Wall clock time and date at job start Tue Mar 31 2020 08:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34772 * 117.00038 * 2 1 4 4 O 1.21526 * 119.99843 * 359.97438 * 3 2 1 5 5 C 1.47284 * 120.00338 * 179.97438 * 3 2 1 6 6 C 1.39792 * 120.21240 * 354.32483 * 5 3 2 7 7 C 1.37740 * 119.92074 * 180.02562 * 6 5 3 8 8 C 1.38640 * 120.37009 * 359.97438 * 7 6 5 9 9 C 1.37937 * 120.44254 * 0.02562 * 8 7 6 10 10 C 1.39000 * 120.06446 * 0.02562 * 9 8 7 11 11 N 1.38791 * 120.18252 * 180.02562 * 10 9 8 12 12 N 1.40097 * 120.00043 * 5.42679 * 11 10 9 13 13 C 1.28020 * 120.00011 * 180.02562 * 12 11 10 14 14 C 1.50701 * 119.99892 * 179.97438 * 13 12 11 15 15 C 1.53007 * 109.47340 * 239.99824 * 14 13 12 16 16 C 1.52991 * 109.47445 * 0.02562 * 14 13 12 17 17 C 1.53002 * 109.47214 * 120.00275 * 14 13 12 18 18 C 1.50697 * 109.47728 * 179.97438 * 17 14 13 19 19 H 1.08004 * 119.99159 * 359.97438 * 18 17 14 20 20 C 1.37872 * 120.00273 * 179.97438 * 18 17 14 21 21 N 1.31504 * 120.00212 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00052 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46936 * 90.00084 * 22 20 18 24 24 H 1.48497 * 109.47343 * 210.00662 * 22 20 18 25 25 H 1.48500 * 109.47106 * 330.00872 * 22 20 18 26 26 H 1.08998 * 109.47712 * 300.00293 * 1 2 3 27 27 H 1.09005 * 109.47356 * 60.00746 * 1 2 3 28 28 H 1.09005 * 109.47263 * 180.02562 * 1 2 3 29 29 H 1.07994 * 120.04151 * 0.02562 * 6 5 3 30 30 H 1.08001 * 119.80842 * 179.72178 * 7 6 5 31 31 H 1.08004 * 119.77560 * 179.97438 * 8 7 6 32 32 H 1.08001 * 119.96286 * 179.97438 * 9 8 7 33 33 H 0.96999 * 119.99770 * 185.42724 * 11 10 9 34 34 H 1.08003 * 120.00418 * 0.02562 * 13 12 11 35 35 H 1.08998 * 109.46519 * 59.99825 * 15 14 13 36 36 H 1.08996 * 109.47387 * 180.02562 * 15 14 13 37 37 H 1.09004 * 109.46705 * 300.00460 * 15 14 13 38 38 H 1.09003 * 109.47122 * 59.99676 * 16 14 13 39 39 H 1.09001 * 109.47705 * 179.97438 * 16 14 13 40 40 H 1.09005 * 109.47190 * 299.99636 * 16 14 13 41 41 H 1.09003 * 109.46704 * 299.99927 * 17 14 13 42 42 H 1.09004 * 109.47278 * 59.99266 * 17 14 13 43 43 H 0.97006 * 120.00839 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2200 -0.0005 5 6 3.5346 1.2780 0.0006 6 6 4.3000 0.1144 0.1206 7 6 5.6752 0.1936 0.1209 8 6 6.3066 1.4221 0.0023 9 6 5.5661 2.5798 -0.1170 10 6 4.1774 2.5212 -0.1184 11 7 3.4300 3.6844 -0.2388 12 7 4.0711 4.9078 -0.4732 13 6 3.3817 5.9809 -0.5838 14 6 4.0714 7.2970 -0.8354 15 6 3.7588 8.2636 0.3087 16 6 5.5827 7.0735 -0.9164 17 6 3.5726 7.8901 -2.1547 18 6 4.2618 9.2065 -2.4061 19 1 4.9831 9.5826 -1.6957 20 6 3.9715 9.9306 -3.5429 21 7 3.0929 9.4728 -4.4077 22 14 4.8253 11.5627 -3.8542 23 1 6.0747 11.3291 -4.6221 24 1 3.9252 12.4519 -4.6316 25 1 5.1548 12.2044 -2.5562 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 3.8138 -0.8455 0.2129 30 1 6.2647 -0.7061 0.2183 31 1 7.3854 1.4731 0.0041 32 1 6.0660 3.5328 -0.2085 33 1 2.4637 3.6503 -0.1606 34 1 2.3059 5.9432 -0.4959 35 1 4.1141 7.8410 1.2485 36 1 4.2573 9.2156 0.1265 37 1 2.6820 8.4227 0.3659 38 1 5.8050 6.3851 -1.7318 39 1 6.0816 8.0254 -1.0989 40 1 5.9384 6.6508 0.0232 41 1 3.7953 7.2015 -2.9698 42 1 2.4958 8.0492 -2.0975 43 1 2.8883 9.9823 -5.2073 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776187484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:46 Heat of formation + Delta-G solvation = -40.835890 kcal Electronic energy + Delta-G solvation = -24237.401081 eV Core-core repulsion = 20668.822292 eV Total energy + Delta-G solvation = -3568.578789 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.87258 -40.07659 -39.15207 -37.75634 -36.92746 -34.59208 -33.16521 -32.46900 -29.69084 -28.94843 -28.45792 -27.91970 -25.82742 -25.02891 -24.05304 -22.33541 -22.21956 -19.63859 -19.07253 -18.44957 -18.34457 -17.94287 -17.79553 -17.49513 -16.55123 -15.86458 -15.60067 -15.32067 -15.26914 -14.88990 -14.76828 -14.54516 -14.38762 -14.25243 -13.97579 -13.27045 -13.24128 -12.94926 -12.87991 -12.73779 -12.68104 -12.58894 -12.31986 -12.29987 -12.06993 -11.92946 -11.84260 -11.59639 -11.30982 -11.10909 -10.78630 -10.66452 -10.49845 -10.07719 -8.57561 -8.12668 -6.20609 -0.31923 0.41606 1.29544 1.41073 1.45483 1.45665 1.56297 1.61310 1.67231 2.46740 2.86497 3.22132 3.63648 3.76633 3.85381 3.91915 4.16020 4.23983 4.27030 4.34275 4.37787 4.40884 4.44890 4.53644 4.65718 4.77375 4.92554 5.00738 5.06114 5.12382 5.16747 5.18264 5.37389 5.37916 5.43351 5.48765 5.54363 5.55853 5.60555 5.78961 5.85972 5.89623 6.21464 6.30230 6.55991 6.93302 7.20746 7.47114 8.99808 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.019291 B = 0.002996 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.113653 B = 9344.598511 C =10120.667751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.518 3.482 4 O -0.556 6.556 5 C -0.235 4.235 6 C -0.015 4.015 7 C -0.179 4.179 8 C -0.031 4.031 9 C -0.200 4.200 10 C 0.266 3.734 11 N -0.590 5.590 12 N -0.266 5.266 13 C 0.094 3.906 14 C -0.006 4.006 15 C -0.117 4.117 16 C -0.108 4.108 17 C 0.047 3.953 18 C -0.513 4.513 19 H 0.075 0.925 20 C -0.003 4.003 21 N -0.939 5.939 22 Si 0.959 3.041 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.257 1.257 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.140 0.860 29 H 0.161 0.839 30 H 0.166 0.834 31 H 0.160 0.840 32 H 0.130 0.870 33 H 0.399 0.601 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.035 0.965 39 H 0.058 0.942 40 H 0.059 0.941 41 H -0.018 1.018 42 H -0.006 1.006 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.243 -21.334 12.197 24.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.263 6.263 3 C 0.368 3.632 4 O -0.449 6.449 5 C -0.242 4.242 6 C -0.034 4.034 7 C -0.198 4.198 8 C -0.050 4.050 9 C -0.222 4.222 10 C 0.160 3.840 11 N -0.318 5.318 12 N -0.068 5.068 13 C -0.121 4.121 14 C -0.009 4.009 15 C -0.176 4.176 16 C -0.165 4.165 17 C 0.009 3.991 18 C -0.551 4.551 19 H 0.093 0.907 20 C -0.200 4.200 21 N -0.580 5.580 22 Si 0.784 3.216 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.181 1.181 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.158 0.842 29 H 0.178 0.822 30 H 0.183 0.817 31 H 0.178 0.822 32 H 0.148 0.852 33 H 0.249 0.751 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.000 1.000 42 H 0.013 0.987 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.792 -21.423 12.047 24.736 hybrid contribution -1.798 1.364 -0.775 2.386 sum 0.994 -20.059 11.272 23.031 Atomic orbital electron populations 1.23609 0.74309 1.06106 1.02445 1.86531 1.25144 1.30805 1.83826 1.21336 0.89201 0.81503 0.71148 1.90486 1.67394 1.36703 1.50320 1.18658 0.88719 0.93916 1.22879 1.21466 0.94349 0.96374 0.91177 1.21363 0.93861 0.98961 1.05650 1.21646 1.01562 0.91082 0.90720 1.20928 0.90673 1.01095 1.09465 1.17912 0.92169 0.83132 0.90789 1.46590 1.09347 1.02426 1.73449 1.73852 1.27680 0.91831 1.13456 1.26284 0.97855 0.93476 0.94466 1.19575 0.95813 0.88114 0.97370 1.21655 1.01493 0.98842 0.95579 1.21499 0.93555 1.00914 1.00549 1.18956 0.95011 0.94725 0.90416 1.21569 1.23198 1.04523 1.05810 0.90650 1.25923 0.96033 1.01819 0.96209 1.70116 1.35356 1.40422 1.12129 0.85531 0.78065 0.79302 0.78686 1.20282 1.21539 1.18118 0.91895 0.92421 0.84160 0.82161 0.81661 0.82249 0.85245 0.75130 0.88102 0.92032 0.91364 0.93078 0.94627 0.92290 0.92250 0.99987 0.98720 0.93160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.57 113.37 1.20 1.63 16 2 O -0.35 -7.40 9.83 -56.83 -0.56 -7.96 16 3 C 0.52 14.34 7.87 70.20 0.55 14.90 16 4 O -0.56 -18.45 13.44 19.75 0.27 -18.18 16 5 C -0.23 -6.21 5.89 -19.98 -0.12 -6.32 16 6 C -0.02 -0.28 9.61 22.53 0.22 -0.06 16 7 C -0.18 -2.70 10.02 22.25 0.22 -2.48 16 8 C -0.03 -0.57 10.03 22.29 0.22 -0.35 16 9 C -0.20 -5.35 9.49 22.38 0.21 -5.14 16 10 C 0.27 8.23 6.72 38.76 0.26 8.49 16 11 N -0.59 -21.08 6.29 -50.90 -0.32 -21.40 16 12 N -0.27 -9.98 8.99 -50.46 -0.45 -10.43 16 13 C 0.09 3.61 9.56 88.66 0.85 4.45 16 14 C -0.01 -0.25 0.75 -52.93 -0.04 -0.28 16 15 C -0.12 -4.16 8.20 71.98 0.59 -3.57 16 16 C -0.11 -4.11 7.45 71.98 0.54 -3.57 16 17 C 0.05 2.43 4.02 29.85 0.12 2.55 16 18 C -0.51 -27.56 7.65 25.60 0.20 -27.37 16 19 H 0.08 3.78 5.68 -2.91 -0.02 3.77 16 20 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 21 N -0.94 -57.07 13.28 21.44 0.28 -56.78 16 22 Si 0.96 43.56 29.54 68.60 2.03 45.58 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 24 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 25 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.14 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.16 2.08 7.62 -2.91 -0.02 2.06 16 30 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 31 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 32 H 0.13 3.78 7.36 -2.91 -0.02 3.76 16 33 H 0.40 14.66 5.15 -215.17 -1.11 13.55 16 34 H 0.10 3.77 8.00 -2.91 -0.02 3.74 16 35 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 2.50 6.61 -2.39 -0.02 2.49 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.03 1.43 8.06 -2.39 -0.02 1.41 16 39 H 0.06 2.28 6.62 -2.39 -0.02 2.27 16 40 H 0.06 1.98 8.06 -2.38 -0.02 1.96 16 41 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 42 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 43 H 0.26 14.98 8.31 -92.70 -0.77 14.21 16 Total: -1.00 -69.50 360.58 6.63 -62.86 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -0.09 Total: 23.15 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 5.48 Total: -16.84 kcal Atomic # 7 Polarization: -88.13 SS G_CDS: -0.49 Total: -88.62 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.29 Total: -26.14 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -69.50 6.63 -62.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776187484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.028 kcal (2) G-P(sol) polarization free energy of solvation -69.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds