Wall clock time and date at job start Tue Mar 31 2020 09:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46897 * 2 1 4 4 C 1.50698 * 109.47366 * 120.00591 * 2 1 3 5 5 O 1.21285 * 119.99651 * 240.00372 * 4 2 1 6 6 N 1.34775 * 120.00128 * 59.99493 * 4 2 1 7 7 C 1.46500 * 119.99983 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.46923 * 180.02562 * 7 6 4 9 9 N 1.46500 * 109.46923 * 180.02562 * 8 7 6 10 10 C 1.34775 * 119.99983 * 179.97438 * 9 8 7 11 11 O 1.21607 * 119.99826 * 0.02562 * 10 9 8 12 12 C 1.47437 * 120.00283 * 180.02562 * 10 9 8 13 13 C 1.39227 * 120.27694 * 355.71167 * 12 10 9 14 14 C 1.38223 * 120.09019 * 180.27968 * 13 12 10 15 15 C 1.38827 * 120.67436 * 359.69359 * 14 13 12 16 16 C 1.37596 * 120.57166 * 0.02562 * 15 14 13 17 17 C 1.40714 * 119.88143 * 0.02562 * 16 15 14 18 18 C 1.40885 * 120.33020 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00278 * 216.32858 * 18 17 16 20 20 C 1.40279 * 119.99934 * 36.32229 * 18 17 16 21 21 N 1.30628 * 120.00021 * 190.51200 * 20 18 17 22 22 Si 1.86805 * 119.99864 * 10.51087 * 20 18 17 23 23 H 1.48495 * 109.47237 * 267.22291 * 22 20 18 24 24 H 1.48498 * 109.47138 * 27.22377 * 22 20 18 25 25 H 1.48504 * 109.46514 * 147.22203 * 22 20 18 26 26 H 1.09000 * 109.46872 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47169 * 299.99791 * 1 2 3 28 28 H 1.09000 * 109.47346 * 59.99424 * 1 2 3 29 29 H 1.09003 * 109.47136 * 240.00755 * 2 1 3 30 30 H 1.09001 * 109.46707 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47593 * 300.00425 * 3 2 1 32 32 H 1.09003 * 109.46611 * 60.00433 * 3 2 1 33 33 H 0.97001 * 119.99734 * 0.02562 * 6 4 2 34 34 H 1.09001 * 109.46722 * 60.00492 * 7 6 4 35 35 H 1.09001 * 109.47263 * 300.00608 * 7 6 4 36 36 H 1.09001 * 109.47351 * 60.00471 * 8 7 6 37 37 H 1.09001 * 109.47316 * 300.00170 * 8 7 6 38 38 H 0.97001 * 120.00283 * 0.02562 * 9 8 7 39 39 H 1.08002 * 119.96175 * 359.97438 * 13 12 10 40 40 H 1.08002 * 119.66391 * 179.71666 * 14 13 12 41 41 H 1.08000 * 119.71712 * 180.02562 * 15 14 13 42 42 H 1.07999 * 120.06224 * 180.02562 * 16 15 14 43 43 H 0.96995 * 120.00424 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7297 -0.1211 2.0287 6 7 1.7068 -2.0008 1.4436 7 6 2.1957 -2.6917 2.6394 8 6 1.6860 -4.1343 2.6391 9 7 2.1744 -4.8250 3.8352 10 6 1.8487 -6.1153 4.0485 11 8 1.1498 -6.7063 3.2478 12 6 2.3396 -6.8103 5.2525 13 6 3.2120 -6.1680 6.1271 14 6 3.6744 -6.8252 7.2517 15 6 3.2733 -8.1254 7.5273 16 6 2.4075 -8.7841 6.6848 17 6 1.9229 -8.1379 5.5326 18 6 1.0365 -8.8037 4.6632 19 1 1.1037 -8.6439 3.5972 20 6 0.0666 -9.6743 5.1820 21 7 -0.6161 -10.4452 4.3783 22 14 -0.2485 -9.7312 7.0224 23 1 0.5895 -10.7927 7.6356 24 1 0.0967 -8.4184 7.6246 25 1 -1.6825 -10.0276 7.2700 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8934 -0.5137 -0.8901 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.1493 -2.4723 0.8049 34 1 1.8327 -2.1780 3.5296 35 1 3.2857 -2.6917 2.6389 36 1 2.0492 -4.6478 1.7488 37 1 0.5960 -4.1346 2.6393 38 1 2.7315 -4.3535 4.4740 39 1 3.5317 -5.1566 5.9240 40 1 4.3545 -6.3220 7.9230 41 1 3.6439 -8.6241 8.4106 42 1 2.1005 -9.7953 6.9074 43 1 -1.2869 -11.0469 4.7370 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600945657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:43 Heat of formation + Delta-G solvation = -89.844894 kcal Electronic energy + Delta-G solvation = -23917.794666 eV Core-core repulsion = 20347.090687 eV Total energy + Delta-G solvation = -3570.703979 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.07674 -40.72248 -38.83079 -36.93336 -35.62662 -35.45924 -34.79261 -32.29780 -32.05923 -29.81264 -27.93560 -27.19923 -25.18710 -23.94162 -23.32248 -22.66703 -21.24054 -20.87101 -19.46330 -18.53914 -18.08774 -17.30071 -17.02481 -16.88123 -16.46183 -16.15179 -15.81576 -15.72777 -15.30948 -15.25278 -14.86749 -14.53829 -14.42777 -14.10645 -13.83787 -13.67685 -13.28598 -13.17029 -12.95238 -12.84533 -12.79723 -12.68111 -12.50280 -12.19717 -12.05587 -12.03721 -11.97515 -11.61480 -11.08629 -10.87110 -10.35905 -10.21342 -10.04755 -9.52317 -9.41595 -8.82466 -6.48356 0.33607 0.83843 1.24310 1.37260 1.46548 1.59625 1.85966 2.10132 2.24447 2.69544 2.71463 3.53423 3.59305 3.74030 3.98745 4.01728 4.07733 4.22420 4.26223 4.36668 4.44769 4.50210 4.71129 4.77017 4.80628 4.81118 4.89216 4.90236 4.94687 5.01653 5.09102 5.25705 5.29968 5.32543 5.37603 5.46386 5.55074 5.68643 5.86976 5.96251 6.27013 6.46483 6.47443 6.64619 6.78882 6.88463 7.18345 7.59737 8.21586 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.022144 B = 0.002825 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.150921 B = 9908.117274 C =10830.305395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C -0.132 4.132 4 C 0.512 3.488 5 O -0.584 6.584 6 N -0.718 5.718 7 C 0.122 3.878 8 C 0.120 3.880 9 N -0.726 5.726 10 C 0.557 3.443 11 O -0.574 6.574 12 C -0.266 4.266 13 C -0.040 4.040 14 C -0.232 4.232 15 C -0.062 4.062 16 C -0.246 4.246 17 C 0.099 3.901 18 C -0.448 4.448 19 H 0.074 0.926 20 C 0.037 3.963 21 N -0.848 5.848 22 Si 0.966 3.034 23 H -0.249 1.249 24 H -0.249 1.249 25 H -0.281 1.281 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.121 0.879 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.416 0.584 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.409 0.591 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.136 0.864 42 H 0.102 0.898 43 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.613 17.958 -3.766 18.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.131 4.131 3 C -0.190 4.190 4 C 0.300 3.700 5 O -0.464 6.464 6 N -0.371 5.371 7 C -0.003 4.003 8 C -0.004 4.004 9 N -0.381 5.381 10 C 0.350 3.650 11 O -0.454 6.454 12 C -0.271 4.271 13 C -0.058 4.058 14 C -0.250 4.250 15 C -0.080 4.080 16 C -0.265 4.265 17 C 0.095 3.905 18 C -0.477 4.477 19 H 0.092 0.908 20 C -0.178 4.178 21 N -0.474 5.474 22 Si 0.788 3.212 23 H -0.174 1.174 24 H -0.173 1.173 25 H -0.207 1.207 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.139 0.861 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.253 0.747 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.247 0.753 39 H 0.158 0.842 40 H 0.161 0.839 41 H 0.153 0.847 42 H 0.119 0.881 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.406 17.766 -3.900 18.506 hybrid contribution -0.454 -0.685 0.291 0.872 sum 2.952 17.082 -3.609 17.707 Atomic orbital electron populations 1.21820 0.91451 1.03388 1.03438 1.21378 0.98626 0.97616 0.95446 1.21625 1.00993 0.93835 1.02555 1.21396 0.79029 0.81302 0.88236 1.90687 1.39906 1.66956 1.48868 1.45809 1.53842 1.12181 1.25273 1.21245 0.99786 0.90226 0.89047 1.21244 0.99375 0.91210 0.88621 1.45544 1.55317 1.11455 1.25812 1.18462 0.79308 0.81329 0.85911 1.90735 1.39762 1.66664 1.48265 1.19766 1.11536 0.95516 1.00275 1.21247 0.93050 0.98758 0.92775 1.20948 1.07572 0.96022 1.00490 1.21254 0.94267 0.95102 0.97408 1.21253 1.05490 1.00016 0.99788 1.17831 0.90865 0.90492 0.91344 1.19944 1.12830 1.18240 0.96695 0.90758 1.27094 0.94540 0.91329 1.04796 1.69617 1.19741 1.17900 1.40176 0.85506 0.77186 0.81152 0.77345 1.17366 1.17297 1.20733 0.91183 0.93118 0.89385 0.86077 0.93243 0.89565 0.93472 0.74707 0.90918 0.90728 0.91669 0.91885 0.75335 0.84189 0.83898 0.84658 0.88062 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.09 71.98 0.65 -0.74 16 2 C -0.11 -1.41 3.26 -11.54 -0.04 -1.44 16 3 C -0.13 -1.84 8.48 71.98 0.61 -1.23 16 4 C 0.51 10.46 7.15 87.66 0.63 11.09 16 5 O -0.58 -17.02 15.98 -3.05 -0.05 -17.07 16 6 N -0.72 -12.73 5.45 -463.05 -2.52 -15.25 16 7 C 0.12 2.53 5.79 86.38 0.50 3.03 16 8 C 0.12 3.13 5.79 86.38 0.50 3.63 16 9 N -0.73 -22.87 5.51 -466.35 -2.57 -25.44 16 10 C 0.56 24.87 7.72 86.67 0.67 25.54 16 11 O -0.57 -31.29 13.54 -4.05 -0.05 -31.35 16 12 C -0.27 -12.07 5.92 -19.70 -0.12 -12.18 16 13 C -0.04 -1.40 9.52 22.50 0.21 -1.18 16 14 C -0.23 -7.65 10.03 22.41 0.22 -7.43 16 15 C -0.06 -2.28 10.01 22.26 0.22 -2.06 16 16 C -0.25 -11.21 7.00 22.72 0.16 -11.06 16 17 C 0.10 5.11 5.03 -21.11 -0.11 5.01 16 18 C -0.45 -26.57 8.31 23.41 0.19 -26.38 16 19 H 0.07 5.02 5.96 -2.91 -0.02 5.00 16 20 C 0.04 2.05 5.47 85.37 0.47 2.51 16 21 N -0.85 -48.94 13.92 21.88 0.30 -48.64 16 22 Si 0.97 43.36 24.52 68.60 1.68 45.05 16 23 H -0.25 -10.23 6.76 99.48 0.67 -9.56 16 24 H -0.25 -11.27 6.73 99.48 0.67 -10.60 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 26 H 0.07 0.58 7.57 -2.39 -0.02 0.56 16 27 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 0.81 8.10 -2.39 -0.02 0.79 16 31 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 33 H 0.42 5.35 7.89 -92.71 -0.73 4.62 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.41 10.21 6.52 -92.71 -0.60 9.61 16 39 H 0.14 3.62 6.42 -2.91 -0.02 3.60 16 40 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 41 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 42 H 0.10 4.60 5.01 -2.91 -0.01 4.58 16 43 H 0.29 15.10 8.29 -92.71 -0.77 14.34 16 Total: -1.00 -77.41 353.20 1.21 -76.20 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: -0.37 Total: 29.39 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 4.78 Total: -12.89 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -4.79 Total: -89.32 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -0.10 Total: -48.42 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.68 Total: 45.05 kcal Total: -77.41 1.21 -76.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600945657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.646 kcal (2) G-P(sol) polarization free energy of solvation -77.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds