Wall clock time and date at job start Tue Mar 31 2020 08:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47009 * 2 1 4 4 C 1.52997 * 109.47290 * 239.99733 * 2 1 3 5 5 C 1.50704 * 109.46861 * 119.99627 * 2 1 3 6 6 O 1.21276 * 120.00117 * 359.97438 * 5 2 1 7 7 N 1.34770 * 119.99629 * 180.02562 * 5 2 1 8 8 N 1.40108 * 120.00003 * 180.02562 * 7 5 2 9 9 C 1.34773 * 120.00399 * 180.02562 * 8 7 5 10 10 O 1.21282 * 119.99503 * 359.97438 * 9 8 7 11 11 C 1.50694 * 120.00092 * 179.97438 * 9 8 7 12 12 C 1.50707 * 109.47262 * 179.97438 * 11 9 8 13 13 C 1.37643 * 120.12639 * 265.30991 * 12 11 9 14 14 C 1.38615 * 120.24281 * 180.31829 * 13 12 11 15 15 C 1.38658 * 120.50051 * 359.66907 * 14 13 12 16 16 C 1.37593 * 120.25264 * 0.02562 * 15 14 13 17 17 C 1.40688 * 120.12508 * 84.99750 * 12 11 9 18 18 C 1.41401 * 120.24844 * 359.97438 * 17 12 11 19 19 H 1.07999 * 119.99289 * 334.28466 * 18 17 12 20 20 C 1.39937 * 120.00394 * 154.28925 * 18 17 12 21 21 N 1.30829 * 120.00181 * 334.60180 * 20 18 17 22 22 Si 1.86801 * 120.00083 * 154.60226 * 20 18 17 23 23 H 1.48505 * 109.47160 * 179.97438 * 22 20 18 24 24 H 1.48495 * 109.47100 * 300.00105 * 22 20 18 25 25 H 1.48502 * 109.47051 * 60.00179 * 22 20 18 26 26 H 1.09003 * 109.47571 * 300.00433 * 1 2 3 27 27 H 1.09009 * 109.47241 * 60.00245 * 1 2 3 28 28 H 1.08992 * 109.47355 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47024 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47146 * 299.99461 * 3 2 1 31 31 H 1.08998 * 109.47583 * 59.99807 * 3 2 1 32 32 H 1.09003 * 109.46889 * 299.99900 * 4 2 1 33 33 H 1.08999 * 109.46843 * 59.99807 * 4 2 1 34 34 H 1.08995 * 109.47045 * 180.02562 * 4 2 1 35 35 H 0.97000 * 120.00424 * 359.97438 * 7 5 2 36 36 H 0.97000 * 119.99572 * 359.97438 * 8 7 5 37 37 H 1.09001 * 109.46892 * 59.99768 * 11 9 8 38 38 H 1.08991 * 109.47294 * 299.99778 * 11 9 8 39 39 H 1.07998 * 119.87840 * 0.02562 * 13 12 11 40 40 H 1.07996 * 119.74749 * 179.68975 * 14 13 12 41 41 H 1.08000 * 119.87393 * 180.02562 * 15 14 13 42 42 H 1.07996 * 120.12941 * 180.02562 * 16 15 14 43 43 H 0.96998 * 119.99709 * 354.17607 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7104 1.2306 6 8 1.2441 -1.1708 2.0291 7 7 3.3573 -0.8330 1.4441 8 7 3.8243 -1.4939 2.5878 9 6 5.1493 -1.6161 2.8017 10 8 5.9374 -1.1544 2.0038 11 6 5.6516 -2.3264 4.0322 12 6 7.1587 -2.3259 4.0326 13 6 7.8500 -3.4019 3.5237 14 6 9.2361 -3.4068 3.5289 15 6 9.9418 -2.3278 4.0391 16 6 9.2716 -1.2389 4.5472 17 6 7.8643 -1.2229 4.5470 18 6 7.1648 -0.1089 5.0659 19 1 6.1655 0.1101 4.7197 20 6 7.7672 0.7097 6.0278 21 7 8.7046 0.2275 6.8027 22 14 7.2331 2.4909 6.2053 23 1 8.0183 3.1376 7.2872 24 1 7.4678 3.2078 4.9263 25 1 5.7882 2.5429 6.5441 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6767 -1.7490 -1.2491 33 1 1.6766 -0.2075 -2.1391 34 1 3.1299 -0.7217 -1.2489 35 1 3.9876 -0.4644 0.8056 36 1 3.1939 -1.8628 3.2261 37 1 5.2890 -3.3543 4.0317 38 1 5.2876 -1.8131 4.9220 39 1 7.3105 -4.2474 3.1232 40 1 9.7704 -4.2574 3.1321 41 1 11.0217 -2.3422 4.0377 42 1 9.8232 -0.3994 4.9437 43 1 8.9232 -0.7169 6.7693 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776970210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:02 Heat of formation + Delta-G solvation = -46.803667 kcal Electronic energy + Delta-G solvation = -24789.482718 eV Core-core repulsion = 21220.645146 eV Total energy + Delta-G solvation = -3568.837571 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.52623 -39.13342 -37.58708 -35.92127 -35.08430 -33.87931 -32.16514 -30.70677 -29.24395 -27.66251 -27.44241 -26.74918 -24.94584 -23.32908 -21.38041 -20.96805 -20.25277 -19.15664 -17.80370 -17.62402 -17.11724 -15.88379 -15.60369 -15.07381 -14.93264 -14.77930 -14.22951 -14.15031 -14.11180 -13.80078 -13.43043 -13.38524 -12.67979 -12.53225 -12.37255 -12.26479 -12.06092 -11.99806 -11.80221 -11.47848 -11.26987 -11.24822 -11.23747 -10.94305 -10.88535 -10.49904 -10.40254 -10.04859 -9.69677 -9.51050 -9.40554 -8.98112 -8.16735 -7.59758 -7.54068 -7.15296 -4.45601 1.96473 2.38817 2.78340 2.84631 3.13146 3.15085 3.27726 3.36034 4.00521 4.01323 4.42144 4.52741 4.55342 4.60776 4.90307 5.25625 5.27597 5.31658 5.42393 5.51333 5.57840 5.58471 5.62231 5.79591 5.82656 5.91267 5.92764 6.01343 6.13976 6.27192 6.32826 6.63205 6.84303 6.87942 6.97243 7.17457 7.38941 7.63538 7.75568 7.80150 7.82452 7.92714 8.01932 8.17809 8.31414 8.68152 8.75097 8.89350 10.04904 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.014496 B = 0.004066 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.079747 B = 6885.063908 C = 8128.615625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.075 4.075 3 C -0.146 4.146 4 C -0.145 4.145 5 C 0.518 3.482 6 O -0.545 6.545 7 N -0.519 5.519 8 N -0.540 5.540 9 C 0.516 3.484 10 O -0.521 6.521 11 C -0.058 4.058 12 C -0.189 4.189 13 C -0.065 4.065 14 C -0.253 4.253 15 C -0.084 4.084 16 C -0.215 4.215 17 C 0.118 3.882 18 C -0.517 4.517 19 H 0.072 0.928 20 C 0.041 3.959 21 N -0.796 5.796 22 Si 1.060 2.940 23 H -0.273 1.273 24 H -0.275 1.275 25 H -0.276 1.276 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.429 0.571 36 H 0.427 0.573 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.509 0.410 -10.321 16.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.079 4.079 3 C -0.203 4.203 4 C -0.202 4.202 5 C 0.304 3.696 6 O -0.421 6.421 7 N -0.265 5.265 8 N -0.291 5.291 9 C 0.304 3.696 10 O -0.393 6.393 11 C -0.099 4.099 12 C -0.191 4.191 13 C -0.084 4.084 14 C -0.273 4.273 15 C -0.103 4.103 16 C -0.235 4.235 17 C 0.115 3.885 18 C -0.545 4.545 19 H 0.090 0.910 20 C -0.181 4.181 21 N -0.419 5.419 22 Si 0.883 3.117 23 H -0.198 1.198 24 H -0.201 1.201 25 H -0.202 1.202 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.271 0.729 36 H 0.268 0.732 37 H 0.101 0.899 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.123 0.877 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.096 1.803 -9.457 15.460 hybrid contribution -0.214 -1.455 -0.915 1.732 sum -12.310 0.348 -10.372 16.101 Atomic orbital electron populations 1.21670 0.91414 1.03015 1.02297 1.20758 0.98193 0.96404 0.92575 1.21944 1.01675 0.93448 1.03273 1.21933 1.01576 1.00732 0.95983 1.20829 0.80404 0.80269 0.88099 1.90696 1.54856 1.49468 1.47130 1.44943 1.07002 1.56259 1.18272 1.45456 1.07652 1.58262 1.17707 1.21765 0.79055 0.79872 0.88895 1.90697 1.54470 1.47485 1.46628 1.20186 0.95913 0.99396 0.94422 1.18926 0.90858 0.96321 1.13031 1.20370 0.94037 0.96456 0.97513 1.20266 0.93716 1.00118 1.13171 1.20621 0.97345 0.94394 0.97919 1.21147 0.94458 0.98890 1.08968 1.17383 0.91474 0.90546 0.89130 1.20458 1.03291 1.09332 1.21382 0.90987 1.26926 0.92890 1.06387 0.91887 1.70455 1.23149 1.18996 1.29317 0.83715 0.76857 0.73519 0.77572 1.19801 1.20058 1.20200 0.91726 0.91713 0.91796 0.91784 0.90936 0.91674 0.91812 0.90931 0.91864 0.72908 0.73182 0.89908 0.88012 0.89484 0.89376 0.89318 0.87698 0.88663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 7.76 37.16 0.29 -0.82 16 2 C -0.07 -0.71 0.87 -155.66 -0.14 -0.84 16 3 C -0.15 -1.21 8.37 37.16 0.31 -0.90 16 4 C -0.14 -1.13 8.37 37.16 0.31 -0.82 16 5 C 0.52 6.88 6.60 -10.99 -0.07 6.80 16 6 O -0.55 -8.80 15.82 5.56 0.09 -8.71 16 7 N -0.52 -7.37 6.04 31.22 0.19 -7.19 16 8 N -0.54 -8.54 6.26 31.22 0.20 -8.35 16 9 C 0.52 9.85 7.58 -10.99 -0.08 9.76 16 10 O -0.52 -11.85 15.87 5.56 0.09 -11.76 16 11 C -0.06 -1.10 5.18 -29.03 -0.15 -1.25 16 12 C -0.19 -4.41 4.43 -103.91 -0.46 -4.87 16 13 C -0.07 -1.46 9.66 -39.66 -0.38 -1.84 16 14 C -0.25 -5.71 10.05 -39.29 -0.39 -6.10 16 15 C -0.08 -1.98 10.02 -39.66 -0.40 -2.38 16 16 C -0.22 -5.56 7.95 -38.87 -0.31 -5.87 16 17 C 0.12 3.05 5.30 -106.82 -0.57 2.48 16 18 C -0.52 -13.37 8.08 -37.74 -0.30 -13.67 16 19 H 0.07 1.83 6.73 -52.49 -0.35 1.48 16 20 C 0.04 1.03 4.94 -17.34 -0.09 0.95 16 21 N -0.80 -20.83 12.31 55.55 0.68 -20.15 16 22 Si 1.06 21.78 30.00 -169.99 -5.10 16.68 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 26 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 27 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 29 H 0.06 0.55 7.56 -51.93 -0.39 0.15 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.50 7.56 -51.93 -0.39 0.11 16 35 H 0.43 5.82 6.84 -182.59 -1.25 4.57 16 36 H 0.43 6.10 8.00 -182.59 -1.46 4.64 16 37 H 0.08 1.30 8.05 -51.93 -0.42 0.88 16 38 H 0.10 1.91 7.06 -51.93 -0.37 1.55 16 39 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 40 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.11 2.79 6.49 -52.49 -0.34 2.45 16 43 H 0.30 8.02 6.68 -40.82 -0.27 7.75 16 LS Contribution 358.86 15.07 5.41 5.41 Total: -1.00 -31.33 358.86 -9.15 -40.48 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -8.27 Total: 12.97 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -2.43 Total: -19.38 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 1.07 Total: -35.68 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: 0.18 Total: -20.47 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.10 Total: 16.68 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.33 -9.15 -40.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776970210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.327 kcal (2) G-P(sol) polarization free energy of solvation -31.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds