Wall clock time and date at job start Tue Mar 31 2020 09:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34778 * 119.99625 * 2 1 4 4 O 1.21288 * 120.00023 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99932 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47043 * 59.99622 * 5 3 2 7 7 C 1.53007 * 109.46651 * 299.99589 * 5 3 2 8 8 C 1.52995 * 109.47299 * 179.97438 * 5 3 2 9 9 N 1.46494 * 109.47394 * 179.97438 * 8 5 3 10 10 C 1.34776 * 120.00009 * 179.97438 * 9 8 5 11 11 O 1.21609 * 120.00181 * 0.02562 * 10 9 8 12 12 C 1.47435 * 119.99851 * 180.02562 * 10 9 8 13 13 C 1.39235 * 120.28378 * 356.68142 * 12 10 9 14 14 C 1.38213 * 120.09167 * 180.28304 * 13 12 10 15 15 C 1.38829 * 120.67951 * 359.69388 * 14 13 12 16 16 C 1.37601 * 120.56944 * 0.02562 * 15 14 13 17 17 C 1.40712 * 119.87956 * 0.02562 * 16 15 14 18 18 C 1.40885 * 120.32562 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99856 * 145.79790 * 18 17 16 20 20 C 1.40271 * 120.00127 * 325.78891 * 18 17 16 21 21 N 1.30625 * 120.00346 * 340.75265 * 20 18 17 22 22 Si 1.86800 * 119.99870 * 160.74583 * 20 18 17 23 23 H 1.48499 * 109.47325 * 180.02562 * 22 20 18 24 24 H 1.48501 * 109.47377 * 299.99957 * 22 20 18 25 25 H 1.48501 * 109.47284 * 60.00488 * 22 20 18 26 26 H 1.09004 * 109.46517 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47291 * 299.99717 * 1 2 3 28 28 H 1.08999 * 109.47375 * 60.00589 * 1 2 3 29 29 H 0.96994 * 120.00232 * 179.97438 * 2 1 3 30 30 H 1.09009 * 109.46583 * 180.02562 * 6 5 3 31 31 H 1.09004 * 109.47249 * 299.99664 * 6 5 3 32 32 H 1.08992 * 109.47176 * 60.00116 * 6 5 3 33 33 H 1.08996 * 109.46885 * 300.00089 * 7 5 3 34 34 H 1.08997 * 109.46911 * 60.00528 * 7 5 3 35 35 H 1.08998 * 109.46537 * 180.02562 * 7 5 3 36 36 H 1.09004 * 109.47250 * 59.99582 * 8 5 3 37 37 H 1.09005 * 109.47069 * 299.99758 * 8 5 3 38 38 H 0.96994 * 119.99831 * 359.97438 * 9 8 5 39 39 H 1.08001 * 119.94893 * 359.97438 * 13 12 10 40 40 H 1.08002 * 119.66077 * 179.72069 * 14 13 12 41 41 H 1.08002 * 119.72114 * 180.02562 * 15 14 13 42 42 H 1.08002 * 120.06118 * 180.02562 * 16 15 14 43 43 H 0.97001 * 119.99430 * 354.82448 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6459 1.1673 -0.0006 6 6 4.1554 0.4463 -1.2501 7 6 4.1563 0.4459 1.2484 8 6 4.1558 2.6098 -0.0011 9 7 5.6208 2.6099 -0.0011 10 6 6.2946 3.7771 -0.0020 11 8 5.6865 4.8303 -0.0024 12 6 7.7689 3.7772 -0.0025 13 6 8.4711 2.5769 0.0676 14 6 9.8533 2.5820 0.0727 15 6 10.5575 3.7763 0.0021 16 6 9.8916 4.9780 -0.0738 17 6 8.4846 5.0006 -0.0797 18 6 7.7932 6.2257 -0.1566 19 1 6.8558 6.2842 -0.6899 20 6 8.3221 7.3695 0.4596 21 7 9.2225 7.2485 1.3982 22 14 7.7390 9.0656 -0.0622 23 1 8.4467 10.0994 0.7350 24 1 8.0309 9.2676 -1.5042 25 1 6.2762 9.1786 0.1673 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.9500 -0.8400 0.0004 30 1 5.2455 0.4460 -1.2502 31 1 3.7922 -0.5814 -1.2501 32 1 3.7917 0.9602 -2.1398 33 1 3.7932 0.9596 2.1386 34 1 3.7931 -0.5818 1.2483 35 1 5.2463 0.4463 1.2482 36 1 3.7928 3.1239 0.8889 37 1 3.7922 3.1234 -0.8911 38 1 6.1058 1.7699 -0.0003 39 1 7.9350 1.6410 0.1230 40 1 10.3909 1.6471 0.1318 41 1 11.6375 3.7621 0.0068 42 1 10.4477 5.9022 -0.1289 43 1 9.4706 6.3683 1.7216 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601353516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:12 Heat of formation + Delta-G solvation = -91.331944 kcal Electronic energy + Delta-G solvation = -24926.385713 eV Core-core repulsion = 21355.617250 eV Total energy + Delta-G solvation = -3570.768462 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.54796 -40.63033 -38.86844 -37.31420 -35.88136 -35.74295 -34.02674 -31.80972 -31.17105 -28.33614 -28.10334 -27.64337 -26.84273 -24.39874 -23.18496 -22.64648 -21.31453 -20.64408 -19.93988 -18.52710 -17.71876 -17.02941 -16.71464 -16.62278 -16.46384 -16.07054 -15.80190 -15.67909 -15.45164 -14.93963 -14.75744 -14.54360 -14.37451 -13.94108 -13.92476 -13.67574 -13.26042 -13.22547 -13.12646 -12.93957 -12.85688 -12.69533 -12.49051 -12.14896 -12.04009 -12.01998 -11.90975 -11.46883 -10.97151 -10.88269 -10.38669 -10.19611 -10.04351 -9.60539 -9.48537 -9.10763 -6.46527 0.40621 0.91707 1.44633 1.51948 1.60452 1.74860 1.99341 2.24920 2.29691 2.56672 2.73822 3.38093 3.56237 3.70023 3.74053 4.00626 4.21414 4.27403 4.45095 4.46446 4.53471 4.60900 4.64819 4.69848 4.75698 4.80517 4.87452 4.89685 4.91226 4.94437 5.14165 5.19255 5.25003 5.38279 5.43556 5.52554 5.65646 5.71855 5.89952 5.97171 6.20725 6.34955 6.47339 6.68450 6.85516 6.92289 7.18541 7.60064 8.04151 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017561 B = 0.003797 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.027911 B = 7372.648737 C = 8670.835391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.713 5.713 3 C 0.522 3.478 4 O -0.587 6.587 5 C -0.083 4.083 6 C -0.139 4.139 7 C -0.139 4.139 8 C 0.153 3.847 9 N -0.717 5.717 10 C 0.554 3.446 11 O -0.583 6.583 12 C -0.281 4.281 13 C -0.039 4.039 14 C -0.240 4.240 15 C -0.072 4.072 16 C -0.226 4.226 17 C 0.095 3.905 18 C -0.514 4.514 19 H 0.077 0.923 20 C -0.002 4.002 21 N -0.817 5.817 22 Si 1.113 2.887 23 H -0.262 1.262 24 H -0.258 1.258 25 H -0.276 1.276 26 H 0.117 0.883 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.421 0.579 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.037 0.963 37 H 0.039 0.961 38 H 0.408 0.592 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.125 0.875 42 H 0.088 0.912 43 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.943 -21.265 -2.241 23.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.366 5.366 3 C 0.308 3.692 4 O -0.467 6.467 5 C -0.086 4.086 6 C -0.196 4.196 7 C -0.197 4.197 8 C 0.028 3.972 9 N -0.373 5.373 10 C 0.348 3.652 11 O -0.464 6.464 12 C -0.286 4.286 13 C -0.058 4.058 14 C -0.259 4.259 15 C -0.090 4.090 16 C -0.245 4.245 17 C 0.091 3.909 18 C -0.542 4.542 19 H 0.095 0.905 20 C -0.217 4.217 21 N -0.441 5.441 22 Si 0.931 3.069 23 H -0.186 1.186 24 H -0.183 1.183 25 H -0.202 1.202 26 H 0.136 0.864 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.258 0.742 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.247 0.753 39 H 0.157 0.843 40 H 0.159 0.841 41 H 0.143 0.857 42 H 0.106 0.894 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.578 -18.209 -1.940 20.666 hybrid contribution 0.037 -1.621 -0.104 1.625 sum -9.541 -19.830 -2.045 22.101 Atomic orbital electron populations 1.21704 0.78676 1.04489 1.01274 1.45617 1.08272 1.08224 1.74442 1.20633 0.89924 0.83894 0.74795 1.90739 1.71236 1.33523 1.51208 1.20902 0.91279 0.95256 1.01184 1.21928 1.02820 1.01198 0.93675 1.21932 1.02811 1.01218 0.93716 1.20787 0.80002 0.96003 1.00363 1.45645 1.05994 1.08230 1.77460 1.18552 0.88217 0.83172 0.75302 1.90683 1.71029 1.32851 1.51873 1.19752 0.91215 0.95186 1.22414 1.21151 0.94717 0.95508 0.94397 1.20839 0.93671 0.97642 1.13773 1.21182 0.99508 0.92478 0.95849 1.21203 0.93793 0.97498 1.12008 1.17897 0.92303 0.92890 0.87761 1.21099 1.08088 0.94867 1.30166 0.90526 1.28405 0.92093 1.08771 0.92463 1.70498 1.24016 1.29730 1.19891 0.83049 0.76535 0.69568 0.77732 1.18569 1.18266 1.20151 0.86415 0.93498 0.93438 0.74157 0.90244 0.87911 0.93185 0.93310 0.87871 0.90259 0.94448 0.94214 0.75256 0.84292 0.84137 0.85673 0.89374 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 10.70 127.77 1.37 2.37 16 2 N -0.71 -9.75 5.50 -484.49 -2.66 -12.42 16 3 C 0.52 12.49 6.48 87.66 0.57 13.06 16 4 O -0.59 -20.91 15.98 -3.05 -0.05 -20.96 16 5 C -0.08 -1.75 0.63 -52.93 -0.03 -1.78 16 6 C -0.14 -2.07 8.20 71.98 0.59 -1.48 16 7 C -0.14 -2.12 8.20 71.98 0.59 -1.53 16 8 C 0.15 5.22 3.85 86.38 0.33 5.55 16 9 N -0.72 -24.96 4.91 -466.37 -2.29 -27.25 16 10 C 0.55 26.84 7.73 86.67 0.67 27.51 16 11 O -0.58 -34.21 13.56 -4.06 -0.06 -34.27 16 12 C -0.28 -13.67 5.92 -19.70 -0.12 -13.79 16 13 C -0.04 -1.48 9.53 22.50 0.21 -1.26 16 14 C -0.24 -8.73 10.03 22.41 0.22 -8.51 16 15 C -0.07 -2.97 10.01 22.26 0.22 -2.74 16 16 C -0.23 -11.48 7.87 22.72 0.18 -11.30 16 17 C 0.10 5.31 5.17 -21.11 -0.11 5.20 16 18 C -0.51 -30.79 7.65 23.41 0.18 -30.61 16 19 H 0.08 4.91 5.92 -2.91 -0.02 4.89 16 20 C 0.00 -0.11 5.04 85.37 0.43 0.32 16 21 N -0.82 -46.80 12.57 21.88 0.28 -46.53 16 22 Si 1.11 49.25 29.98 68.60 2.06 51.31 16 23 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 24 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 25 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 26 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.42 2.32 7.67 -92.71 -0.71 1.60 16 30 H 0.08 1.11 6.86 -2.38 -0.02 1.09 16 31 H 0.10 0.70 7.57 -2.39 -0.02 0.68 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.10 0.72 7.56 -2.39 -0.02 0.71 16 35 H 0.08 1.13 6.86 -2.39 -0.02 1.11 16 36 H 0.04 1.50 8.10 -2.38 -0.02 1.48 16 37 H 0.04 1.58 8.10 -2.38 -0.02 1.56 16 38 H 0.41 10.69 4.20 -92.71 -0.39 10.30 16 39 H 0.14 3.79 6.41 -2.91 -0.02 3.77 16 40 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 41 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 42 H 0.09 4.72 6.94 -2.91 -0.02 4.70 16 43 H 0.28 16.59 6.55 -92.71 -0.61 15.99 16 Total: -1.00 -83.64 350.41 2.69 -80.95 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 0.11 Total: 28.16 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: 5.31 Total: -19.00 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -4.68 Total: -86.19 kcal Atomic # 8 Polarization: -55.13 SS G_CDS: -0.10 Total: -55.23 kcal Atomic # 14 Polarization: 49.25 SS G_CDS: 2.06 Total: 51.31 kcal Total: -83.64 2.69 -80.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601353516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.383 kcal (2) G-P(sol) polarization free energy of solvation -83.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds