Wall clock time and date at job start Tue Mar 31 2020 08:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47235 * 2 1 4 4 C 1.53005 * 109.47234 * 240.00111 * 2 1 3 5 5 N 1.46903 * 109.47427 * 120.00414 * 2 1 3 6 6 C 1.48533 * 111.00194 * 172.62038 * 5 2 1 7 7 C 1.54931 * 103.22654 * 200.27581 * 6 5 2 8 8 C 1.54600 * 102.92313 * 37.41142 * 7 6 5 9 9 H 1.09005 * 110.39171 * 96.99902 * 8 7 6 10 10 N 1.46501 * 110.31090 * 219.12610 * 8 7 6 11 11 S 1.65602 * 119.99857 * 260.71446 * 10 8 7 12 12 O 1.42098 * 104.27931 * 308.92909 * 11 10 8 13 13 O 1.42097 * 104.27373 * 181.07320 * 11 10 8 14 14 C 1.81397 * 104.44882 * 65.00360 * 11 10 8 15 15 C 1.52994 * 109.47235 * 179.97438 * 14 11 10 16 16 C 1.50695 * 109.47308 * 179.97438 * 15 14 11 17 17 H 1.08003 * 120.00416 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00198 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99793 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00027 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47137 * 59.99909 * 20 18 16 22 22 H 1.48503 * 109.47032 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47255 * 299.99750 * 20 18 16 24 24 C 1.47901 * 111.00071 * 55.21670 * 5 2 1 25 25 H 1.08998 * 109.47401 * 299.99597 * 1 2 3 26 26 H 1.08992 * 109.47823 * 60.00175 * 1 2 3 27 27 H 1.09006 * 109.46892 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47450 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47227 * 300.00281 * 3 2 1 30 30 H 1.09001 * 109.46974 * 60.00241 * 3 2 1 31 31 H 1.09003 * 109.46694 * 292.83060 * 4 2 1 32 32 H 1.09002 * 109.46615 * 52.82357 * 4 2 1 33 33 H 1.08994 * 109.47219 * 172.82568 * 4 2 1 34 34 H 1.08995 * 110.66393 * 318.70867 * 6 5 2 35 35 H 1.08998 * 110.66648 * 81.67456 * 6 5 2 36 36 H 1.09001 * 110.72709 * 279.06018 * 7 6 5 37 37 H 1.08996 * 110.72548 * 155.76925 * 7 6 5 38 38 H 0.97000 * 119.99935 * 80.71527 * 10 8 7 39 39 H 1.09004 * 109.47448 * 59.99243 * 14 11 10 40 40 H 1.09004 * 109.46978 * 299.99759 * 14 11 10 41 41 H 1.08994 * 109.47290 * 299.99952 * 15 14 11 42 42 H 1.09009 * 109.47190 * 59.99870 * 15 14 11 43 43 H 0.97006 * 119.99667 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.91623 * 26.49924 * 24 5 2 45 45 H 1.08998 * 110.08687 * 265.29307 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0197 -0.6926 1.1994 6 6 3.4937 -0.8685 1.1479 7 6 3.7484 -2.0207 2.1519 8 6 2.5350 -2.9515 1.9252 9 1 2.7997 -3.7620 1.2461 10 7 2.0636 -3.4926 3.2023 11 16 2.5049 -5.0193 3.6681 12 8 2.1874 -5.8332 2.5474 13 8 1.8540 -5.2064 4.9173 14 6 4.3020 -4.9215 3.8951 15 6 4.8359 -6.2871 4.3320 16 6 6.3289 -6.2060 4.5200 17 1 6.8454 -5.2738 4.3449 18 6 7.0357 -7.3222 4.9145 19 7 6.4069 -8.4575 5.1272 20 14 8.8863 -7.2215 5.1481 21 1 9.1993 -6.2116 6.1908 22 1 9.4046 -8.5470 5.5721 23 1 9.5261 -6.8257 3.8678 24 6 1.4538 -2.0559 1.2925 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.7851 -1.7793 -1.1874 32 1 1.5756 -0.2868 -2.1346 33 1 3.1224 -0.6114 -1.3158 34 1 3.8122 -1.1544 0.1455 35 1 4.0011 0.0420 1.4665 36 1 3.7604 -1.6452 3.1751 37 1 4.6795 -2.5370 1.9184 38 1 1.4929 -2.9567 3.7751 39 1 4.5318 -4.1801 4.6604 40 1 4.7716 -4.6311 2.9553 41 1 4.3663 -6.5771 5.2718 42 1 4.6061 -7.0288 3.5669 43 1 6.9041 -9.2427 5.4051 44 1 1.2036 -2.4228 0.2971 45 1 0.5629 -2.0493 1.9204 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594801277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:45 Heat of formation + Delta-G solvation = -103.916196 kcal Electronic energy + Delta-G solvation = -23990.433507 eV Core-core repulsion = 20554.563302 eV Total energy + Delta-G solvation = -3435.870205 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.90395 -38.17834 -37.18997 -36.98330 -35.88443 -33.80332 -33.12098 -30.35323 -29.03983 -28.24588 -27.60589 -27.42139 -23.65200 -23.10309 -21.84819 -20.44290 -19.63888 -19.16794 -18.34786 -17.61918 -17.03027 -17.00795 -16.52545 -16.40506 -15.56325 -15.23373 -15.11058 -15.08063 -14.52350 -14.43134 -14.13125 -13.73817 -13.39475 -13.35606 -13.20336 -13.13879 -13.11555 -12.93076 -12.89389 -12.78998 -12.63101 -12.55958 -12.24110 -12.17341 -12.10109 -12.08090 -11.83715 -11.74422 -11.67348 -11.41114 -11.16654 -10.62819 -10.35968 -9.24282 -8.24858 -6.38806 -0.67063 1.41713 1.45113 1.53161 1.83995 2.38977 2.81239 3.00303 3.08697 3.25726 3.54855 3.69895 3.97598 4.02084 4.02440 4.12663 4.14139 4.29394 4.34257 4.38092 4.46918 4.66059 4.70550 4.76288 4.77507 4.89713 4.95659 4.95787 5.03265 5.04577 5.08074 5.16949 5.26990 5.28959 5.29501 5.31098 5.42764 5.49898 5.69549 5.98141 6.07294 6.14319 6.21874 6.74962 7.31383 8.87293 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021193 B = 0.003426 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.867633 B = 8171.150120 C = 9050.761274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.087 3.913 3 C -0.131 4.131 4 C -0.184 4.184 5 N -0.508 5.508 6 C 0.032 3.968 7 C -0.149 4.149 8 C 0.130 3.870 9 H 0.093 0.907 10 N -1.096 6.096 11 S 2.617 3.383 12 O -0.999 6.999 13 O -1.001 7.001 14 C -0.584 4.584 15 C 0.020 3.980 16 C -0.538 4.538 17 H 0.078 0.922 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.973 3.027 21 H -0.263 1.263 22 H -0.286 1.286 23 H -0.262 1.262 24 C 0.032 3.968 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.426 0.574 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.005 0.995 42 H 0.006 0.994 43 H 0.267 0.733 44 H 0.064 0.936 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.021 21.403 -12.211 25.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.003 4.003 3 C -0.189 4.189 4 C -0.243 4.243 5 N -0.233 5.233 6 C -0.096 4.096 7 C -0.189 4.189 8 C 0.022 3.978 9 H 0.111 0.889 10 N -0.857 5.857 11 S 2.714 3.286 12 O -0.988 6.988 13 O -0.991 6.991 14 C -0.717 4.717 15 C -0.018 4.018 16 C -0.577 4.577 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.575 5.575 20 Si 0.797 3.203 21 H -0.188 1.188 22 H -0.211 1.211 23 H -0.186 1.186 24 C -0.097 4.097 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.263 0.737 39 H 0.162 0.838 40 H 0.160 0.840 41 H 0.023 0.977 42 H 0.024 0.976 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.705 20.716 -11.735 25.351 hybrid contribution 1.233 -0.571 -0.128 1.364 sum -7.472 20.146 -11.863 24.544 Atomic orbital electron populations 1.21898 0.93382 1.01982 1.02503 1.21324 0.95802 0.95157 0.87981 1.21771 1.01056 0.93804 1.02241 1.22533 1.02048 1.00808 0.98874 1.65071 1.05655 1.15271 1.37309 1.23334 0.88766 0.98812 0.98676 1.23199 0.97603 0.96353 1.01724 1.21853 0.95000 0.96934 0.83997 0.88861 1.55365 1.65259 1.35479 1.29601 1.04502 0.78101 0.73324 0.72639 1.93498 1.83631 1.68047 1.53672 1.93502 1.74354 1.85190 1.46035 1.30356 1.22047 1.07268 1.11985 1.18814 0.97905 0.89506 0.95613 1.21501 0.92347 0.97300 1.46575 0.90433 1.26121 1.04510 0.94883 0.94746 1.70101 1.38412 1.01772 1.47212 0.85371 0.78179 0.77464 0.79283 1.18800 1.21144 1.18647 1.23141 0.97560 0.88363 1.00661 0.92244 0.91113 0.92971 0.92523 0.91307 0.92377 0.92790 0.91050 0.91717 0.91981 0.88950 0.89263 0.89546 0.73745 0.83827 0.83955 0.97685 0.97550 0.92433 0.91755 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.27 71.98 0.60 -1.21 16 2 C 0.09 1.18 0.69 3.53 0.00 1.18 16 3 C -0.13 -1.54 8.48 71.98 0.61 -0.93 16 4 C -0.18 -2.35 7.59 71.98 0.55 -1.80 16 5 N -0.51 -8.26 5.09 -833.68 -4.24 -12.50 16 6 C 0.03 0.49 5.49 86.65 0.48 0.96 16 7 C -0.15 -2.67 6.78 31.80 0.22 -2.45 16 8 C 0.13 2.74 3.56 45.87 0.16 2.90 16 9 H 0.09 2.10 7.54 -2.38 -0.02 2.08 16 10 N -1.10 -26.62 5.32 -165.72 -0.88 -27.50 16 11 S 2.62 92.39 5.44 -56.49 -0.31 92.08 16 12 O -1.00 -41.50 17.43 -127.65 -2.22 -43.72 16 13 O -1.00 -42.02 18.08 -127.65 -2.31 -44.33 16 14 C -0.58 -21.52 6.01 71.98 0.43 -21.09 16 15 C 0.02 1.06 4.98 29.84 0.15 1.21 16 16 C -0.54 -29.50 9.11 25.60 0.23 -29.27 16 17 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 18 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 19 N -0.94 -56.92 13.29 21.45 0.28 -56.64 16 20 Si 0.97 42.94 29.54 68.60 2.03 44.96 16 21 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 23 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 24 C 0.03 0.59 4.87 86.45 0.42 1.01 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.05 0.72 6.77 -2.38 -0.02 0.71 16 28 H 0.06 0.65 7.15 -2.39 -0.02 0.63 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.78 6.05 -2.39 -0.01 0.76 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.80 6.37 -2.39 -0.02 0.79 16 34 H 0.06 0.88 5.54 -2.39 -0.01 0.87 16 35 H 0.09 1.28 7.71 -2.39 -0.02 1.26 16 36 H 0.09 1.59 8.06 -2.39 -0.02 1.57 16 37 H 0.09 1.48 7.91 -2.39 -0.02 1.46 16 38 H 0.43 8.74 8.66 -96.74 -0.84 7.90 16 39 H 0.14 4.62 8.14 -2.39 -0.02 4.60 16 40 H 0.14 4.49 7.91 -2.39 -0.02 4.47 16 41 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 43 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 44 H 0.06 1.12 5.29 -2.39 -0.01 1.11 16 45 H 0.09 1.60 7.78 -2.39 -0.02 1.58 16 Total: -1.00 -73.69 360.71 -3.21 -76.90 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.13 Total: 20.01 kcal Atomic # 6 Polarization: -53.57 SS G_CDS: 4.31 Total: -49.26 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -4.84 Total: -96.64 kcal Atomic # 8 Polarization: -83.52 SS G_CDS: -4.53 Total: -88.05 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 92.39 SS G_CDS: -0.31 Total: 92.08 kcal Total: -73.69 -3.21 -76.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594801277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.013 kcal (2) G-P(sol) polarization free energy of solvation -73.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds