Wall clock time and date at job start Tue Mar 31 2020 09:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 119.99898 * 2 1 4 4 C 1.53001 * 109.47041 * 125.00041 * 3 2 1 5 5 O 1.42902 * 109.47136 * 179.97438 * 4 3 2 6 6 C 1.42895 * 113.99929 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.46981 * 180.02562 * 6 5 4 8 8 O 1.21285 * 120.00036 * 4.95859 * 7 6 5 9 9 N 1.34778 * 120.00182 * 184.95659 * 7 6 5 10 10 C 1.46500 * 119.99808 * 4.96621 * 9 7 6 11 11 C 1.50704 * 109.47160 * 277.10487 * 10 9 7 12 12 H 1.07998 * 119.99901 * 114.44117 * 11 10 9 13 13 C 1.37876 * 119.99901 * 294.44577 * 11 10 9 14 14 N 1.31511 * 120.00022 * 4.53305 * 13 11 10 15 15 Si 1.86801 * 119.99662 * 184.53717 * 13 11 10 16 16 H 1.48508 * 109.47094 * 89.99717 * 15 13 11 17 17 H 1.48502 * 109.46658 * 209.99486 * 15 13 11 18 18 H 1.48495 * 109.47282 * 329.99725 * 15 13 11 19 19 C 1.46497 * 120.00212 * 184.96505 * 9 7 6 20 20 C 1.50705 * 109.46974 * 275.57104 * 19 9 7 21 21 C 1.38672 * 120.41634 * 269.72100 * 20 19 9 22 22 C 1.38631 * 118.41635 * 179.78380 * 21 20 19 23 23 C 1.38229 * 119.16302 * 0.51227 * 22 21 20 24 24 N 1.31851 * 120.75997 * 359.72626 * 23 22 21 25 25 C 1.31884 * 121.72756 * 0.02562 * 24 23 22 26 26 H 1.07998 * 119.99989 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.00026 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.00026 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47247 * 4.99630 * 3 2 1 30 30 H 1.09005 * 109.47093 * 244.99538 * 3 2 1 31 31 H 1.09003 * 109.46895 * 60.00185 * 4 3 2 32 32 H 1.08997 * 109.46968 * 299.99974 * 4 3 2 33 33 H 1.09003 * 109.47135 * 60.00286 * 6 5 4 34 34 H 1.09000 * 109.47339 * 299.99934 * 6 5 4 35 35 H 1.08997 * 109.47091 * 157.10326 * 10 9 7 36 36 H 1.09006 * 109.47062 * 37.10513 * 10 9 7 37 37 H 0.96996 * 120.00161 * 175.00537 * 14 13 11 38 38 H 1.09000 * 109.46970 * 35.56924 * 19 9 7 39 39 H 1.09001 * 109.46862 * 155.57158 * 19 9 7 40 40 H 1.07997 * 120.79246 * 0.02562 * 21 20 19 41 41 H 1.08000 * 120.41559 * 180.21689 * 22 21 20 42 42 H 1.07997 * 119.61965 * 179.74441 * 23 22 21 43 43 H 1.08003 * 119.61558 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 8 3.7500 2.5704 1.1813 6 6 4.6895 2.6991 2.2503 7 6 5.3815 4.0343 2.1528 8 8 5.0357 4.8366 1.3115 9 7 6.3846 4.3370 3.0006 10 6 6.8752 3.3295 3.9442 11 6 5.9867 3.3061 5.1612 12 1 5.3939 2.4304 5.3803 13 6 5.9305 4.4029 5.9949 14 7 6.5822 5.5012 5.6813 15 14 4.9287 4.3285 7.5698 16 1 5.7864 3.8400 8.6794 17 1 4.4202 5.6847 7.8974 18 1 3.7834 3.4017 7.3847 19 6 6.9843 5.6734 2.9785 20 6 8.0465 5.7297 1.9109 21 6 9.3614 5.4071 2.2111 22 6 10.3039 5.4686 1.1964 23 6 9.9066 5.8569 -0.0693 24 7 8.6479 6.1613 -0.3173 25 6 7.7238 6.1093 0.6222 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6214 1.4026 -0.9314 31 1 3.7400 0.5066 1.0920 32 1 2.4773 1.2356 2.1130 33 1 5.4285 1.9007 2.1826 34 1 4.1664 2.6302 3.2041 35 1 7.8939 3.5768 4.2428 36 1 6.8642 2.3492 3.4674 37 1 6.4852 6.2959 6.2290 38 1 6.2138 6.4139 2.7638 39 1 7.4327 5.8864 3.9489 40 1 9.6437 5.1113 3.2107 41 1 11.3365 5.2208 1.3935 42 1 10.6355 5.9114 -0.8643 43 1 6.7028 6.3664 0.3813 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604529928.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:30 Heat of formation + Delta-G solvation = -41.415053 kcal Electronic energy + Delta-G solvation = -24801.452729 eV Core-core repulsion = 21232.848825 eV Total energy + Delta-G solvation = -3568.603904 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.25866 -40.36506 -38.72907 -36.83161 -35.86361 -34.48235 -33.45327 -32.61524 -30.76305 -29.50367 -28.66814 -26.38554 -24.91756 -24.26872 -23.91885 -22.93334 -20.79285 -20.19474 -18.63897 -18.15569 -17.66339 -17.46171 -17.28019 -16.90344 -16.74028 -16.37233 -16.14881 -15.84796 -15.44338 -14.94252 -14.58323 -14.47039 -14.23434 -14.02459 -13.93332 -13.78840 -13.73980 -13.29620 -12.82706 -12.78037 -12.66068 -12.45216 -12.35118 -12.11588 -11.97478 -11.72882 -11.54955 -10.87099 -10.67255 -10.62280 -10.49879 -10.36483 -10.26356 -9.84408 -9.12807 -8.14458 -6.36281 0.21491 0.39716 1.34422 1.42386 1.47865 1.53567 1.85933 2.18045 2.40324 2.89370 3.04777 3.33423 3.60183 3.93166 3.99897 4.05248 4.08174 4.13998 4.20639 4.22931 4.25283 4.28395 4.46224 4.46724 4.47722 4.64380 4.78230 4.89371 4.89862 4.93404 5.02237 5.09969 5.16912 5.26062 5.36525 5.51630 5.71792 5.81208 5.86360 5.87377 5.99758 6.08257 6.19907 6.61366 7.01325 7.07675 7.40217 7.52150 8.82620 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.008606 B = 0.005208 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3252.870784 B = 5374.986817 C = 8122.936941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.160 4.160 3 C -0.090 4.090 4 C 0.059 3.941 5 O -0.398 6.398 6 C 0.064 3.936 7 C 0.498 3.502 8 O -0.594 6.594 9 N -0.564 5.564 10 C 0.228 3.772 11 C -0.554 4.554 12 H 0.065 0.935 13 C 0.040 3.960 14 N -0.892 5.892 15 Si 0.951 3.049 16 H -0.271 1.271 17 H -0.292 1.292 18 H -0.273 1.273 19 C 0.162 3.838 20 C -0.154 4.154 21 C -0.068 4.068 22 C -0.165 4.165 23 C 0.081 3.919 24 N -0.515 5.515 25 C 0.097 3.903 26 H 0.118 0.882 27 H 0.095 0.905 28 H 0.126 0.874 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.039 0.961 36 H 0.047 0.953 37 H 0.267 0.733 38 H 0.035 0.965 39 H 0.137 0.863 40 H 0.143 0.857 41 H 0.172 0.828 42 H 0.187 0.813 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.237 -7.926 -5.424 9.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.178 4.178 3 C -0.128 4.128 4 C -0.017 4.017 5 O -0.317 6.317 6 C -0.015 4.015 7 C 0.286 3.714 8 O -0.477 6.477 9 N -0.294 5.294 10 C 0.109 3.891 11 C -0.592 4.592 12 H 0.083 0.917 13 C -0.163 4.163 14 N -0.529 5.529 15 Si 0.777 3.223 16 H -0.197 1.197 17 H -0.218 1.218 18 H -0.198 1.198 19 C 0.039 3.961 20 C -0.157 4.157 21 C -0.094 4.094 22 C -0.184 4.184 23 C -0.076 4.076 24 N -0.224 5.224 25 C -0.059 4.059 26 H 0.136 0.864 27 H 0.113 0.887 28 H 0.144 0.856 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.154 0.846 40 H 0.161 0.839 41 H 0.190 0.810 42 H 0.204 0.796 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.887 -6.989 -6.689 9.715 hybrid contribution -0.566 0.003 1.983 2.062 sum 0.322 -6.986 -4.706 8.429 Atomic orbital electron populations 1.24084 0.95733 1.02817 0.99639 1.22823 0.96279 0.97483 1.01171 1.20621 0.97575 0.96736 0.97828 1.22669 0.94346 0.85529 0.99137 1.87916 1.55108 1.39246 1.49417 1.22152 0.92702 0.95324 0.91344 1.20674 0.80654 0.89156 0.80945 1.90546 1.66699 1.52384 1.38043 1.48611 1.32703 1.13652 1.34448 1.19430 0.95730 0.86730 0.87163 1.21764 1.27705 1.01703 1.08032 0.91663 1.25597 0.95533 0.95255 0.99949 1.69571 1.41748 1.02100 1.39512 0.85676 0.79087 0.76992 0.80507 1.19691 1.21844 1.19773 1.20623 0.92585 0.84003 0.98917 1.21624 0.97041 1.00323 0.96716 1.21769 0.91804 0.95005 1.00844 1.22482 1.01937 1.00658 0.93343 1.23357 0.92455 0.94488 0.97301 1.67668 1.03127 1.15623 1.36013 1.22621 0.98233 0.95858 0.89236 0.86421 0.88693 0.85634 0.91704 0.90605 0.91600 0.92700 0.89365 0.89641 0.94245 0.93511 0.92370 0.94691 0.84579 0.83940 0.81044 0.79640 0.85015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.17 14.32 67.78 0.97 -2.19 16 2 C -0.16 -3.04 9.52 25.64 0.24 -2.79 16 3 C -0.09 -2.22 6.03 29.85 0.18 -2.04 16 4 C 0.06 1.66 5.92 71.98 0.43 2.09 16 5 O -0.40 -15.34 9.88 -129.99 -1.28 -16.62 16 6 C 0.06 2.48 5.14 71.24 0.37 2.85 16 7 C 0.50 23.17 7.62 87.66 0.67 23.84 16 8 O -0.59 -31.18 14.74 15.94 0.23 -30.94 16 9 N -0.56 -25.35 2.36 -830.48 -1.96 -27.30 16 10 C 0.23 9.79 5.17 85.63 0.44 10.23 16 11 C -0.55 -25.69 8.61 25.60 0.22 -25.47 16 12 H 0.07 2.94 7.82 -2.91 -0.02 2.92 16 13 C 0.04 1.89 5.43 84.65 0.46 2.35 16 14 N -0.89 -43.68 9.66 21.45 0.21 -43.48 16 15 Si 0.95 39.12 29.54 68.60 2.03 41.14 16 16 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 17 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 19 C 0.16 7.23 4.66 85.64 0.40 7.63 16 20 C -0.15 -6.07 5.43 -19.77 -0.11 -6.18 16 21 C -0.07 -2.20 9.86 22.47 0.22 -1.97 16 22 C -0.16 -4.28 10.11 22.36 0.23 -4.06 16 23 C 0.08 2.30 11.18 84.69 0.95 3.25 16 24 N -0.52 -19.06 10.36 -195.85 -2.03 -21.09 16 25 C 0.10 3.97 10.37 84.67 0.88 4.85 16 26 H 0.12 1.52 8.06 -2.91 -0.02 1.50 16 27 H 0.09 1.65 7.84 -2.91 -0.02 1.62 16 28 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 29 H 0.06 1.70 7.79 -2.39 -0.02 1.68 16 30 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 2.98 7.05 -2.39 -0.02 2.97 16 34 H 0.09 3.32 7.63 -2.39 -0.02 3.30 16 35 H 0.04 1.72 8.01 -2.39 -0.02 1.70 16 36 H 0.05 1.78 6.66 -2.38 -0.02 1.77 16 37 H 0.27 12.73 8.32 -92.71 -0.77 11.96 16 38 H 0.03 1.71 7.62 -2.39 -0.02 1.69 16 39 H 0.14 6.32 5.19 -2.39 -0.01 6.30 16 40 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 41 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 42 H 0.19 3.65 8.06 -2.91 -0.02 3.63 16 43 H 0.13 6.00 7.06 -2.91 -0.02 5.98 16 Total: -1.00 -61.75 362.95 4.73 -57.02 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: 0.99 Total: 28.91 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 6.54 Total: 12.37 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -3.78 Total: -91.87 kcal Atomic # 8 Polarization: -46.52 SS G_CDS: -1.05 Total: -47.57 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.14 kcal Total: -61.75 4.73 -57.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604529928.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.601 kcal (2) G-P(sol) polarization free energy of solvation -61.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds