Wall clock time and date at job start Tue Mar 31 2020 08:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47009 * 2 1 4 4 C 1.52997 * 109.47290 * 239.99733 * 2 1 3 5 5 C 1.50704 * 109.46861 * 119.99627 * 2 1 3 6 6 O 1.21276 * 120.00117 * 359.97438 * 5 2 1 7 7 N 1.34770 * 119.99629 * 180.02562 * 5 2 1 8 8 N 1.40108 * 120.00003 * 180.02562 * 7 5 2 9 9 C 1.34773 * 120.00399 * 180.02562 * 8 7 5 10 10 O 1.21282 * 119.99503 * 359.97438 * 9 8 7 11 11 C 1.50694 * 120.00092 * 179.97438 * 9 8 7 12 12 C 1.50707 * 109.47262 * 179.97438 * 11 9 8 13 13 C 1.37643 * 120.12639 * 265.30991 * 12 11 9 14 14 C 1.38615 * 120.24281 * 180.31829 * 13 12 11 15 15 C 1.38658 * 120.50051 * 359.66907 * 14 13 12 16 16 C 1.37593 * 120.25264 * 0.02562 * 15 14 13 17 17 C 1.40688 * 120.12508 * 84.99750 * 12 11 9 18 18 C 1.41401 * 120.24844 * 359.97438 * 17 12 11 19 19 H 1.07999 * 119.99289 * 334.28466 * 18 17 12 20 20 C 1.39937 * 120.00394 * 154.28925 * 18 17 12 21 21 N 1.30829 * 120.00181 * 334.60180 * 20 18 17 22 22 Si 1.86801 * 120.00083 * 154.60226 * 20 18 17 23 23 H 1.48505 * 109.47160 * 179.97438 * 22 20 18 24 24 H 1.48495 * 109.47100 * 300.00105 * 22 20 18 25 25 H 1.48502 * 109.47051 * 60.00179 * 22 20 18 26 26 H 1.09003 * 109.47571 * 300.00433 * 1 2 3 27 27 H 1.09009 * 109.47241 * 60.00245 * 1 2 3 28 28 H 1.08992 * 109.47355 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47024 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.47146 * 299.99461 * 3 2 1 31 31 H 1.08998 * 109.47583 * 59.99807 * 3 2 1 32 32 H 1.09003 * 109.46889 * 299.99900 * 4 2 1 33 33 H 1.08999 * 109.46843 * 59.99807 * 4 2 1 34 34 H 1.08995 * 109.47045 * 180.02562 * 4 2 1 35 35 H 0.97000 * 120.00424 * 359.97438 * 7 5 2 36 36 H 0.97000 * 119.99572 * 359.97438 * 8 7 5 37 37 H 1.09001 * 109.46892 * 59.99768 * 11 9 8 38 38 H 1.08991 * 109.47294 * 299.99778 * 11 9 8 39 39 H 1.07998 * 119.87840 * 0.02562 * 13 12 11 40 40 H 1.07996 * 119.74749 * 179.68975 * 14 13 12 41 41 H 1.08000 * 119.87393 * 180.02562 * 15 14 13 42 42 H 1.07996 * 120.12941 * 180.02562 * 16 15 14 43 43 H 0.96998 * 119.99709 * 354.17607 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7104 1.2306 6 8 1.2441 -1.1708 2.0291 7 7 3.3573 -0.8330 1.4441 8 7 3.8243 -1.4939 2.5878 9 6 5.1493 -1.6161 2.8017 10 8 5.9374 -1.1544 2.0038 11 6 5.6516 -2.3264 4.0322 12 6 7.1587 -2.3259 4.0326 13 6 7.8500 -3.4019 3.5237 14 6 9.2361 -3.4068 3.5289 15 6 9.9418 -2.3278 4.0391 16 6 9.2716 -1.2389 4.5472 17 6 7.8643 -1.2229 4.5470 18 6 7.1648 -0.1089 5.0659 19 1 6.1655 0.1101 4.7197 20 6 7.7672 0.7097 6.0278 21 7 8.7046 0.2275 6.8027 22 14 7.2331 2.4909 6.2053 23 1 8.0183 3.1376 7.2872 24 1 7.4678 3.2078 4.9263 25 1 5.7882 2.5429 6.5441 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6767 -1.7490 -1.2491 33 1 1.6766 -0.2075 -2.1391 34 1 3.1299 -0.7217 -1.2489 35 1 3.9876 -0.4644 0.8056 36 1 3.1939 -1.8628 3.2261 37 1 5.2890 -3.3543 4.0317 38 1 5.2876 -1.8131 4.9220 39 1 7.3105 -4.2474 3.1232 40 1 9.7704 -4.2574 3.1321 41 1 11.0217 -2.3422 4.0377 42 1 9.8232 -0.3994 4.9437 43 1 8.9232 -0.7169 6.7693 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776970210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:01 Heat of formation + Delta-G solvation = -65.968089 kcal Electronic energy + Delta-G solvation = -24790.313749 eV Core-core repulsion = 21220.645146 eV Total energy + Delta-G solvation = -3569.668603 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.70315 -40.58951 -39.31474 -36.82812 -36.39688 -35.74558 -33.79321 -32.09785 -31.10511 -28.55682 -28.28710 -27.97236 -26.79764 -24.38836 -22.86058 -22.79366 -21.76043 -20.44057 -19.57450 -18.96369 -18.24663 -17.10899 -16.95961 -16.76946 -16.32906 -16.07352 -15.80679 -15.64191 -15.29830 -14.95180 -14.85026 -14.53958 -14.22126 -13.87680 -13.57647 -13.40328 -13.13342 -13.01592 -12.96031 -12.94584 -12.66788 -12.63241 -12.37766 -12.24998 -12.00033 -11.96856 -11.93509 -11.50777 -11.29918 -11.23270 -10.90812 -10.83994 -9.46695 -9.45204 -9.43890 -9.06721 -6.40862 0.65789 0.98839 1.07208 1.24444 1.46800 1.61424 1.71294 1.75100 2.30354 2.69740 2.95481 3.41147 3.63245 3.75169 3.84979 3.96271 4.15966 4.26885 4.31162 4.47848 4.55842 4.67113 4.67720 4.69190 4.78819 4.89850 4.92085 4.94214 4.96743 5.07858 5.18268 5.27920 5.31582 5.32530 5.48988 5.57918 5.67141 5.81193 5.84110 5.97691 6.05747 6.28772 6.43791 6.47831 6.82296 6.85022 7.01121 7.32018 8.08379 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.014496 B = 0.004066 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.079747 B = 6885.063908 C = 8128.615625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.069 4.069 3 C -0.145 4.145 4 C -0.143 4.143 5 C 0.517 3.483 6 O -0.575 6.575 7 N -0.520 5.520 8 N -0.530 5.530 9 C 0.522 3.478 10 O -0.563 6.563 11 C -0.059 4.059 12 C -0.192 4.192 13 C -0.076 4.076 14 C -0.250 4.250 15 C -0.094 4.094 16 C -0.244 4.244 17 C 0.089 3.911 18 C -0.542 4.542 19 H 0.068 0.932 20 C 0.006 3.994 21 N -0.818 5.818 22 Si 1.105 2.895 23 H -0.269 1.269 24 H -0.273 1.273 25 H -0.257 1.257 26 H 0.051 0.949 27 H 0.094 0.906 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.432 0.568 36 H 0.435 0.565 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.109 0.891 42 H 0.084 0.916 43 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.089 0.126 -12.079 18.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.073 4.073 3 C -0.203 4.203 4 C -0.200 4.200 5 C 0.305 3.695 6 O -0.453 6.453 7 N -0.267 5.267 8 N -0.279 5.279 9 C 0.310 3.690 10 O -0.439 6.439 11 C -0.100 4.100 12 C -0.194 4.194 13 C -0.094 4.094 14 C -0.269 4.269 15 C -0.113 4.113 16 C -0.264 4.264 17 C 0.086 3.914 18 C -0.570 4.570 19 H 0.086 0.914 20 C -0.210 4.210 21 N -0.442 5.442 22 Si 0.924 3.076 23 H -0.194 1.194 24 H -0.198 1.198 25 H -0.182 1.182 26 H 0.070 0.930 27 H 0.113 0.887 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.275 0.725 36 H 0.278 0.722 37 H 0.139 0.861 38 H 0.119 0.881 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.128 0.872 42 H 0.102 0.898 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.714 1.493 -11.213 17.777 hybrid contribution 0.235 -1.523 -0.465 1.609 sum -13.479 -0.029 -11.677 17.834 Atomic orbital electron populations 1.21695 0.90712 1.02692 1.03143 1.20865 0.98590 0.96737 0.91144 1.21976 1.01463 0.92621 1.04208 1.21958 1.01480 1.00617 0.95970 1.21737 0.79507 0.79475 0.88823 1.90680 1.55407 1.50750 1.48476 1.45182 1.07570 1.56282 1.17621 1.45170 1.06951 1.57418 1.18390 1.21526 0.79654 0.79441 0.88343 1.90681 1.55697 1.49440 1.48036 1.20206 0.93516 1.01809 0.94443 1.19380 0.93229 0.95568 1.11228 1.20820 0.94381 0.97206 0.96984 1.20719 0.94260 1.00350 1.11565 1.20914 0.98667 0.94137 0.97558 1.21154 0.94909 0.99481 1.10818 1.17746 0.91871 0.91716 0.90042 1.20552 1.03494 1.10592 1.22386 0.91379 1.28152 0.92262 1.09510 0.91088 1.70554 1.24845 1.18059 1.30736 0.83147 0.77589 0.69301 0.77609 1.19394 1.19807 1.18150 0.93014 0.88725 0.92720 0.92174 0.88169 0.92613 0.92253 0.88273 0.92070 0.72507 0.72200 0.86064 0.88105 0.86083 0.86273 0.87249 0.89828 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.93 7.76 71.98 0.56 -1.37 16 2 C -0.07 -1.17 0.87 -52.93 -0.05 -1.21 16 3 C -0.15 -2.10 8.37 71.98 0.60 -1.49 16 4 C -0.14 -1.87 8.37 71.98 0.60 -1.27 16 5 C 0.52 13.16 6.60 87.66 0.58 13.74 16 6 O -0.58 -18.17 15.82 -3.02 -0.05 -18.22 16 7 N -0.52 -14.30 6.04 -173.54 -1.05 -15.35 16 8 N -0.53 -16.27 6.26 -173.54 -1.09 -17.35 16 9 C 0.52 19.52 7.58 87.66 0.66 20.19 16 10 O -0.56 -25.53 15.87 -3.04 -0.05 -25.58 16 11 C -0.06 -2.17 5.18 29.10 0.15 -2.02 16 12 C -0.19 -8.85 4.43 -19.40 -0.09 -8.94 16 13 C -0.08 -3.23 9.66 22.22 0.21 -3.02 16 14 C -0.25 -10.78 10.05 22.46 0.23 -10.56 16 15 C -0.09 -4.44 10.02 22.22 0.22 -4.21 16 16 C -0.24 -13.01 7.95 22.73 0.18 -12.83 16 17 C 0.09 4.71 5.30 -21.29 -0.11 4.60 16 18 C -0.54 -28.83 8.08 23.46 0.19 -28.64 16 19 H 0.07 3.55 6.73 -2.91 -0.02 3.53 16 20 C 0.01 0.33 4.94 85.25 0.42 0.75 16 21 N -0.82 -44.47 12.31 21.82 0.27 -44.20 16 22 Si 1.11 44.49 30.00 68.60 2.06 46.55 16 23 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 24 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 25 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 26 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 27 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 29 H 0.06 0.92 7.56 -2.39 -0.02 0.91 16 30 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.84 7.56 -2.39 -0.02 0.82 16 35 H 0.43 11.39 6.84 -213.32 -1.46 9.93 16 36 H 0.44 11.95 8.00 -213.32 -1.71 10.24 16 37 H 0.12 3.47 8.05 -2.39 -0.02 3.45 16 38 H 0.10 3.76 7.06 -2.39 -0.02 3.74 16 39 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 40 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 41 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 42 H 0.08 4.70 6.49 -2.91 -0.02 4.68 16 43 H 0.28 16.04 6.68 -92.71 -0.62 15.42 16 Total: -1.00 -69.68 358.86 2.48 -67.19 By element: Atomic # 1 Polarization: 45.21 SS G_CDS: -1.98 Total: 43.23 kcal Atomic # 6 Polarization: -40.64 SS G_CDS: 4.37 Total: -36.27 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -1.87 Total: -76.90 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -0.10 Total: -43.79 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.06 Total: 46.55 kcal Total: -69.68 2.48 -67.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776970210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.225 kcal (2) G-P(sol) polarization free energy of solvation -69.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds