Wall clock time and date at job start Tue Mar 31 2020 09:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46897 * 2 1 4 4 C 1.50698 * 109.47366 * 120.00591 * 2 1 3 5 5 O 1.21285 * 119.99651 * 240.00372 * 4 2 1 6 6 N 1.34775 * 120.00128 * 59.99493 * 4 2 1 7 7 C 1.46500 * 119.99983 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.46923 * 180.02562 * 7 6 4 9 9 N 1.46500 * 109.46923 * 180.02562 * 8 7 6 10 10 C 1.34775 * 119.99983 * 179.97438 * 9 8 7 11 11 O 1.21607 * 119.99826 * 0.02562 * 10 9 8 12 12 C 1.47437 * 120.00283 * 180.02562 * 10 9 8 13 13 C 1.39227 * 120.27694 * 355.71167 * 12 10 9 14 14 C 1.38223 * 120.09019 * 180.27968 * 13 12 10 15 15 C 1.38827 * 120.67436 * 359.69359 * 14 13 12 16 16 C 1.37596 * 120.57166 * 0.02562 * 15 14 13 17 17 C 1.40714 * 119.88143 * 0.02562 * 16 15 14 18 18 C 1.40885 * 120.33020 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00278 * 216.32858 * 18 17 16 20 20 C 1.40279 * 119.99934 * 36.32229 * 18 17 16 21 21 N 1.30628 * 120.00021 * 190.51200 * 20 18 17 22 22 Si 1.86805 * 119.99864 * 10.51087 * 20 18 17 23 23 H 1.48495 * 109.47237 * 267.22291 * 22 20 18 24 24 H 1.48498 * 109.47138 * 27.22377 * 22 20 18 25 25 H 1.48504 * 109.46514 * 147.22203 * 22 20 18 26 26 H 1.09000 * 109.46872 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47169 * 299.99791 * 1 2 3 28 28 H 1.09000 * 109.47346 * 59.99424 * 1 2 3 29 29 H 1.09003 * 109.47136 * 240.00755 * 2 1 3 30 30 H 1.09001 * 109.46707 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47593 * 300.00425 * 3 2 1 32 32 H 1.09003 * 109.46611 * 60.00433 * 3 2 1 33 33 H 0.97001 * 119.99734 * 0.02562 * 6 4 2 34 34 H 1.09001 * 109.46722 * 60.00492 * 7 6 4 35 35 H 1.09001 * 109.47263 * 300.00608 * 7 6 4 36 36 H 1.09001 * 109.47351 * 60.00471 * 8 7 6 37 37 H 1.09001 * 109.47316 * 300.00170 * 8 7 6 38 38 H 0.97001 * 120.00283 * 0.02562 * 9 8 7 39 39 H 1.08002 * 119.96175 * 359.97438 * 13 12 10 40 40 H 1.08002 * 119.66391 * 179.71666 * 14 13 12 41 41 H 1.08000 * 119.71712 * 180.02562 * 15 14 13 42 42 H 1.07999 * 120.06224 * 180.02562 * 16 15 14 43 43 H 0.96995 * 120.00424 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7297 -0.1211 2.0287 6 7 1.7068 -2.0008 1.4436 7 6 2.1957 -2.6917 2.6394 8 6 1.6860 -4.1343 2.6391 9 7 2.1744 -4.8250 3.8352 10 6 1.8487 -6.1153 4.0485 11 8 1.1498 -6.7063 3.2478 12 6 2.3396 -6.8103 5.2525 13 6 3.2120 -6.1680 6.1271 14 6 3.6744 -6.8252 7.2517 15 6 3.2733 -8.1254 7.5273 16 6 2.4075 -8.7841 6.6848 17 6 1.9229 -8.1379 5.5326 18 6 1.0365 -8.8037 4.6632 19 1 1.1037 -8.6439 3.5972 20 6 0.0666 -9.6743 5.1820 21 7 -0.6161 -10.4452 4.3783 22 14 -0.2485 -9.7312 7.0224 23 1 0.5895 -10.7927 7.6356 24 1 0.0967 -8.4184 7.6246 25 1 -1.6825 -10.0276 7.2700 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8934 -0.5137 -0.8901 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.1493 -2.4723 0.8049 34 1 1.8327 -2.1780 3.5296 35 1 3.2857 -2.6917 2.6389 36 1 2.0492 -4.6478 1.7488 37 1 0.5960 -4.1346 2.6393 38 1 2.7315 -4.3535 4.4740 39 1 3.5317 -5.1566 5.9240 40 1 4.3545 -6.3220 7.9230 41 1 3.6439 -8.6241 8.4106 42 1 2.1005 -9.7953 6.9074 43 1 -1.2869 -11.0469 4.7370 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600945657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:44 Heat of formation + Delta-G solvation = -65.817543 kcal Electronic energy + Delta-G solvation = -23916.752762 eV Core-core repulsion = 20347.090687 eV Total energy + Delta-G solvation = -3569.662075 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.12110 -39.10709 -37.17051 -35.70567 -34.76265 -33.91474 -33.34294 -30.52906 -30.45192 -28.57924 -27.36809 -25.44340 -24.10946 -22.57674 -22.10680 -21.02045 -20.08072 -19.55960 -17.70809 -17.39159 -16.78212 -16.08266 -15.96034 -15.32800 -15.17346 -15.01667 -14.23355 -14.12324 -14.09963 -14.01075 -13.51475 -13.40714 -12.98585 -12.67271 -12.63463 -12.46855 -12.25121 -12.09239 -11.78081 -11.74112 -11.48914 -11.44438 -11.38129 -10.96400 -10.73410 -10.47173 -10.22201 -9.97466 -9.83529 -9.29679 -9.28383 -8.56514 -8.52810 -7.85045 -7.62439 -6.93442 -4.51916 2.06574 2.44047 2.57742 2.82639 3.06567 3.15226 3.26651 3.90226 3.96323 3.97216 4.38166 4.53456 4.56138 4.61861 4.72606 5.04247 5.06574 5.26406 5.36187 5.37668 5.39731 5.50626 5.60113 5.74067 5.79397 5.80703 5.90477 5.93281 5.95949 6.04998 6.19422 6.36125 6.48032 6.76376 6.96243 7.06569 7.19461 7.25572 7.36381 7.56085 7.71981 7.98470 8.00695 8.22235 8.44205 8.60411 8.82789 9.27764 10.03263 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.022144 B = 0.002825 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.150921 B = 9908.117274 C =10830.305395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C -0.133 4.133 4 C 0.516 3.484 5 O -0.540 6.540 6 N -0.726 5.726 7 C 0.108 3.892 8 C 0.116 3.884 9 N -0.746 5.746 10 C 0.563 3.437 11 O -0.527 6.527 12 C -0.250 4.250 13 C -0.041 4.041 14 C -0.254 4.254 15 C -0.065 4.065 16 C -0.225 4.225 17 C 0.116 3.884 18 C -0.401 4.401 19 H 0.124 0.876 20 C 0.079 3.921 21 N -0.793 5.793 22 Si 0.907 3.093 23 H -0.268 1.268 24 H -0.242 1.242 25 H -0.289 1.289 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.403 0.597 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.394 0.606 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.949 15.609 -5.617 16.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 C -0.190 4.190 4 C 0.302 3.698 5 O -0.417 6.417 6 N -0.379 5.379 7 C -0.016 4.016 8 C -0.009 4.009 9 N -0.403 5.403 10 C 0.357 3.643 11 O -0.404 6.404 12 C -0.255 4.255 13 C -0.060 4.060 14 C -0.273 4.273 15 C -0.084 4.084 16 C -0.244 4.244 17 C 0.112 3.888 18 C -0.428 4.428 19 H 0.141 0.859 20 C -0.142 4.142 21 N -0.416 5.416 22 Si 0.733 3.267 23 H -0.194 1.194 24 H -0.165 1.165 25 H -0.216 1.216 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.238 0.762 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.228 0.772 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.122 0.878 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.722 15.388 -5.741 16.514 hybrid contribution -0.194 -0.228 0.835 0.887 sum 1.528 15.160 -4.906 16.008 Atomic orbital electron populations 1.21809 0.92760 1.02724 1.03039 1.21315 0.97701 0.98097 0.96528 1.21615 1.01806 0.93500 1.02120 1.20723 0.79911 0.81407 0.87724 1.90708 1.37810 1.66030 1.47143 1.45867 1.54077 1.12314 1.25599 1.21483 0.99869 0.91995 0.88264 1.21188 0.99631 0.90108 0.90005 1.45818 1.56388 1.13166 1.24898 1.18349 0.79733 0.79864 0.86403 1.90731 1.37710 1.65165 1.46803 1.19352 1.11109 0.95736 0.99316 1.20789 0.94637 0.96877 0.93671 1.20300 1.09263 0.96748 1.00996 1.20752 0.96104 0.94489 0.97029 1.21156 1.04076 0.99628 0.99520 1.17552 0.91227 0.89429 0.90620 1.20192 1.09508 1.14698 0.98396 0.85856 1.26390 0.95179 0.91880 1.00743 1.69564 1.17773 1.15799 1.38457 0.86391 0.76715 0.81294 0.82334 1.19389 1.16526 1.21589 0.91943 0.91967 0.91305 0.88400 0.91951 0.92021 0.91915 0.76196 0.90858 0.90870 0.91454 0.91425 0.77150 0.88626 0.88469 0.88528 0.87751 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.09 37.16 0.34 -0.53 16 2 C -0.12 -0.85 3.26 -91.77 -0.30 -1.15 16 3 C -0.13 -1.01 8.48 37.16 0.32 -0.70 16 4 C 0.52 5.61 7.15 -10.99 -0.08 5.53 16 5 O -0.54 -8.04 15.98 5.55 0.09 -7.95 16 6 N -0.73 -6.99 5.45 -60.29 -0.33 -7.32 16 7 C 0.11 1.21 5.79 -4.04 -0.02 1.19 16 8 C 0.12 1.56 5.79 -4.04 -0.02 1.53 16 9 N -0.75 -12.24 5.51 -61.38 -0.34 -12.58 16 10 C 0.56 12.41 7.72 -12.51 -0.10 12.32 16 11 O -0.53 -13.58 13.54 5.27 0.07 -13.50 16 12 C -0.25 -5.76 5.92 -104.37 -0.62 -6.38 16 13 C -0.04 -0.80 9.52 -39.22 -0.37 -1.17 16 14 C -0.25 -4.93 10.03 -39.37 -0.39 -5.32 16 15 C -0.07 -1.34 10.01 -39.60 -0.40 -1.74 16 16 C -0.22 -5.26 7.00 -38.88 -0.27 -5.53 16 17 C 0.12 2.96 5.03 -106.54 -0.54 2.43 16 18 C -0.40 -11.12 8.31 -37.81 -0.31 -11.43 16 19 H 0.12 3.77 5.96 -52.49 -0.31 3.46 16 20 C 0.08 2.08 5.47 -17.30 -0.09 1.98 16 21 N -0.79 -21.32 13.92 55.56 0.77 -20.55 16 22 Si 0.91 20.54 24.52 -169.99 -4.17 16.37 16 23 H -0.27 -5.78 6.76 56.52 0.38 -5.40 16 24 H -0.24 -5.62 6.73 56.52 0.38 -5.24 16 25 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 26 H 0.06 0.33 7.57 -51.93 -0.39 -0.06 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.55 8.10 -51.93 -0.42 0.12 16 33 H 0.40 2.94 7.89 -40.82 -0.32 2.62 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.39 5.50 6.52 -40.82 -0.27 5.24 16 39 H 0.10 1.51 6.42 -52.49 -0.34 1.17 16 40 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.10 2.41 5.01 -52.49 -0.26 2.14 16 43 H 0.29 6.93 8.29 -40.82 -0.34 6.59 16 LS Contribution 353.20 15.07 5.32 5.32 Total: -1.00 -32.44 353.20 -7.58 -40.02 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.14 Total: 9.16 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -2.87 Total: -8.98 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.11 Total: -40.44 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: 0.16 Total: -21.45 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.17 Total: 16.37 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.44 -7.58 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600945657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.798 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds