Wall clock time and date at job start Tue Mar 31 2020 08:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47115 * 2 1 4 4 C 1.52999 * 109.47157 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46568 * 54.99754 * 4 3 2 6 6 C 1.53004 * 109.47139 * 174.99253 * 4 3 2 7 7 S 1.81393 * 109.47046 * 294.99748 * 4 3 2 8 8 O 1.42098 * 110.54306 * 73.37802 * 7 4 3 9 9 O 1.42096 * 110.54345 * 296.62358 * 7 4 3 10 10 N 1.65603 * 104.44952 * 184.99853 * 7 4 3 11 11 C 1.47081 * 120.88132 * 270.02362 * 10 7 4 12 12 C 1.53235 * 108.52054 * 231.16109 * 11 10 7 13 13 N 1.46906 * 109.34079 * 306.16959 * 12 11 10 14 14 C 1.46898 * 110.99801 * 187.25100 * 13 12 11 15 15 C 1.50700 * 109.46835 * 170.00134 * 14 13 12 16 16 H 1.08001 * 120.00412 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00313 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99363 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00176 * 179.97438 * 17 15 14 20 20 H 1.48489 * 109.46983 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46698 * 120.00167 * 19 17 15 22 22 H 1.48495 * 109.46897 * 239.99961 * 19 17 15 23 23 C 1.46896 * 111.26658 * 63.10656 * 13 12 11 24 24 C 1.47082 * 120.88368 * 89.99830 * 10 7 4 25 25 H 1.08996 * 109.46828 * 60.00766 * 1 2 3 26 26 H 1.09000 * 109.46878 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46962 * 300.00550 * 1 2 3 28 28 H 1.08994 * 109.46962 * 239.99450 * 2 1 3 29 29 H 1.09006 * 109.46724 * 119.99811 * 2 1 3 30 30 H 1.08998 * 109.47164 * 59.99094 * 3 2 1 31 31 H 1.09006 * 109.46645 * 299.99546 * 3 2 1 32 32 H 1.08998 * 109.46562 * 60.00568 * 6 4 3 33 33 H 1.09003 * 109.46873 * 179.97438 * 6 4 3 34 34 H 1.08997 * 109.47021 * 300.00549 * 6 4 3 35 35 H 1.09002 * 109.63012 * 111.45553 * 11 10 7 36 36 H 1.09000 * 109.63054 * 350.86815 * 11 10 7 37 37 H 1.08997 * 109.49554 * 186.21402 * 12 11 10 38 38 H 1.08997 * 109.49382 * 66.13002 * 12 11 10 39 39 H 1.08993 * 109.47768 * 290.00114 * 14 13 12 40 40 H 1.09004 * 109.47075 * 50.00431 * 14 13 12 41 41 H 0.97003 * 119.99498 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.49756 * 56.85119 * 23 13 12 43 43 H 1.08998 * 109.49494 * 176.90931 * 23 13 12 44 44 H 1.09001 * 109.62379 * 9.12965 * 24 10 7 45 45 H 1.08998 * 109.62760 * 248.55036 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8529 -0.8410 6 6 4.0801 2.8795 -0.1253 7 16 4.1740 0.7200 1.5510 8 8 3.9814 -0.6878 1.5534 9 8 3.7776 1.5156 2.6596 10 7 5.8180 0.9071 1.4812 11 6 6.6713 -0.1317 0.8845 12 6 7.7912 -0.4695 1.8743 13 7 8.4905 0.7643 2.2574 14 6 9.6776 0.4660 3.0697 15 6 10.4996 1.7181 3.2364 16 1 10.1731 2.6427 2.7839 17 6 11.6691 1.6829 3.9658 18 7 12.0675 0.5566 4.5156 19 14 12.6884 3.2347 4.1719 20 1 12.0280 4.3587 3.4609 21 1 12.8044 3.5626 5.6156 22 1 14.0428 3.0164 3.6035 23 6 7.5916 1.6903 2.9592 24 6 6.4635 2.1166 2.0137 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.7165 3.4691 0.7163 33 1 5.1701 2.8795 -0.1243 34 1 3.7171 3.3136 -1.0569 35 1 7.1036 0.2388 -0.0450 36 1 6.0773 -1.0237 0.6854 37 1 8.4959 -1.1564 1.4057 38 1 7.3637 -0.9359 2.7619 39 1 9.3660 0.1029 4.0490 40 1 10.2756 -0.2977 2.5724 41 1 12.8905 0.5318 5.0285 42 1 7.1667 1.1938 3.8316 43 1 8.1515 2.5695 3.2777 44 1 5.7320 2.7111 2.5611 45 1 6.8758 2.7033 1.1928 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601536317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:01 Heat of formation + Delta-G solvation = -77.853047 kcal Electronic energy + Delta-G solvation = -24379.952330 eV Core-core repulsion = 20945.212308 eV Total energy + Delta-G solvation = -3434.740022 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -38.34442 -37.19887 -36.82789 -35.90811 -34.45147 -32.59278 -32.21617 -30.72973 -27.85181 -27.08513 -25.06685 -23.39559 -22.80570 -21.77572 -21.73063 -20.11048 -18.57417 -17.70518 -16.98665 -16.37435 -15.94334 -15.23255 -14.81614 -14.71764 -14.42215 -14.33984 -14.14735 -13.87764 -13.62096 -13.48207 -13.34039 -12.93968 -12.56668 -12.44127 -12.24727 -12.16655 -11.99892 -11.94695 -11.74388 -11.44646 -11.25318 -11.14551 -11.09843 -10.94380 -10.82116 -10.70956 -10.56101 -10.47047 -10.28190 -9.84883 -9.27139 -8.77806 -8.45343 -7.27147 -6.04382 -4.06018 0.20914 2.63753 3.30042 3.37547 3.41603 3.79800 3.94626 4.17013 4.40278 4.40680 4.57762 4.80210 4.83038 4.88466 4.94373 5.07747 5.20919 5.31301 5.36390 5.41174 5.44525 5.46318 5.51342 5.54825 5.69691 5.71572 5.74412 5.80980 5.81803 5.87640 5.95133 6.02930 6.20783 6.36403 6.50628 6.57267 6.77694 7.26589 7.33620 7.77387 8.05307 8.16516 8.51467 9.01644 9.58381 11.06563 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.035430 B = 0.003319 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.108612 B = 8433.984017 C = 8780.086217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.155 4.155 3 C -0.105 4.105 4 C -0.595 4.595 5 H 0.134 0.866 6 C -0.139 4.139 7 S 2.606 3.394 8 O -0.957 6.957 9 O -0.954 6.954 10 N -0.996 5.996 11 C 0.124 3.876 12 C 0.044 3.956 13 N -0.534 5.534 14 C 0.192 3.808 15 C -0.508 4.508 16 H 0.065 0.935 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.054 3.946 24 C 0.121 3.879 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.028 0.972 39 H -0.009 1.009 40 H 0.031 0.969 41 H 0.261 0.739 42 H 0.026 0.974 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.754 1.723 -11.586 22.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.193 4.193 3 C -0.144 4.144 4 C -0.704 4.704 5 H 0.152 0.848 6 C -0.197 4.197 7 S 2.700 3.300 8 O -0.947 6.947 9 O -0.945 6.945 10 N -0.835 5.835 11 C -0.001 4.001 12 C -0.086 4.086 13 N -0.259 5.259 14 C 0.067 3.933 15 C -0.546 4.546 16 H 0.083 0.917 17 C -0.147 4.147 18 N -0.537 5.537 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.077 4.077 24 C -0.004 4.004 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.047 0.953 39 H 0.009 0.991 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.044 0.956 43 H 0.115 0.885 44 H 0.106 0.894 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.941 1.482 -11.214 22.926 hybrid contribution 0.597 0.563 0.226 0.851 sum -19.344 2.044 -10.988 22.341 Atomic orbital electron populations 1.21738 0.94846 1.02217 1.02024 1.21959 0.97358 0.95992 1.03974 1.21485 0.89994 0.98268 1.04671 1.30529 1.06049 1.09550 1.24231 0.84770 1.21623 1.02308 0.91589 1.04180 1.05288 0.73204 0.74696 0.76857 1.93560 1.84623 1.29265 1.87234 1.93564 1.81655 1.71865 1.47373 1.57658 1.23193 1.28349 1.74323 1.21613 0.92144 0.89675 0.96692 1.22317 0.95240 0.93578 0.97512 1.62036 1.07270 1.11518 1.45115 1.19737 0.85825 0.97401 0.90303 1.21185 1.06195 0.95693 1.31554 0.91731 1.25005 0.97651 0.96331 0.95692 1.69972 1.23288 1.25609 1.34868 0.86438 0.80061 0.83198 0.77687 1.19641 1.21141 1.21056 1.22265 0.92807 0.98838 0.93745 1.21746 0.95629 0.85286 0.97746 0.92503 0.92170 0.92419 0.90751 0.90724 0.90421 0.89560 0.90949 0.90479 0.90717 0.90910 0.89423 0.90139 0.95344 0.99071 0.95044 0.92954 0.95556 0.88541 0.89378 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.16 -1.39 5.64 -26.73 -0.15 -1.54 16 3 C -0.11 -0.88 4.68 -26.73 -0.13 -1.01 16 4 C -0.59 -5.43 3.04 -26.73 -0.08 -5.51 16 5 H 0.13 1.01 8.14 -51.92 -0.42 0.58 16 6 C -0.14 -1.14 8.85 37.16 0.33 -0.81 16 7 S 2.61 34.91 4.41 -107.50 -0.47 34.44 16 8 O -0.96 -14.90 14.72 -57.54 -0.85 -15.74 16 9 O -0.95 -15.37 16.60 -57.54 -0.95 -16.33 16 10 N -1.00 -14.09 2.87 -113.23 -0.33 -14.41 16 11 C 0.12 1.75 6.62 -3.60 -0.02 1.73 16 12 C 0.04 0.78 5.62 -3.70 -0.02 0.76 16 13 N -0.53 -11.20 4.62 -235.77 -1.09 -12.29 16 14 C 0.19 4.94 4.72 -4.98 -0.02 4.91 16 15 C -0.51 -13.92 8.41 -34.44 -0.29 -14.21 16 16 H 0.06 1.73 7.13 -52.49 -0.37 1.36 16 17 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 18 N -0.90 -26.51 13.29 55.43 0.74 -25.78 16 19 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C 0.05 1.02 5.46 -3.70 -0.02 1.00 16 24 C 0.12 1.79 5.53 -3.60 -0.02 1.77 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.81 5.84 -51.93 -0.30 0.51 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.63 6.35 -51.93 -0.33 0.30 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.11 6.87 -51.93 -0.36 0.75 16 37 H 0.08 1.37 7.99 -51.93 -0.41 0.95 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 39 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 40 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.10 1.93 6.67 -51.93 -0.35 1.59 16 44 H 0.09 1.20 6.87 -51.93 -0.36 0.85 16 45 H 0.07 0.97 7.57 -51.93 -0.39 0.58 16 LS Contribution 358.71 15.07 5.41 5.41 Total: -1.00 -32.92 358.71 -10.64 -43.57 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -7.92 Total: -2.94 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -0.16 Total: -12.21 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.68 Total: -52.48 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -1.80 Total: -32.07 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 34.91 SS G_CDS: -0.47 Total: 34.44 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.92 -10.64 -43.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601536317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.285 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds