Wall clock time and date at job start Tue Mar 31 2020 09:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46976 * 2 1 4 4 C 1.52993 * 109.46948 * 180.02562 * 3 2 1 5 5 N 1.46509 * 109.47328 * 180.02562 * 4 3 2 6 6 C 1.46492 * 120.00238 * 275.00264 * 5 4 3 7 7 S 1.65606 * 119.99573 * 95.00105 * 5 4 3 8 8 O 1.42095 * 106.40344 * 336.46158 * 7 5 4 9 9 O 1.42101 * 106.39967 * 203.54404 * 7 5 4 10 10 N 1.65595 * 107.21816 * 90.00491 * 7 5 4 11 11 C 1.46929 * 120.63548 * 89.99596 * 10 7 5 12 12 C 1.53190 * 108.77597 * 126.36867 * 11 10 7 13 13 C 1.53037 * 109.31457 * 54.63667 * 12 11 10 14 14 C 1.53041 * 109.53906 * 298.63976 * 13 12 11 15 15 H 1.09007 * 109.49631 * 301.37454 * 14 13 12 16 16 C 1.50700 * 109.49805 * 181.31537 * 14 13 12 17 17 H 1.07999 * 119.99988 * 239.99408 * 16 14 13 18 18 C 1.37885 * 120.00047 * 59.99587 * 16 14 13 19 19 N 1.31518 * 119.99792 * 359.72305 * 18 16 14 20 20 Si 1.86795 * 120.00009 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47088 * 89.99795 * 20 18 16 22 22 H 1.48495 * 109.47293 * 209.99997 * 20 18 16 23 23 H 1.48507 * 109.47015 * 329.99955 * 20 18 16 24 24 C 1.46935 * 120.63029 * 269.97614 * 10 7 5 25 25 H 1.08996 * 109.47439 * 59.99613 * 1 2 3 26 26 H 1.08995 * 109.47098 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46954 * 299.99939 * 1 2 3 28 28 H 1.08999 * 109.47007 * 240.00566 * 2 1 3 29 29 H 1.08999 * 109.46958 * 120.00205 * 2 1 3 30 30 H 1.09004 * 109.47229 * 60.00229 * 3 2 1 31 31 H 1.08996 * 109.47352 * 300.00440 * 3 2 1 32 32 H 1.08999 * 109.47073 * 60.00542 * 4 3 2 33 33 H 1.09004 * 109.47597 * 300.00083 * 4 3 2 34 34 H 1.09000 * 109.47405 * 270.00158 * 6 5 4 35 35 H 1.08999 * 109.47293 * 29.99721 * 6 5 4 36 36 H 1.08995 * 109.47265 * 149.99783 * 6 5 4 37 37 H 1.09002 * 109.57887 * 6.58317 * 11 10 7 38 38 H 1.08994 * 109.70217 * 246.22882 * 11 10 7 39 39 H 1.09002 * 109.49607 * 294.68773 * 12 11 10 40 40 H 1.08997 * 109.49960 * 174.59450 * 12 11 10 41 41 H 1.08994 * 109.45930 * 178.61551 * 13 12 11 42 42 H 1.09004 * 109.46003 * 58.65530 * 13 12 11 43 43 H 0.97000 * 119.99468 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.58689 * 113.84124 * 24 10 7 45 45 H 1.08997 * 109.58439 * 353.41587 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8238 0.0000 6 6 4.1977 3.5520 -1.2634 7 16 4.4529 3.5618 1.4290 8 8 3.7280 2.8825 2.4450 9 8 4.3462 4.9604 1.2011 10 7 6.0552 3.2551 1.7131 11 6 7.0923 4.1675 1.2124 12 6 7.9891 4.5842 2.3824 13 6 8.5338 3.3322 3.0736 14 6 7.3706 2.5060 3.6270 15 1 6.7961 3.1109 4.3286 16 6 7.9096 1.2900 4.3355 17 1 7.6337 0.3019 3.9980 18 6 8.7549 1.4390 5.4145 19 7 9.0952 2.6422 5.8221 20 14 9.4236 -0.0683 6.2922 21 1 10.7037 -0.4806 5.6625 22 1 9.6571 0.2548 7.7227 23 1 8.4414 -1.1774 6.1892 24 6 6.4668 2.0656 2.4712 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 3.9329 0.9289 -0.8909 33 1 3.9338 0.9285 0.8891 34 1 5.1974 3.3914 -1.6671 35 1 3.4561 3.1898 -1.9754 36 1 4.0434 4.6166 -1.0881 37 1 6.6234 5.0507 0.7787 38 1 7.6913 3.6624 0.4547 39 1 7.4084 5.1698 3.0952 40 1 8.8191 5.1840 2.0089 41 1 9.1919 3.6261 3.8912 42 1 9.0936 2.7347 2.3540 43 1 9.6896 2.7470 6.5814 44 1 7.0144 1.3870 1.8172 45 1 5.5853 1.5622 2.8680 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594808380.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:50 Heat of formation + Delta-G solvation = -96.871766 kcal Electronic energy + Delta-G solvation = -24651.888664 eV Core-core repulsion = 21216.323928 eV Total energy + Delta-G solvation = -3435.564736 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -37.67408 -37.26201 -36.93436 -35.49669 -34.26674 -33.28960 -31.07359 -30.08058 -29.36030 -26.11832 -25.10242 -23.63341 -23.07774 -21.66669 -21.20869 -19.49068 -18.52322 -17.33829 -17.23631 -16.18041 -16.10059 -15.38514 -14.80984 -14.69243 -14.48210 -13.83760 -13.54084 -13.52319 -13.35222 -13.11743 -12.79017 -12.67864 -12.59236 -12.51659 -12.15959 -11.89941 -11.74333 -11.66124 -11.41389 -11.32302 -11.22693 -11.02855 -10.96720 -10.84152 -10.70892 -10.60875 -10.20513 -9.92712 -9.79372 -9.41027 -9.05406 -8.82405 -8.43085 -8.15497 -5.99849 -4.07485 0.85918 3.14367 3.30017 3.37251 3.40265 3.75007 4.42310 4.54956 4.69841 4.80201 4.91183 5.02805 5.21621 5.25894 5.30840 5.36850 5.46237 5.55662 5.57937 5.66066 5.69865 5.70933 5.78739 5.82266 5.93805 6.00816 6.03630 6.20186 6.22845 6.26200 6.34554 6.48917 6.52801 6.64728 6.66190 6.92979 7.07326 7.25015 7.45991 7.71732 7.97087 8.11001 8.40276 8.95807 9.57156 11.05503 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.016165 B = 0.004586 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.677919 B = 6103.843720 C = 7321.251121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.141 4.141 4 C 0.125 3.875 5 N -1.015 6.015 6 C 0.087 3.913 7 S 2.778 3.222 8 O -0.971 6.971 9 O -0.986 6.986 10 N -0.999 5.999 11 C 0.125 3.875 12 C -0.131 4.131 13 C -0.109 4.109 14 C 0.041 3.959 15 H 0.031 0.969 16 C -0.515 4.515 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.126 3.874 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.095 0.905 42 H 0.034 0.966 43 H 0.260 0.740 44 H 0.055 0.945 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.830 -0.954 -15.379 18.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.180 4.180 4 C 0.000 4.000 5 N -0.853 5.853 6 C -0.058 4.058 7 S 2.788 3.212 8 O -0.955 6.955 9 O -0.970 6.970 10 N -0.841 5.841 11 C -0.001 4.001 12 C -0.171 4.171 13 C -0.147 4.147 14 C 0.021 3.979 15 H 0.049 0.951 16 C -0.554 4.554 17 H 0.075 0.925 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.721 3.279 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.199 1.199 24 C 0.002 3.998 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.113 0.887 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.327 -0.353 -14.728 17.991 hybrid contribution 0.722 -0.994 0.206 1.246 sum -9.605 -1.347 -14.522 17.463 Atomic orbital electron populations 1.21763 0.95845 1.01495 1.01823 1.21460 0.95974 0.96381 1.02303 1.22070 0.95734 0.97416 1.02805 1.21275 0.93941 0.81524 1.03285 1.58064 1.80315 1.23660 1.23270 1.21487 1.01550 0.97092 0.85716 1.02090 0.73216 0.73091 0.72800 1.93597 1.70795 1.75732 1.55372 1.93540 1.86555 1.30875 1.86017 1.57986 1.23355 1.35413 1.67361 1.21374 0.90050 0.91794 0.96842 1.21951 0.98049 1.00072 0.96991 1.21583 1.00282 0.93479 0.99386 1.18941 0.92118 0.95737 0.91095 0.95104 1.21087 1.28424 0.92314 1.13564 0.92478 1.24947 0.96247 0.95802 0.96853 1.69879 1.35451 1.21026 1.26277 0.86584 0.79238 0.83204 0.78883 1.20754 1.21268 1.19881 1.21802 0.99782 0.84291 0.93947 0.92966 0.92791 0.92570 0.92001 0.91415 0.91090 0.91815 0.90664 0.89906 0.92940 0.91152 0.90285 0.90666 0.92334 0.92354 0.92594 0.88700 0.94671 0.92964 0.92688 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.12 -1.13 5.93 -26.73 -0.16 -1.29 16 3 C -0.14 -1.52 5.54 -26.74 -0.15 -1.66 16 4 C 0.13 1.44 5.33 -4.04 -0.02 1.42 16 5 N -1.01 -13.21 3.24 -121.76 -0.39 -13.61 16 6 C 0.09 0.89 10.68 59.84 0.64 1.53 16 7 S 2.78 48.34 6.10 -107.50 -0.66 47.69 16 8 O -0.97 -19.64 15.70 -57.17 -0.90 -20.53 16 9 O -0.99 -18.75 15.33 -57.17 -0.88 -19.63 16 10 N -1.00 -18.12 3.35 -113.52 -0.38 -18.50 16 11 C 0.13 2.08 6.48 -3.71 -0.02 2.06 16 12 C -0.13 -2.50 6.08 -26.61 -0.16 -2.66 16 13 C -0.11 -2.49 4.96 -26.69 -0.13 -2.62 16 14 C 0.04 1.01 2.25 -91.65 -0.21 0.81 16 15 H 0.03 0.85 8.14 -51.92 -0.42 0.43 16 16 C -0.51 -13.78 8.56 -34.44 -0.29 -14.08 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 19 N -0.89 -25.02 11.30 55.43 0.63 -24.39 16 20 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 C 0.13 2.57 5.70 -3.71 -0.02 2.55 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 33 H 0.08 1.04 7.61 -51.93 -0.40 0.65 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.55 8.07 -51.93 -0.42 0.14 16 36 H 0.08 0.85 7.02 -51.93 -0.36 0.49 16 37 H 0.08 1.15 6.92 -51.93 -0.36 0.79 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.09 2.45 6.03 -51.93 -0.31 2.13 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.08 1.58 6.91 -51.93 -0.36 1.22 16 LS Contribution 363.31 15.07 5.48 5.48 Total: -1.00 -31.15 363.31 -10.47 -41.62 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -8.09 Total: -0.81 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -0.26 Total: -13.25 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.15 Total: -56.50 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -1.77 Total: -40.16 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 48.34 SS G_CDS: -0.66 Total: 47.69 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.15 -10.47 -41.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594808380.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.248 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds