N -0.858 5.858 16 C -0.012 4.012 17 H 0.148 0.852 18 C -0.224 4.224 19 C -0.180 4.180 20 H 0.128 0.872 21 C -0.118 4.118 22 C -0.067 4.067 23 C -0.197 4.197 24 C -0.202 4.202 25 C -0.199 4.199 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.245 0.755 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.617 -15.669 13.069 21.450 hybrid contribution 0.507 0.769 -0.348 0.984 sum -6.109 -14.900 12.722 20.523 Atomic orbital electron populations 1.21379 0.80253 1.03540 1.00157 1.57578 1.14252 1.23282 1.88614 1.19049 0.90997 0.78748 0.97645 1.21543 1.35966 1.06287 0.92974 0.92112 1.24940 0.95120 0.96524 0.97517 1.69934 1.37411 1.15310 1.30869 0.86451 0.77998 0.78484 0.84568 1.19625 1.20963 1.20805 1.01927 0.73404 0.72935 0.72697 1.93648 1.40736 1.84884 1.75448 1.93529 1.67548 1.60133 1.76725 1.55909 1.13386 1.84680 1.31826 1.21322 0.90137 1.02401 0.87302 0.85194 1.23569 1.03786 0.97337 0.97749 1.22945 1.00732 0.90686 1.03684 0.87200 1.21269 0.95813 0.95721 0.98971 1.20515 0.95597 0.95126 0.95493 1.21869 1.01304 1.00261 0.96240 1.21950 0.98308 0.99456 1.00489 1.21874 0.97439 0.99193 1.01401 0.94304 0.90328 0.91584 0.94693 0.94488 0.92755 0.75532 0.88213 0.88454 0.91203 0.91555 0.92201 0.92816 0.93217 0.93004 0.92567 0.92247 0.92720 0.92647 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.58 10.68 59.85 0.64 2.22 16 2 N -0.99 -20.56 3.23 -123.05 -0.40 -20.95 16 3 C 0.26 6.47 5.08 -5.19 -0.03 6.44 16 4 C -0.53 -14.92 9.38 -34.44 -0.32 -15.25 16 5 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 8 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 12 S 2.78 55.14 6.08 -107.50 -0.65 54.48 16 13 O -0.96 -23.13 17.11 -57.17 -0.98 -24.11 16 14 O -1.00 -20.71 16.50 -57.17 -0.94 -21.65 16 15 N -1.10 -16.44 6.10 -4.90 -0.03 -16.47 16 16 C 0.10 1.21 6.21 -67.93 -0.42 0.79 16 17 H 0.13 1.59 8.11 -51.93 -0.42 1.17 16 18 C -0.18 -1.88 10.10 -26.73 -0.27 -2.15 16 19 C -0.16 -1.60 4.18 -90.62 -0.38 -1.98 16 20 H 0.11 1.09 6.06 -51.93 -0.31 0.78 16 21 C -0.08 -0.71 4.55 -26.73 -0.12 -0.83 16 22 C -0.07 -0.53 0.80 -154.51 -0.12 -0.65 16 23 C -0.14 -1.04 8.23 37.16 0.31 -0.73 16 24 C -0.14 -1.17 8.23 37.16 0.31 -0.87 16 25 C -0.14 -1.00 8.47 37.16 0.31 -0.69 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 28 H 0.07 1.06 7.02 -51.93 -0.36 0.69 16 29 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 30 H 0.04 0.99 7.61 -51.93 -0.40 0.59 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.41 5.44 8.96 -34.47 -0.31 5.13 16 33 H 0.10 0.89 8.03 -51.93 -0.42 0.47 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.54 7.87 -51.93 -0.41 0.13 16 37 H 0.06 0.47 7.20 -51.93 -0.37 0.10 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.50 6.14 -51.93 -0.32 0.18 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 375.26 15.07 5.66 5.66 Total: -1.00 -33.36 375.26 -9.76 -43.12 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -7.94 Total: 0.53 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.20 Total: -12.05 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: 0.31 Total: -62.92 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -1.92 Total: -45.76 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 55.14 SS G_CDS: -0.65 Total: 54.48 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.36 -9.76 -43.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593628372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.037 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds