Wall clock time and date at job start Tue Mar 31 2020 09:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 119.99898 * 2 1 4 4 C 1.53001 * 109.47041 * 125.00041 * 3 2 1 5 5 O 1.42902 * 109.47136 * 179.97438 * 4 3 2 6 6 C 1.42895 * 113.99929 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.46981 * 180.02562 * 6 5 4 8 8 O 1.21285 * 120.00036 * 4.95859 * 7 6 5 9 9 N 1.34778 * 120.00182 * 184.95659 * 7 6 5 10 10 C 1.46500 * 119.99808 * 4.96621 * 9 7 6 11 11 C 1.50704 * 109.47160 * 277.10487 * 10 9 7 12 12 H 1.07998 * 119.99901 * 114.44117 * 11 10 9 13 13 C 1.37876 * 119.99901 * 294.44577 * 11 10 9 14 14 N 1.31511 * 120.00022 * 4.53305 * 13 11 10 15 15 Si 1.86801 * 119.99662 * 184.53717 * 13 11 10 16 16 H 1.48508 * 109.47094 * 89.99717 * 15 13 11 17 17 H 1.48502 * 109.46658 * 209.99486 * 15 13 11 18 18 H 1.48495 * 109.47282 * 329.99725 * 15 13 11 19 19 C 1.46497 * 120.00212 * 184.96505 * 9 7 6 20 20 C 1.50705 * 109.46974 * 275.57104 * 19 9 7 21 21 C 1.38672 * 120.41634 * 269.72100 * 20 19 9 22 22 C 1.38631 * 118.41635 * 179.78380 * 21 20 19 23 23 C 1.38229 * 119.16302 * 0.51227 * 22 21 20 24 24 N 1.31851 * 120.75997 * 359.72626 * 23 22 21 25 25 C 1.31884 * 121.72756 * 0.02562 * 24 23 22 26 26 H 1.07998 * 119.99989 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.00026 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.00026 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47247 * 4.99630 * 3 2 1 30 30 H 1.09005 * 109.47093 * 244.99538 * 3 2 1 31 31 H 1.09003 * 109.46895 * 60.00185 * 4 3 2 32 32 H 1.08997 * 109.46968 * 299.99974 * 4 3 2 33 33 H 1.09003 * 109.47135 * 60.00286 * 6 5 4 34 34 H 1.09000 * 109.47339 * 299.99934 * 6 5 4 35 35 H 1.08997 * 109.47091 * 157.10326 * 10 9 7 36 36 H 1.09006 * 109.47062 * 37.10513 * 10 9 7 37 37 H 0.96996 * 120.00161 * 175.00537 * 14 13 11 38 38 H 1.09000 * 109.46970 * 35.56924 * 19 9 7 39 39 H 1.09001 * 109.46862 * 155.57158 * 19 9 7 40 40 H 1.07997 * 120.79246 * 0.02562 * 21 20 19 41 41 H 1.08000 * 120.41559 * 180.21689 * 22 21 20 42 42 H 1.07997 * 119.61965 * 179.74441 * 23 22 21 43 43 H 1.08003 * 119.61558 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 8 3.7500 2.5704 1.1813 6 6 4.6895 2.6991 2.2503 7 6 5.3815 4.0343 2.1528 8 8 5.0357 4.8366 1.3115 9 7 6.3846 4.3370 3.0006 10 6 6.8752 3.3295 3.9442 11 6 5.9867 3.3061 5.1612 12 1 5.3939 2.4304 5.3803 13 6 5.9305 4.4029 5.9949 14 7 6.5822 5.5012 5.6813 15 14 4.9287 4.3285 7.5698 16 1 5.7864 3.8400 8.6794 17 1 4.4202 5.6847 7.8974 18 1 3.7834 3.4017 7.3847 19 6 6.9843 5.6734 2.9785 20 6 8.0465 5.7297 1.9109 21 6 9.3614 5.4071 2.2111 22 6 10.3039 5.4686 1.1964 23 6 9.9066 5.8569 -0.0693 24 7 8.6479 6.1613 -0.3173 25 6 7.7238 6.1093 0.6222 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6214 1.4026 -0.9314 31 1 3.7400 0.5066 1.0920 32 1 2.4773 1.2356 2.1130 33 1 5.4285 1.9007 2.1826 34 1 4.1664 2.6302 3.2041 35 1 7.8939 3.5768 4.2428 36 1 6.8642 2.3492 3.4674 37 1 6.4852 6.2959 6.2290 38 1 6.2138 6.4139 2.7638 39 1 7.4327 5.8864 3.9489 40 1 9.6437 5.1113 3.2107 41 1 11.3365 5.2208 1.3935 42 1 10.6355 5.9114 -0.8643 43 1 6.7028 6.3664 0.3813 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604529928.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:32 Heat of formation + Delta-G solvation = -27.429840 kcal Electronic energy + Delta-G solvation = -24800.846285 eV Core-core repulsion = 21232.848825 eV Total energy + Delta-G solvation = -3567.997459 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.78423 -38.77997 -37.33389 -35.14233 -34.80692 -32.80889 -31.87994 -31.21466 -29.65011 -27.85831 -27.12446 -24.83959 -23.26434 -22.83781 -22.75811 -21.49200 -19.91318 -18.54042 -16.91613 -16.72343 -16.29036 -16.01182 -15.86056 -15.48670 -15.08745 -14.85255 -14.67788 -14.57899 -14.08787 -13.55700 -13.27735 -13.13422 -12.78060 -12.58763 -12.55945 -12.29352 -12.00539 -11.90237 -11.33983 -11.21910 -11.09470 -11.08071 -11.03843 -10.90021 -10.64047 -9.98731 -9.78543 -9.47273 -9.38010 -9.25082 -9.01856 -8.97757 -8.72834 -8.37794 -7.37164 -6.32932 -4.50292 1.57138 1.75493 2.13140 3.11594 3.21366 3.22879 3.60352 3.65794 4.16705 4.26339 4.61846 4.90631 4.91257 5.01570 5.09450 5.24474 5.25142 5.39768 5.47653 5.52971 5.53480 5.62804 5.69583 5.74142 5.79090 5.93988 5.99851 6.05850 6.09614 6.23564 6.45371 6.50491 6.53195 6.55267 6.64905 6.89216 6.97065 7.16393 7.23345 7.45455 7.65241 7.79277 7.89348 8.41146 8.44130 8.77781 9.24853 9.27429 10.66249 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.008606 B = 0.005208 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3252.870784 B = 5374.986817 C = 8122.936941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.149 4.149 3 C -0.093 4.093 4 C 0.066 3.934 5 O -0.370 6.370 6 C 0.053 3.947 7 C 0.512 3.488 8 O -0.561 6.561 9 N -0.565 5.565 10 C 0.225 3.775 11 C -0.543 4.543 12 H 0.062 0.938 13 C 0.079 3.921 14 N -0.876 5.876 15 Si 0.900 3.100 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.152 3.848 20 C -0.138 4.138 21 C -0.064 4.064 22 C -0.184 4.184 23 C 0.080 3.920 24 N -0.495 5.495 25 C 0.115 3.885 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.026 0.974 37 H 0.269 0.731 38 H 0.064 0.936 39 H 0.146 0.854 40 H 0.133 0.867 41 H 0.126 0.874 42 H 0.145 0.855 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.048 -6.016 -5.386 8.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.167 4.167 3 C -0.131 4.131 4 C -0.011 4.011 5 O -0.288 6.288 6 C -0.026 4.026 7 C 0.299 3.701 8 O -0.441 6.441 9 N -0.296 5.296 10 C 0.106 3.894 11 C -0.582 4.582 12 H 0.080 0.920 13 C -0.125 4.125 14 N -0.513 5.513 15 Si 0.727 3.273 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.198 1.198 19 C 0.029 3.971 20 C -0.142 4.142 21 C -0.091 4.091 22 C -0.204 4.204 23 C -0.077 4.077 24 N -0.203 5.203 25 C -0.042 4.042 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.127 0.873 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.044 0.956 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.163 0.837 40 H 0.151 0.849 41 H 0.144 0.856 42 H 0.163 0.837 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.395 -5.061 -6.666 8.379 hybrid contribution -0.214 -0.591 2.027 2.122 sum -0.609 -5.651 -4.639 7.337 Atomic orbital electron populations 1.23875 0.95908 1.01891 1.01355 1.22849 0.96005 0.98150 0.99692 1.20646 0.98043 0.95592 0.98775 1.22382 0.93903 0.86807 0.98038 1.87940 1.54745 1.36580 1.49568 1.22304 0.92279 0.96785 0.91245 1.20010 0.80619 0.88055 0.81385 1.90568 1.65774 1.51053 1.36724 1.48578 1.32768 1.13489 1.34765 1.19440 0.96430 0.85984 0.87499 1.21520 1.27552 1.01676 1.07438 0.91961 1.24997 0.94518 0.95230 0.97793 1.69457 1.41003 1.01918 1.38968 0.86467 0.80183 0.77676 0.82931 1.20328 1.20995 1.19807 1.20875 0.92881 0.84750 0.98595 1.21885 0.96380 0.98316 0.97601 1.21591 0.92563 0.95324 0.99579 1.22052 1.00423 1.03222 0.94710 1.22614 0.93151 0.96356 0.95617 1.67686 1.01802 1.14708 1.36136 1.22994 0.98691 0.94036 0.88519 0.88492 0.88432 0.87277 0.90568 0.90102 0.93535 0.93285 0.91554 0.89508 0.93726 0.95555 0.92117 0.91740 0.83654 0.84864 0.85556 0.83716 0.82347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.83 14.32 29.01 0.42 -1.41 16 2 C -0.15 -1.54 9.52 -36.03 -0.34 -1.88 16 3 C -0.09 -1.17 6.03 -27.88 -0.17 -1.34 16 4 C 0.07 0.95 5.92 37.16 0.22 1.17 16 5 O -0.37 -7.09 9.88 -55.09 -0.54 -7.63 16 6 C 0.05 1.03 5.14 36.01 0.19 1.22 16 7 C 0.51 11.61 7.62 -10.98 -0.08 11.53 16 8 O -0.56 -14.01 14.74 -14.31 -0.21 -14.22 16 9 N -0.57 -12.43 2.36 -176.43 -0.42 -12.85 16 10 C 0.23 4.87 5.17 -5.19 -0.03 4.85 16 11 C -0.54 -12.74 8.61 -34.44 -0.30 -13.04 16 12 H 0.06 1.44 7.82 -52.49 -0.41 1.03 16 13 C 0.08 1.90 5.43 -17.82 -0.10 1.80 16 14 N -0.88 -21.19 9.66 55.43 0.54 -20.65 16 15 Si 0.90 19.15 29.54 -169.99 -5.02 14.13 16 16 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 C 0.15 3.25 4.66 -5.19 -0.02 3.23 16 20 C -0.14 -2.68 5.43 -104.48 -0.57 -3.24 16 21 C -0.06 -1.08 9.86 -39.28 -0.39 -1.47 16 22 C -0.18 -2.72 10.11 -39.44 -0.40 -3.11 16 23 C 0.08 1.25 11.18 -17.55 -0.20 1.05 16 24 N -0.49 -9.27 10.36 -13.25 -0.14 -9.40 16 25 C 0.11 2.27 10.37 -17.55 -0.18 2.09 16 26 H 0.10 0.76 8.06 -52.49 -0.42 0.34 16 27 H 0.10 0.90 7.84 -52.48 -0.41 0.49 16 28 H 0.11 0.99 8.06 -52.48 -0.42 0.56 16 29 H 0.08 0.99 7.79 -51.93 -0.40 0.58 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.16 7.05 -51.93 -0.37 0.80 16 34 H 0.09 1.69 7.63 -51.93 -0.40 1.30 16 35 H 0.04 0.98 8.01 -51.93 -0.42 0.57 16 36 H 0.03 0.52 6.66 -51.93 -0.35 0.17 16 37 H 0.27 6.31 8.32 -40.82 -0.34 5.97 16 38 H 0.06 1.47 7.62 -51.93 -0.40 1.07 16 39 H 0.15 3.25 5.19 -51.93 -0.27 2.98 16 40 H 0.13 2.13 8.06 -52.49 -0.42 1.70 16 41 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 42 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.16 3.32 7.06 -52.48 -0.37 2.95 16 LS Contribution 362.95 15.07 5.47 5.47 Total: -1.00 -27.92 362.95 -8.58 -36.50 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.30 Total: 7.24 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.95 Total: 1.43 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: -0.02 Total: -42.90 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.76 Total: -21.86 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -27.92 -8.58 -36.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604529928.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.066 kcal (2) G-P(sol) polarization free energy of solvation -27.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds