Wall clock time and date at job start Tue Mar 31 2020 09:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46976 * 2 1 4 4 C 1.52993 * 109.46948 * 180.02562 * 3 2 1 5 5 N 1.46509 * 109.47328 * 180.02562 * 4 3 2 6 6 C 1.46492 * 120.00238 * 275.00264 * 5 4 3 7 7 S 1.65606 * 119.99573 * 95.00105 * 5 4 3 8 8 O 1.42095 * 106.40344 * 336.46158 * 7 5 4 9 9 O 1.42101 * 106.39967 * 203.54404 * 7 5 4 10 10 N 1.65595 * 107.21816 * 90.00491 * 7 5 4 11 11 C 1.46929 * 120.63548 * 89.99596 * 10 7 5 12 12 C 1.53190 * 108.77597 * 126.36867 * 11 10 7 13 13 C 1.53037 * 109.31457 * 54.63667 * 12 11 10 14 14 C 1.53041 * 109.53906 * 298.63976 * 13 12 11 15 15 H 1.09007 * 109.49631 * 301.37454 * 14 13 12 16 16 C 1.50700 * 109.49805 * 181.31537 * 14 13 12 17 17 H 1.07999 * 119.99988 * 239.99408 * 16 14 13 18 18 C 1.37885 * 120.00047 * 59.99587 * 16 14 13 19 19 N 1.31518 * 119.99792 * 359.72305 * 18 16 14 20 20 Si 1.86795 * 120.00009 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47088 * 89.99795 * 20 18 16 22 22 H 1.48495 * 109.47293 * 209.99997 * 20 18 16 23 23 H 1.48507 * 109.47015 * 329.99955 * 20 18 16 24 24 C 1.46935 * 120.63029 * 269.97614 * 10 7 5 25 25 H 1.08996 * 109.47439 * 59.99613 * 1 2 3 26 26 H 1.08995 * 109.47098 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46954 * 299.99939 * 1 2 3 28 28 H 1.08999 * 109.47007 * 240.00566 * 2 1 3 29 29 H 1.08999 * 109.46958 * 120.00205 * 2 1 3 30 30 H 1.09004 * 109.47229 * 60.00229 * 3 2 1 31 31 H 1.08996 * 109.47352 * 300.00440 * 3 2 1 32 32 H 1.08999 * 109.47073 * 60.00542 * 4 3 2 33 33 H 1.09004 * 109.47597 * 300.00083 * 4 3 2 34 34 H 1.09000 * 109.47405 * 270.00158 * 6 5 4 35 35 H 1.08999 * 109.47293 * 29.99721 * 6 5 4 36 36 H 1.08995 * 109.47265 * 149.99783 * 6 5 4 37 37 H 1.09002 * 109.57887 * 6.58317 * 11 10 7 38 38 H 1.08994 * 109.70217 * 246.22882 * 11 10 7 39 39 H 1.09002 * 109.49607 * 294.68773 * 12 11 10 40 40 H 1.08997 * 109.49960 * 174.59450 * 12 11 10 41 41 H 1.08994 * 109.45930 * 178.61551 * 13 12 11 42 42 H 1.09004 * 109.46003 * 58.65530 * 13 12 11 43 43 H 0.97000 * 119.99468 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.58689 * 113.84124 * 24 10 7 45 45 H 1.08997 * 109.58439 * 353.41587 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8238 0.0000 6 6 4.1977 3.5520 -1.2634 7 16 4.4529 3.5618 1.4290 8 8 3.7280 2.8825 2.4450 9 8 4.3462 4.9604 1.2011 10 7 6.0552 3.2551 1.7131 11 6 7.0923 4.1675 1.2124 12 6 7.9891 4.5842 2.3824 13 6 8.5338 3.3322 3.0736 14 6 7.3706 2.5060 3.6270 15 1 6.7961 3.1109 4.3286 16 6 7.9096 1.2900 4.3355 17 1 7.6337 0.3019 3.9980 18 6 8.7549 1.4390 5.4145 19 7 9.0952 2.6422 5.8221 20 14 9.4236 -0.0683 6.2922 21 1 10.7037 -0.4806 5.6625 22 1 9.6571 0.2548 7.7227 23 1 8.4414 -1.1774 6.1892 24 6 6.4668 2.0656 2.4712 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 3.9329 0.9289 -0.8909 33 1 3.9338 0.9285 0.8891 34 1 5.1974 3.3914 -1.6671 35 1 3.4561 3.1898 -1.9754 36 1 4.0434 4.6166 -1.0881 37 1 6.6234 5.0507 0.7787 38 1 7.6913 3.6624 0.4547 39 1 7.4084 5.1698 3.0952 40 1 8.8191 5.1840 2.0089 41 1 9.1919 3.6261 3.8912 42 1 9.0936 2.7347 2.3540 43 1 9.6896 2.7470 6.5814 44 1 7.0144 1.3870 1.8172 45 1 5.5853 1.5622 2.8680 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594808380.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:49 Heat of formation + Delta-G solvation = -116.800720 kcal Electronic energy + Delta-G solvation = -24652.752848 eV Core-core repulsion = 21216.323928 eV Total energy + Delta-G solvation = -3436.428920 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.29481 -38.53118 -38.04601 -36.96912 -35.20091 -35.08150 -32.72424 -31.87417 -30.16090 -27.06767 -26.94391 -25.17961 -24.00943 -23.36151 -21.99438 -21.16874 -19.83113 -18.85895 -18.55358 -18.07036 -17.34534 -16.61688 -16.26189 -15.87432 -15.54743 -15.24101 -15.13331 -14.91976 -14.45102 -14.39503 -14.21616 -14.08682 -13.83708 -13.59045 -13.42331 -13.29589 -13.11516 -12.92339 -12.78390 -12.70745 -12.65577 -12.52790 -12.23097 -12.03661 -11.87206 -11.84208 -11.79994 -11.58810 -11.40687 -11.09958 -10.77932 -10.41402 -10.05894 -9.75243 -8.06447 -6.21973 -0.49010 1.43555 1.44916 1.54807 1.89466 2.41796 2.47591 3.20259 3.23877 3.74021 3.85666 3.98587 4.11831 4.25430 4.28977 4.31809 4.44837 4.55773 4.60538 4.63139 4.68100 4.74480 4.81988 4.82757 4.84991 4.92513 4.96135 4.99393 5.04854 5.08264 5.16095 5.26964 5.29052 5.33374 5.42222 5.47284 5.51291 5.62676 5.68048 5.80068 5.98217 6.17630 6.38116 6.89965 7.46271 8.97489 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.016165 B = 0.004586 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.677919 B = 6103.843720 C = 7321.251121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.140 4.140 4 C 0.119 3.881 5 N -1.004 6.004 6 C 0.078 3.922 7 S 2.789 3.211 8 O -1.008 7.008 9 O -1.005 7.005 10 N -1.005 6.005 11 C 0.124 3.876 12 C -0.129 4.129 13 C -0.102 4.102 14 C 0.034 3.966 15 H -0.017 1.017 16 C -0.533 4.533 17 H 0.061 0.939 18 C 0.012 3.988 19 N -0.917 5.917 20 Si 0.957 3.043 21 H -0.272 1.272 22 H -0.288 1.288 23 H -0.267 1.267 24 C 0.140 3.860 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.042 0.958 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.034 0.966 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.042 0.958 43 H 0.260 0.740 44 H 0.075 0.925 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.844 -2.132 -18.341 20.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.179 4.179 4 C -0.006 4.006 5 N -0.846 5.846 6 C -0.066 4.066 7 S 2.799 3.201 8 O -0.992 6.992 9 O -0.989 6.989 10 N -0.846 5.846 11 C 0.000 4.000 12 C -0.168 4.168 13 C -0.140 4.140 14 C 0.014 3.986 15 H 0.001 0.999 16 C -0.572 4.572 17 H 0.079 0.921 18 C -0.186 4.186 19 N -0.557 5.557 20 Si 0.782 3.218 21 H -0.197 1.197 22 H -0.214 1.214 23 H -0.192 1.192 24 C 0.015 3.985 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.128 0.872 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.053 0.947 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.093 0.907 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.339 -1.521 -17.698 20.553 hybrid contribution 0.671 -0.599 1.093 1.416 sum -9.668 -2.120 -16.605 19.331 Atomic orbital electron populations 1.21774 0.95364 1.02144 1.01732 1.21467 0.96426 0.95355 1.02768 1.22067 0.95274 0.98374 1.02221 1.21506 0.94388 0.80539 1.04160 1.57711 1.79706 1.24395 1.22784 1.21789 1.03833 0.96429 0.84550 1.01537 0.72755 0.72555 0.73257 1.93545 1.71603 1.76278 1.57779 1.93506 1.86671 1.32236 1.86470 1.57952 1.24024 1.34950 1.67632 1.21528 0.89724 0.92617 0.96167 1.21901 0.99234 0.98300 0.97386 1.21377 0.99039 0.94982 0.98602 1.18927 0.93024 0.94829 0.91857 0.99874 1.21496 1.28356 0.93228 1.14112 0.92064 1.25757 0.96661 0.98497 0.97728 1.70043 1.36026 1.22982 1.26640 0.85576 0.78872 0.79865 0.77448 1.19732 1.21436 1.19187 1.21444 0.98699 0.85244 0.93094 0.91921 0.91798 0.93835 0.89880 0.92589 0.94014 0.90046 0.87182 0.91566 0.90942 0.88173 0.91131 0.88852 0.89178 0.94700 0.89715 0.92227 0.93888 0.93121 0.90695 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 71.98 0.71 -1.62 16 2 C -0.12 -2.02 5.93 30.60 0.18 -1.84 16 3 C -0.14 -2.78 5.54 30.59 0.17 -2.61 16 4 C 0.12 2.46 5.33 86.38 0.46 2.92 16 5 N -1.00 -23.91 3.24 -539.14 -1.75 -25.66 16 6 C 0.08 1.31 10.68 127.77 1.36 2.67 16 7 S 2.79 95.87 6.10 -56.49 -0.34 95.52 16 8 O -1.01 -41.92 15.70 -128.00 -2.01 -43.92 16 9 O -1.00 -37.64 15.33 -128.00 -1.96 -39.61 16 10 N -1.01 -35.64 3.35 -513.07 -1.72 -37.35 16 11 C 0.12 3.88 6.48 86.36 0.56 4.44 16 12 C -0.13 -4.85 6.08 30.67 0.19 -4.66 16 13 C -0.10 -4.71 4.96 30.62 0.15 -4.56 16 14 C 0.03 1.71 2.25 -11.46 -0.03 1.68 16 15 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 16 C -0.53 -29.09 8.56 25.60 0.22 -28.87 16 17 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 18 C 0.01 0.68 5.30 84.66 0.45 1.13 16 19 N -0.92 -53.44 11.30 21.45 0.24 -53.19 16 20 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 24 C 0.14 5.73 5.70 86.36 0.49 6.22 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.11 1.55 8.11 -2.39 -0.02 1.53 16 33 H 0.07 1.61 7.61 -2.38 -0.02 1.59 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.10 1.12 8.07 -2.39 -0.02 1.10 16 36 H 0.07 1.33 7.02 -2.39 -0.02 1.31 16 37 H 0.09 2.61 6.92 -2.39 -0.02 2.60 16 38 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.06 3.18 6.03 -2.39 -0.01 3.16 16 42 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 44 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 45 H 0.07 2.83 6.91 -2.39 -0.02 2.82 16 Total: -1.00 -70.21 363.31 0.34 -69.87 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.93 Total: 14.03 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 4.92 Total: -25.08 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -3.22 Total: -116.21 kcal Atomic # 8 Polarization: -79.56 SS G_CDS: -3.97 Total: -83.53 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 95.87 SS G_CDS: -0.34 Total: 95.52 kcal Total: -70.21 0.34 -69.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594808380.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.932 kcal (2) G-P(sol) polarization free energy of solvation -70.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds