Wall clock time and date at job start Tue Mar 31 2020 09:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47402 * 2 1 4 4 C 1.53004 * 109.46830 * 119.99855 * 2 1 3 5 5 N 1.46500 * 109.47003 * 174.48842 * 4 2 1 6 6 C 1.46493 * 120.00065 * 280.87703 * 5 4 2 7 7 S 1.65605 * 119.99637 * 100.88081 * 5 4 2 8 8 O 1.42098 * 106.40436 * 342.63752 * 7 5 4 9 9 O 1.42101 * 106.39711 * 209.71988 * 7 5 4 10 10 N 1.65599 * 107.21935 * 96.17807 * 7 5 4 11 11 C 1.46924 * 120.63146 * 265.05667 * 10 7 5 12 12 C 1.53191 * 108.77393 * 126.41324 * 11 10 7 13 13 C 1.53046 * 109.31008 * 54.63483 * 12 11 10 14 14 C 1.53036 * 109.54019 * 298.63099 * 13 12 11 15 15 H 1.08995 * 109.52395 * 301.39905 * 14 13 12 16 16 C 1.50701 * 109.49941 * 181.31864 * 14 13 12 17 17 H 1.08000 * 119.99851 * 240.16921 * 16 14 13 18 18 C 1.37873 * 119.99906 * 60.16187 * 16 14 13 19 19 N 1.31515 * 119.99895 * 359.72383 * 18 16 14 20 20 Si 1.86797 * 120.00011 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47116 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47340 * 119.99948 * 20 18 16 23 23 H 1.48502 * 109.47211 * 240.00070 * 20 18 16 24 24 C 1.46928 * 120.62635 * 85.08262 * 10 7 5 25 25 H 1.09003 * 109.46765 * 300.00807 * 1 2 3 26 26 H 1.08998 * 109.46617 * 59.99891 * 1 2 3 27 27 H 1.08998 * 109.47302 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47124 * 239.99680 * 2 1 3 29 29 H 1.08997 * 109.47093 * 185.10703 * 3 2 1 30 30 H 1.09004 * 109.46535 * 305.10680 * 3 2 1 31 31 H 1.08996 * 109.47379 * 65.10230 * 3 2 1 32 32 H 1.08999 * 109.46979 * 54.48751 * 4 2 1 33 33 H 1.09005 * 109.47279 * 294.48951 * 4 2 1 34 34 H 1.09004 * 109.46977 * 270.00110 * 6 5 4 35 35 H 1.09004 * 109.47147 * 30.00326 * 6 5 4 36 36 H 1.09000 * 109.47197 * 150.00170 * 6 5 4 37 37 H 1.09004 * 109.58160 * 246.20304 * 11 10 7 38 38 H 1.09000 * 109.58476 * 6.62292 * 11 10 7 39 39 H 1.08999 * 109.49413 * 174.58023 * 12 11 10 40 40 H 1.08998 * 109.49740 * 294.68266 * 12 11 10 41 41 H 1.09006 * 109.45687 * 178.61135 * 13 12 11 42 42 H 1.08999 * 109.45911 * 58.65849 * 13 12 11 43 43 H 0.97001 * 119.99812 * 179.97438 * 19 18 16 44 44 H 1.08994 * 109.58925 * 113.80222 * 24 10 7 45 45 H 1.08997 * 109.59033 * 353.36877 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.4990 -0.8372 1.1849 6 6 4.1153 -1.8761 0.3561 7 16 4.4514 0.2061 2.0490 8 8 3.6245 1.3070 2.4003 9 8 5.6611 0.3453 1.3164 10 7 4.8479 -0.5521 3.4669 11 6 4.0584 -0.3229 4.6845 12 6 3.6111 -1.6769 5.2442 13 6 4.8371 -2.5699 5.4487 14 6 5.5273 -2.8075 4.1037 15 1 4.8260 -3.2734 3.4116 16 6 6.7156 -3.7132 4.3012 17 1 7.7062 -3.3680 4.0445 18 6 6.5380 -4.9824 4.8096 19 7 5.3323 -5.4007 5.1274 20 14 8.0109 -6.1048 5.0550 21 1 9.2467 -5.3999 4.6295 22 1 8.1193 -6.4727 6.4896 23 1 7.8375 -7.3343 4.2405 24 6 5.9964 -1.4662 3.5311 25 1 -0.3633 0.5140 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1262 1.4437 -0.0915 30 1 1.6040 1.9820 -0.8408 31 1 1.7534 1.9293 0.9321 32 1 1.5983 -1.7164 1.3000 33 1 1.7594 -0.1536 2.1366 34 1 4.2520 -2.7804 0.9492 35 1 3.4689 -2.0935 -0.4943 36 1 5.0835 -1.5275 -0.0032 37 1 4.6694 0.1945 5.4242 38 1 3.1829 0.2804 4.4442 39 1 3.1067 -1.5273 6.1988 40 1 2.9273 -2.1531 4.5415 41 1 4.5241 -3.5253 5.8701 42 1 5.5318 -2.0820 6.1323 43 1 5.2073 -6.2938 5.4847 44 1 6.7653 -1.0422 4.1767 45 1 6.3995 -1.6174 2.5298 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594802858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:43 Heat of formation + Delta-G solvation = -111.800445 kcal Electronic energy + Delta-G solvation = -25343.084580 eV Core-core repulsion = 21906.872488 eV Total energy + Delta-G solvation = -3436.212092 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.30587 -38.72023 -38.28515 -36.96135 -35.18936 -34.75117 -32.70105 -31.87523 -28.42116 -28.02742 -27.02155 -25.69758 -25.07521 -23.32740 -21.26087 -20.99549 -19.74211 -19.11352 -18.49107 -18.09023 -17.33423 -16.61936 -16.02219 -15.82921 -15.58978 -15.22378 -15.10247 -14.85638 -14.46457 -14.38360 -14.23414 -13.92033 -13.82312 -13.59207 -13.43595 -13.29444 -12.95858 -12.89120 -12.80326 -12.68279 -12.66332 -12.52919 -12.37326 -12.12504 -11.87436 -11.86746 -11.79381 -11.59677 -11.50151 -11.10199 -10.74794 -10.40667 -9.98365 -9.77335 -8.06173 -6.19841 -0.44262 1.41976 1.45785 1.55656 1.84381 2.43343 2.47125 3.21164 3.25866 3.70355 3.84175 3.97273 4.03849 4.24545 4.25731 4.32522 4.51949 4.57585 4.58226 4.61101 4.66587 4.78423 4.83870 4.86891 4.88550 4.91721 4.94944 4.96245 5.03967 5.09508 5.16661 5.23609 5.29683 5.33887 5.40221 5.49430 5.54017 5.63944 5.70086 5.79588 6.00617 6.17464 6.41515 6.90891 7.48135 8.97276 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021414 B = 0.004608 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.222081 B = 6074.374008 C = 6191.676370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C -0.150 4.150 4 C 0.120 3.880 5 N -1.004 6.004 6 C 0.083 3.917 7 S 2.790 3.210 8 O -0.987 6.987 9 O -1.012 7.012 10 N -1.006 6.006 11 C 0.123 3.877 12 C -0.123 4.123 13 C -0.105 4.105 14 C 0.043 3.957 15 H 0.007 0.993 16 C -0.535 4.535 17 H 0.053 0.947 18 C 0.021 3.979 19 N -0.911 5.911 20 Si 0.948 3.052 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.139 3.861 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.019 0.981 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.029 0.971 43 H 0.260 0.740 44 H 0.057 0.943 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.970 8.769 -7.346 15.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.132 4.132 3 C -0.208 4.208 4 C -0.005 4.005 5 N -0.845 5.845 6 C -0.062 4.062 7 S 2.801 3.199 8 O -0.971 6.971 9 O -0.996 6.996 10 N -0.846 5.846 11 C -0.002 4.002 12 C -0.162 4.162 13 C -0.143 4.143 14 C 0.023 3.977 15 H 0.025 0.975 16 C -0.574 4.574 17 H 0.071 0.929 18 C -0.178 4.178 19 N -0.550 5.550 20 Si 0.774 3.226 21 H -0.194 1.194 22 H -0.208 1.208 23 H -0.208 1.208 24 C 0.014 3.986 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.039 0.961 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.048 0.952 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.769 9.502 -7.549 15.579 hybrid contribution 0.980 -1.317 0.411 1.692 sum -8.789 8.185 -7.138 13.971 Atomic orbital electron populations 1.21747 0.92703 1.02730 1.02630 1.21528 0.97363 0.95812 0.98466 1.21928 0.98967 0.97072 1.02817 1.21626 0.77478 1.02250 0.99100 1.57644 1.16764 1.49500 1.60589 1.21631 0.98881 0.89999 0.95690 1.01550 0.72432 0.73566 0.72400 1.93541 1.69075 1.50360 1.84099 1.93529 1.47444 1.86416 1.72204 1.58038 1.40124 1.61294 1.25114 1.21539 0.95157 0.97447 0.86086 1.21877 0.98168 0.95277 1.00890 1.21399 0.95424 0.98942 0.98524 1.18878 0.94765 0.90319 0.93776 0.97511 1.21509 0.94125 0.99087 1.42655 0.92915 1.25585 0.97912 0.99164 0.95140 1.70001 1.22102 1.18542 1.44369 0.85661 0.80384 0.78931 0.77579 1.19404 1.20838 1.20764 1.21443 0.86282 0.90231 1.00678 0.92313 0.91459 0.91461 0.90195 0.96147 0.91041 0.92085 0.89064 0.89957 0.93113 0.88033 0.91344 0.90823 0.88404 0.90222 0.92790 0.91860 0.95221 0.93078 0.92422 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.19 71.98 0.66 -1.40 16 2 C -0.11 -2.17 3.06 -10.79 -0.03 -2.21 16 3 C -0.15 -3.46 7.80 71.98 0.56 -2.90 16 4 C 0.12 2.74 4.92 86.38 0.42 3.16 16 5 N -1.00 -28.29 2.91 -539.12 -1.57 -29.85 16 6 C 0.08 2.19 10.65 127.77 1.36 3.55 16 7 S 2.79 95.23 5.28 -56.49 -0.30 94.93 16 8 O -0.99 -33.84 13.21 -128.00 -1.69 -35.53 16 9 O -1.01 -40.49 15.76 -128.00 -2.02 -42.51 16 10 N -1.01 -35.82 3.35 -513.07 -1.72 -37.54 16 11 C 0.12 3.86 6.40 86.36 0.55 4.41 16 12 C -0.12 -4.22 6.08 30.67 0.19 -4.03 16 13 C -0.10 -4.62 4.96 30.62 0.15 -4.47 16 14 C 0.04 2.01 2.25 -11.46 -0.03 1.98 16 15 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 16 C -0.53 -28.20 8.56 25.60 0.22 -27.98 16 17 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 18 C 0.02 1.13 5.31 84.65 0.45 1.58 16 19 N -0.91 -50.00 11.31 21.45 0.24 -49.75 16 20 Si 0.95 42.26 29.54 68.60 2.03 44.29 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 C 0.14 5.72 5.58 86.36 0.48 6.21 16 25 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 1.46 7.62 -2.39 -0.02 1.44 16 29 H 0.02 0.53 6.97 -2.39 -0.02 0.52 16 30 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.06 1.52 7.45 -2.39 -0.02 1.50 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.79 16 33 H 0.08 1.90 7.23 -2.38 -0.02 1.89 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.10 1.99 7.56 -2.39 -0.02 1.97 16 36 H 0.07 1.93 7.09 -2.39 -0.02 1.91 16 37 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 38 H 0.10 2.67 6.99 -2.39 -0.02 2.65 16 39 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.06 3.20 6.04 -2.38 -0.01 3.18 16 42 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 44 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.07 2.74 7.27 -2.39 -0.02 2.72 16 Total: -1.00 -62.66 355.43 0.91 -61.75 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.94 Total: 16.30 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 4.99 Total: -22.10 kcal Atomic # 7 Polarization: -114.10 SS G_CDS: -3.04 Total: -117.14 kcal Atomic # 8 Polarization: -74.33 SS G_CDS: -3.71 Total: -78.04 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: 95.23 SS G_CDS: -0.30 Total: 94.93 kcal Total: -62.66 0.91 -61.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594802858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.050 kcal (2) G-P(sol) polarization free energy of solvation -62.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds