Wall clock time and date at job start Tue Mar 31 2020 09:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47402 * 2 1 4 4 C 1.53004 * 109.46830 * 119.99855 * 2 1 3 5 5 N 1.46500 * 109.47003 * 174.48842 * 4 2 1 6 6 C 1.46493 * 120.00065 * 280.87703 * 5 4 2 7 7 S 1.65605 * 119.99637 * 100.88081 * 5 4 2 8 8 O 1.42098 * 106.40436 * 342.63752 * 7 5 4 9 9 O 1.42101 * 106.39711 * 209.71988 * 7 5 4 10 10 N 1.65599 * 107.21935 * 96.17807 * 7 5 4 11 11 C 1.46924 * 120.63146 * 265.05667 * 10 7 5 12 12 C 1.53191 * 108.77393 * 126.41324 * 11 10 7 13 13 C 1.53046 * 109.31008 * 54.63483 * 12 11 10 14 14 C 1.53036 * 109.54019 * 298.63099 * 13 12 11 15 15 H 1.08995 * 109.52395 * 301.39905 * 14 13 12 16 16 C 1.50701 * 109.49941 * 181.31864 * 14 13 12 17 17 H 1.08000 * 119.99851 * 240.16921 * 16 14 13 18 18 C 1.37873 * 119.99906 * 60.16187 * 16 14 13 19 19 N 1.31515 * 119.99895 * 359.72383 * 18 16 14 20 20 Si 1.86797 * 120.00011 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47116 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47340 * 119.99948 * 20 18 16 23 23 H 1.48502 * 109.47211 * 240.00070 * 20 18 16 24 24 C 1.46928 * 120.62635 * 85.08262 * 10 7 5 25 25 H 1.09003 * 109.46765 * 300.00807 * 1 2 3 26 26 H 1.08998 * 109.46617 * 59.99891 * 1 2 3 27 27 H 1.08998 * 109.47302 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47124 * 239.99680 * 2 1 3 29 29 H 1.08997 * 109.47093 * 185.10703 * 3 2 1 30 30 H 1.09004 * 109.46535 * 305.10680 * 3 2 1 31 31 H 1.08996 * 109.47379 * 65.10230 * 3 2 1 32 32 H 1.08999 * 109.46979 * 54.48751 * 4 2 1 33 33 H 1.09005 * 109.47279 * 294.48951 * 4 2 1 34 34 H 1.09004 * 109.46977 * 270.00110 * 6 5 4 35 35 H 1.09004 * 109.47147 * 30.00326 * 6 5 4 36 36 H 1.09000 * 109.47197 * 150.00170 * 6 5 4 37 37 H 1.09004 * 109.58160 * 246.20304 * 11 10 7 38 38 H 1.09000 * 109.58476 * 6.62292 * 11 10 7 39 39 H 1.08999 * 109.49413 * 174.58023 * 12 11 10 40 40 H 1.08998 * 109.49740 * 294.68266 * 12 11 10 41 41 H 1.09006 * 109.45687 * 178.61135 * 13 12 11 42 42 H 1.08999 * 109.45911 * 58.65849 * 13 12 11 43 43 H 0.97001 * 119.99812 * 179.97438 * 19 18 16 44 44 H 1.08994 * 109.58925 * 113.80222 * 24 10 7 45 45 H 1.08997 * 109.59033 * 353.36877 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.4990 -0.8372 1.1849 6 6 4.1153 -1.8761 0.3561 7 16 4.4514 0.2061 2.0490 8 8 3.6245 1.3070 2.4003 9 8 5.6611 0.3453 1.3164 10 7 4.8479 -0.5521 3.4669 11 6 4.0584 -0.3229 4.6845 12 6 3.6111 -1.6769 5.2442 13 6 4.8371 -2.5699 5.4487 14 6 5.5273 -2.8075 4.1037 15 1 4.8260 -3.2734 3.4116 16 6 6.7156 -3.7132 4.3012 17 1 7.7062 -3.3680 4.0445 18 6 6.5380 -4.9824 4.8096 19 7 5.3323 -5.4007 5.1274 20 14 8.0109 -6.1048 5.0550 21 1 9.2467 -5.3999 4.6295 22 1 8.1193 -6.4727 6.4896 23 1 7.8375 -7.3343 4.2405 24 6 5.9964 -1.4662 3.5311 25 1 -0.3633 0.5140 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1262 1.4437 -0.0915 30 1 1.6040 1.9820 -0.8408 31 1 1.7534 1.9293 0.9321 32 1 1.5983 -1.7164 1.3000 33 1 1.7594 -0.1536 2.1366 34 1 4.2520 -2.7804 0.9492 35 1 3.4689 -2.0935 -0.4943 36 1 5.0835 -1.5275 -0.0032 37 1 4.6694 0.1945 5.4242 38 1 3.1829 0.2804 4.4442 39 1 3.1067 -1.5273 6.1988 40 1 2.9273 -2.1531 4.5415 41 1 4.5241 -3.5253 5.8701 42 1 5.5318 -2.0820 6.1323 43 1 5.2073 -6.2938 5.4847 44 1 6.7653 -1.0422 4.1767 45 1 6.3995 -1.6174 2.5298 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594802858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:44 Heat of formation + Delta-G solvation = -94.347677 kcal Electronic energy + Delta-G solvation = -25342.327771 eV Core-core repulsion = 21906.872488 eV Total energy + Delta-G solvation = -3435.455283 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -37.71098 -37.62498 -36.93341 -35.51548 -33.75558 -33.32542 -31.09675 -30.12354 -27.40284 -27.17661 -25.13731 -24.58715 -23.53292 -21.68722 -20.21076 -19.52520 -18.34424 -17.71622 -17.07352 -16.21699 -16.01112 -14.93449 -14.90659 -14.54188 -14.48233 -13.85092 -13.49262 -13.28067 -13.20813 -12.91458 -12.79745 -12.78116 -12.49958 -12.32887 -12.17655 -12.00534 -11.75990 -11.52214 -11.39614 -11.28345 -11.16196 -11.03074 -10.94755 -10.86516 -10.71497 -10.63526 -10.26111 -9.96973 -9.86478 -9.45098 -8.87018 -8.82908 -8.47499 -8.17526 -6.05707 -4.13019 0.92506 3.16577 3.25713 3.34581 3.38899 3.78763 4.38476 4.62270 4.73410 4.85105 4.92803 5.15453 5.23414 5.29191 5.46839 5.52631 5.63492 5.66332 5.69314 5.76212 5.82257 5.83605 5.87672 5.99850 6.01935 6.06211 6.10021 6.25174 6.26267 6.30698 6.41263 6.47950 6.58157 6.63121 6.67918 6.89014 7.06542 7.20789 7.41622 7.67002 7.89172 8.05411 8.35880 8.90997 9.52446 10.99407 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021414 B = 0.004608 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.222081 B = 6074.374008 C = 6191.676370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C -0.148 4.148 4 C 0.129 3.871 5 N -1.008 6.008 6 C 0.085 3.915 7 S 2.781 3.219 8 O -0.984 6.984 9 O -0.983 6.983 10 N -1.002 6.002 11 C 0.126 3.874 12 C -0.133 4.133 13 C -0.109 4.109 14 C 0.041 3.959 15 H 0.030 0.970 16 C -0.516 4.516 17 H 0.058 0.942 18 C 0.064 3.936 19 N -0.888 5.888 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.128 3.872 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.094 0.906 42 H 0.035 0.965 43 H 0.260 0.740 44 H 0.060 0.940 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.812 8.386 -6.871 13.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 C -0.205 4.205 4 C 0.003 3.997 5 N -0.846 5.846 6 C -0.061 4.061 7 S 2.791 3.209 8 O -0.968 6.968 9 O -0.967 6.967 10 N -0.843 5.843 11 C 0.000 4.000 12 C -0.172 4.172 13 C -0.147 4.147 14 C 0.021 3.979 15 H 0.048 0.952 16 C -0.555 4.555 17 H 0.076 0.924 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 C 0.004 3.996 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.112 0.888 42 H 0.054 0.946 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.606 9.103 -7.081 14.390 hybrid contribution 0.661 -1.204 0.292 1.404 sum -7.944 7.899 -6.789 13.100 Atomic orbital electron populations 1.21771 0.94618 1.01801 1.02017 1.21528 0.95857 0.97027 0.99069 1.21895 1.00249 0.95781 1.02583 1.21345 0.79057 1.01062 0.98218 1.57808 1.15847 1.49805 1.61171 1.21561 0.98446 0.91032 0.95061 1.01944 0.72825 0.73423 0.72713 1.93551 1.69305 1.49917 1.83995 1.93570 1.45657 1.85811 1.71654 1.58030 1.40384 1.61894 1.23965 1.21382 0.94324 0.97889 0.86407 1.21989 1.00132 0.95586 0.99479 1.21569 0.93850 0.99556 0.99759 1.18968 0.95975 0.89498 0.93449 0.95221 1.21160 0.93413 0.98168 1.42721 0.92388 1.24927 0.95677 0.97877 0.95240 1.69883 1.20654 1.18299 1.43851 0.86555 0.83112 0.80685 0.77752 1.19710 1.21075 1.21071 1.21764 0.85567 0.91092 1.01207 0.92364 0.92569 0.92533 0.90916 0.94002 0.92876 0.90993 0.90635 0.89796 0.91803 0.91234 0.90440 0.91855 0.90694 0.92714 0.92574 0.88802 0.94640 0.93054 0.92201 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.19 37.16 0.34 -0.93 16 2 C -0.11 -1.25 3.06 -90.62 -0.28 -1.53 16 3 C -0.15 -1.82 7.80 37.16 0.29 -1.53 16 4 C 0.13 1.60 4.92 -4.04 -0.02 1.58 16 5 N -1.01 -14.73 2.91 -121.76 -0.35 -15.08 16 6 C 0.08 1.15 10.65 59.84 0.64 1.78 16 7 S 2.78 48.34 5.28 -107.50 -0.57 47.78 16 8 O -0.98 -17.46 13.21 -57.17 -0.76 -18.21 16 9 O -0.98 -19.63 15.76 -57.17 -0.90 -20.53 16 10 N -1.00 -18.16 3.35 -113.52 -0.38 -18.54 16 11 C 0.13 2.08 6.40 -3.71 -0.02 2.06 16 12 C -0.13 -2.36 6.08 -26.61 -0.16 -2.52 16 13 C -0.11 -2.40 4.96 -26.69 -0.13 -2.53 16 14 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 15 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 16 C -0.52 -13.38 8.56 -34.44 -0.29 -13.67 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 19 N -0.89 -24.06 11.31 55.43 0.63 -23.43 16 20 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.13 2.61 5.58 -3.71 -0.02 2.59 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.76 7.62 -51.93 -0.40 0.37 16 29 H 0.04 0.58 6.97 -51.93 -0.36 0.22 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.94 7.45 -51.93 -0.39 0.56 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.05 7.23 -51.93 -0.38 0.68 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.75 7.56 -51.93 -0.39 0.36 16 36 H 0.08 1.09 7.09 -51.93 -0.37 0.72 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 1.12 6.99 -51.93 -0.36 0.75 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.09 2.34 6.04 -51.93 -0.31 2.02 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.07 1.42 7.27 -51.93 -0.38 1.05 16 LS Contribution 355.43 15.07 5.36 5.36 Total: -1.00 -29.26 355.43 -9.91 -39.17 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.95 Total: 0.37 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 0.04 Total: -12.36 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.11 Total: -57.05 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -1.66 Total: -38.75 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 48.34 SS G_CDS: -0.57 Total: 47.78 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.26 -9.91 -39.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594802858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.178 kcal (2) G-P(sol) polarization free energy of solvation -29.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds