Wall clock time and date at job start Tue Mar 31 2020 07:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00216 * 2 1 4 4 C 1.50698 * 109.47410 * 275.00554 * 3 2 1 5 5 H 1.08004 * 119.99981 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00263 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99525 * 359.97438 * 6 4 3 8 8 Si 1.86791 * 120.00347 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47227 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47487 * 119.99770 * 8 6 4 11 11 H 1.48506 * 109.47426 * 239.99887 * 8 6 4 12 12 S 1.65596 * 120.00147 * 180.02562 * 2 1 3 13 13 O 1.42105 * 106.40606 * 156.45798 * 12 2 1 14 14 O 1.42098 * 106.40293 * 23.53749 * 12 2 1 15 15 N 1.65602 * 107.21744 * 269.99780 * 12 2 1 16 16 C 1.46502 * 119.99746 * 65.00111 * 15 12 2 17 17 H 1.08991 * 115.56297 * 359.30921 * 16 15 12 18 18 C 1.52999 * 117.49463 * 213.61923 * 16 15 12 19 19 C 1.52996 * 117.49537 * 144.99964 * 16 15 12 20 20 H 1.09000 * 117.52335 * 0.02562 * 19 16 15 21 21 C 1.53005 * 117.49880 * 214.97407 * 19 16 15 22 22 C 1.52997 * 109.47452 * 174.98919 * 21 19 16 23 23 C 1.53006 * 109.47127 * 59.99878 * 22 21 19 24 24 C 1.52999 * 109.46991 * 300.00562 * 22 21 19 25 25 C 1.52997 * 109.47232 * 179.97438 * 22 21 19 26 26 H 1.08996 * 109.46983 * 269.99576 * 1 2 3 27 27 H 1.08997 * 109.46737 * 29.99805 * 1 2 3 28 28 H 1.09003 * 109.47114 * 149.99544 * 1 2 3 29 29 H 1.09004 * 109.46729 * 35.00441 * 3 2 1 30 30 H 1.09002 * 109.47032 * 154.99814 * 3 2 1 31 31 H 0.97002 * 119.99800 * 180.02562 * 7 6 4 32 32 H 0.97003 * 119.99988 * 244.99540 * 15 12 2 33 33 H 1.08997 * 117.49791 * 145.02110 * 18 16 15 34 34 H 1.09000 * 117.52282 * 359.97438 * 18 16 15 35 35 H 1.09002 * 109.46935 * 54.98794 * 21 19 16 36 36 H 1.09001 * 109.46812 * 294.99136 * 21 19 16 37 37 H 1.09001 * 109.46801 * 300.00272 * 23 22 21 38 38 H 1.09001 * 109.46998 * 59.99868 * 23 22 21 39 39 H 1.09000 * 109.47050 * 180.02562 * 23 22 21 40 40 H 1.09000 * 109.47160 * 179.97438 * 24 22 21 41 41 H 1.09002 * 109.46719 * 299.99711 * 24 22 21 42 42 H 1.08993 * 109.47839 * 59.99553 * 24 22 21 43 43 H 1.09001 * 109.47375 * 299.99867 * 25 22 21 44 44 H 1.09002 * 109.46777 * 60.00422 * 25 22 21 45 45 H 1.09000 * 109.47140 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.3414 1.7658 -1.4153 5 1 1.9289 1.1937 -2.2332 6 6 3.0007 2.9505 -1.6664 7 7 3.5035 3.6469 -0.6705 8 14 3.1796 3.5662 -3.4208 9 1 2.5320 2.6065 -4.3507 10 1 2.5290 4.8950 -3.5478 11 1 4.6207 3.6864 -3.7587 12 16 2.2930 -1.4341 -0.0006 13 8 3.5760 -1.1565 -0.5450 14 8 1.4114 -2.4062 -0.5454 15 7 2.5382 -1.8593 1.5810 16 6 1.3947 -2.1788 2.4392 17 1 0.4158 -2.1024 1.9662 18 6 1.4955 -1.8036 3.9190 19 6 1.5864 -3.2705 3.4939 20 1 2.5632 -3.7509 3.5498 21 6 0.3891 -4.1713 3.8039 22 6 0.8154 -5.2673 4.7826 23 6 1.3205 -4.6269 6.0772 24 6 1.9339 -6.1029 4.1569 25 6 -0.3820 -6.1677 5.0931 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6502 2.0043 0.5895 30 1 3.1858 1.1177 0.4343 31 1 3.9670 4.4805 -0.8470 32 1 3.4389 -1.8968 1.9391 33 1 0.5829 -1.4802 4.4196 34 1 2.4126 -1.3193 4.2545 35 1 0.0293 -4.6275 2.8817 36 1 -0.4077 -3.5759 4.2497 37 1 2.1734 -3.9852 5.8562 38 1 0.5237 -4.0315 6.5229 39 1 1.6246 -5.4077 6.7742 40 1 2.2379 -6.8835 4.8543 41 1 1.5740 -6.5592 3.2347 42 1 2.7868 -5.4613 3.9361 43 1 -1.1786 -5.5721 5.5391 44 1 -0.7422 -6.6240 4.1711 45 1 -0.0782 -6.9488 5.7900 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593628372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:00 Heat of formation + Delta-G solvation = -95.695588 kcal Electronic energy + Delta-G solvation = -23877.046817 eV Core-core repulsion = 20441.533084 eV Total energy + Delta-G solvation = -3435.513733 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.89507 -38.28867 -37.38583 -37.19641 -36.86784 -34.50987 -33.20899 -29.67414 -28.22117 -28.03365 -27.96453 -26.78484 -24.21906 -23.02620 -21.90440 -20.58557 -19.47466 -18.95428 -18.40207 -18.18681 -17.59258 -16.86026 -16.19565 -15.59877 -15.41594 -15.34913 -15.06217 -14.94946 -14.27783 -14.20463 -14.03959 -13.96959 -13.37290 -13.27815 -13.24820 -13.13473 -13.06276 -12.99469 -12.93691 -12.77612 -12.55512 -12.50105 -12.46213 -12.38851 -12.26597 -11.96523 -11.73532 -11.55595 -11.50257 -11.27929 -10.80766 -10.60713 -9.88234 -9.74905 -8.21357 -6.33187 -0.33967 1.37942 1.40548 1.52233 2.00420 2.39781 2.61092 2.94255 3.09538 3.42485 3.73342 3.83916 3.96329 4.02865 4.11145 4.11966 4.19904 4.32180 4.52126 4.71974 4.75943 4.80350 4.82136 4.86517 4.98918 5.01081 5.02629 5.05307 5.07041 5.16765 5.19239 5.20397 5.30290 5.32131 5.40715 5.46293 5.51335 5.60342 5.62011 5.69212 5.85050 6.07647 6.13486 6.75464 7.35777 8.86419 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.032652 B = 0.003209 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.315057 B = 8722.318636 C = 8878.900079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.001 6.001 3 C 0.273 3.727 4 C -0.550 4.550 5 H 0.051 0.949 6 C 0.011 3.989 7 N -0.924 5.924 8 Si 0.957 3.043 9 H -0.270 1.270 10 H -0.269 1.269 11 H -0.279 1.279 12 S 2.801 3.199 13 O -1.012 7.012 14 O -1.007 7.007 15 N -1.091 6.091 16 C 0.063 3.937 17 H 0.133 0.867 18 C -0.170 4.170 19 C -0.145 4.145 20 H 0.111 0.889 21 C -0.080 4.080 22 C -0.066 4.066 23 C -0.138 4.138 24 C -0.147 4.147 25 C -0.140 4.140 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.029 0.971 30 H 0.015 0.985 31 H 0.268 0.732 32 H 0.420 0.580 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.059 0.941 44 H 0.052 0.948 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.839 -15.886 14.935 23.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.843 5.843 3 C 0.149 3.851 4 C -0.589 4.589 5 H 0.069 0.931 6 C -0.188 4.188 7 N -0.564 5.564 8 Si 0.782 3.218 9 H -0.195 1.195 10 H -0.194 1.194 11 H -0.205 1.205 12 S 2.809 3.191 13 O -0.996 6.996 14 O -0.990 6.990 15 N -0.850 5.850 16 C -0.045 4.045 17 H 0.151 0.849 18 C -0.209 4.209 19 C -0.165 4.165 20 H 0.129 0.871 21 C -0.118 4.118 22 C -0.066 4.066 23 C -0.195 4.195 24 C -0.204 4.204 25 C -0.198 4.198 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.255 0.745 33 H 0.136 0.864 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.666 -16.198 14.098 22.801 hybrid contribution 0.793 0.843 -0.576 1.293 sum -6.873 -15.355 13.522 21.584 Atomic orbital electron populations 1.21617 0.78096 1.03628 1.02578 1.57457 1.15735 1.21864 1.89263 1.18596 0.90377 0.80261 0.95833 1.21878 1.36168 1.06635 0.94214 0.93054 1.25752 0.94790 0.96773 1.01500 1.70016 1.37891 1.15760 1.32714 0.85524 0.78033 0.78436 0.79818 1.19460 1.19372 1.20513 1.01130 0.72077 0.72510 0.73424 1.93576 1.43049 1.85494 1.77462 1.93506 1.67641 1.60138 1.77760 1.55397 1.14794 1.84217 1.30571 1.21666 0.89239 1.05501 0.88108 0.84913 1.23648 1.04694 0.97205 0.95368 1.22989 1.01400 0.90824 1.01320 0.87101 1.21306 0.95518 0.95907 0.99058 1.20507 0.95792 0.94899 0.95397 1.21852 1.01235 1.00373 0.96044 1.21970 0.98275 0.99657 1.00488 1.21859 0.97196 0.99247 1.01473 0.90715 0.91071 0.90656 0.95250 0.96660 0.92349 0.74492 0.86398 0.88387 0.91905 0.90425 0.92687 0.92342 0.92726 0.92265 0.93171 0.92763 0.92169 0.92905 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.83 10.68 127.77 1.36 4.19 16 2 N -1.00 -41.41 3.23 -543.21 -1.75 -43.16 16 3 C 0.27 13.94 5.08 85.63 0.43 14.38 16 4 C -0.55 -31.48 9.38 25.60 0.24 -31.24 16 5 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 6 C 0.01 0.65 5.46 84.65 0.46 1.11 16 7 N -0.92 -54.44 13.29 21.45 0.28 -54.16 16 8 Si 0.96 45.00 29.54 68.60 2.03 47.02 16 9 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 12 S 2.80 111.51 6.08 -56.49 -0.34 111.17 16 13 O -1.01 -49.82 17.11 -128.00 -2.19 -52.01 16 14 O -1.01 -41.55 16.50 -128.00 -2.11 -43.66 16 15 N -1.09 -31.89 6.10 -169.40 -1.03 -32.92 16 16 C 0.06 1.46 6.21 44.99 0.28 1.74 16 17 H 0.13 3.00 8.11 -2.39 -0.02 2.98 16 18 C -0.17 -3.04 10.10 30.59 0.31 -2.73 16 19 C -0.14 -2.62 4.18 -10.79 -0.05 -2.67 16 20 H 0.11 2.02 6.06 -2.39 -0.01 2.00 16 21 C -0.08 -1.25 4.55 30.60 0.14 -1.11 16 22 C -0.07 -0.90 0.80 -52.18 -0.04 -0.94 16 23 C -0.14 -1.74 8.23 71.98 0.59 -1.14 16 24 C -0.15 -2.17 8.23 71.98 0.59 -1.58 16 25 C -0.14 -1.69 8.47 71.98 0.61 -1.08 16 26 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 28 H 0.07 2.32 7.02 -2.39 -0.02 2.31 16 29 H 0.03 1.52 8.11 -2.38 -0.02 1.50 16 30 H 0.02 0.84 7.61 -2.39 -0.02 0.83 16 31 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.42 10.95 8.96 -96.74 -0.87 10.08 16 33 H 0.12 1.71 8.03 -2.39 -0.02 1.69 16 34 H 0.10 1.78 8.14 -2.39 -0.02 1.77 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.04 7.87 -2.39 -0.02 1.02 16 37 H 0.05 0.74 7.20 -2.39 -0.02 0.73 16 38 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 39 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.05 0.84 6.14 -2.39 -0.01 0.83 16 43 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -71.23 375.26 -0.09 -71.32 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.09 Total: 17.48 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 4.94 Total: -21.07 kcal Atomic # 7 Polarization: -127.74 SS G_CDS: -2.50 Total: -130.24 kcal Atomic # 8 Polarization: -91.38 SS G_CDS: -4.30 Total: -95.68 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Atomic # 16 Polarization: 111.51 SS G_CDS: -0.34 Total: 111.17 kcal Total: -71.23 -0.09 -71.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593628372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.372 kcal (2) G-P(sol) polarization free energy of solvation -71.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds