Wall clock time and date at job start Tue Mar 31 2020 09:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00383 * 2 1 4 4 C 1.52999 * 109.47209 * 124.99797 * 3 2 1 5 5 N 1.46502 * 109.47242 * 180.02562 * 4 3 2 6 6 O 1.41600 * 119.99793 * 105.00104 * 5 4 3 7 7 C 1.42893 * 113.99989 * 270.00347 * 6 5 4 8 8 C 1.50707 * 109.47070 * 179.97438 * 7 6 5 9 9 C 1.38238 * 119.99792 * 89.99993 * 8 7 6 10 10 C 1.38235 * 119.99712 * 179.97438 * 9 8 7 11 11 C 1.38234 * 120.00220 * 359.97124 * 10 9 8 12 12 C 1.38233 * 120.00037 * 0.28719 * 11 10 9 13 13 C 1.38234 * 120.00179 * 269.97930 * 8 7 6 14 14 C 1.34770 * 120.00022 * 285.00623 * 5 4 3 15 15 O 1.21595 * 120.00467 * 359.97438 * 14 5 4 16 16 N 1.34781 * 120.00205 * 179.97438 * 14 5 4 17 17 C 1.46493 * 120.00364 * 179.97438 * 16 14 5 18 18 C 1.50699 * 109.47186 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00192 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00043 * 180.02562 * 18 17 16 21 21 N 1.31523 * 119.99849 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00103 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47322 * 90.00075 * 22 20 18 24 24 H 1.48503 * 109.46991 * 209.99802 * 22 20 18 25 25 H 1.48496 * 109.47188 * 329.99905 * 22 20 18 26 26 H 1.07998 * 119.99810 * 359.97438 * 1 2 3 27 27 H 1.08005 * 119.99797 * 180.02562 * 1 2 3 28 28 H 1.08005 * 120.00011 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.46522 * 5.00500 * 3 2 1 30 30 H 1.08991 * 109.47269 * 245.00775 * 3 2 1 31 31 H 1.09007 * 109.46718 * 60.00327 * 4 3 2 32 32 H 1.08997 * 109.47119 * 300.00684 * 4 3 2 33 33 H 1.09005 * 109.47744 * 60.00324 * 7 6 5 34 34 H 1.09000 * 109.47353 * 299.99523 * 7 6 5 35 35 H 1.08005 * 120.00068 * 359.97438 * 9 8 7 36 36 H 1.07999 * 119.99770 * 179.97438 * 10 9 8 37 37 H 1.08002 * 119.99744 * 180.02562 * 11 10 9 38 38 H 1.07998 * 120.00395 * 179.72811 * 12 11 10 39 39 H 1.07999 * 119.99968 * 359.97438 * 13 8 7 40 40 H 0.96997 * 119.99206 * 0.02562 * 16 14 5 41 41 H 1.09003 * 109.47436 * 300.00455 * 17 16 14 42 42 H 1.09002 * 109.47029 * 60.00327 * 17 16 14 43 43 H 0.97006 * 119.99242 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 7 3.7672 2.6020 1.1820 6 8 3.4383 3.6089 2.1217 7 6 2.4371 4.5221 1.6685 8 6 2.1665 5.5444 2.7422 9 6 2.8939 6.7195 2.7767 10 6 2.6454 7.6574 3.7613 11 6 1.6692 7.4207 4.7109 12 6 0.9455 6.2433 4.6796 13 6 1.1908 5.3074 3.6923 14 6 4.7538 2.8110 0.2879 15 8 5.0365 1.9463 -0.5188 16 7 5.4270 3.9786 0.2879 17 6 6.4997 4.2056 -0.6836 18 6 7.0868 5.5774 -0.4723 19 1 6.6998 6.2161 0.3079 20 6 8.1179 6.0171 -1.2750 21 7 8.5888 5.2395 -2.2255 22 14 8.8461 7.7172 -1.0127 23 1 9.9682 7.6310 -0.0437 24 1 9.3487 8.2454 -2.3063 25 1 7.8004 8.6267 -0.4794 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3586 2.1316 0.0897 30 1 2.6212 1.4026 -0.9314 31 1 3.7400 0.5064 1.0920 32 1 2.4773 1.2355 2.1130 33 1 1.5198 3.9758 1.4482 34 1 2.7857 5.0254 0.7667 35 1 3.6563 6.9047 2.0344 36 1 3.2139 8.5753 3.7885 37 1 1.4748 8.1537 5.4799 38 1 0.1859 6.0563 5.4241 39 1 0.6221 4.3897 3.6648 40 1 5.2017 4.6683 0.9317 41 1 7.2771 3.4535 -0.5490 42 1 6.0962 4.1344 -1.6937 43 1 9.3146 5.5488 -2.7900 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787356168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:33 Heat of formation + Delta-G solvation = 15.916121 kcal Electronic energy + Delta-G solvation = -24497.849343 eV Core-core repulsion = 20931.731505 eV Total energy + Delta-G solvation = -3566.117837 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.74894 -39.20408 -37.03398 -35.74382 -34.16618 -33.01752 -32.27764 -31.37175 -31.02694 -28.81368 -26.94998 -25.87873 -23.71219 -22.71114 -22.05545 -21.44794 -20.05001 -19.87347 -18.59298 -17.08915 -16.77556 -16.09344 -15.82503 -15.36406 -15.33955 -15.05229 -14.70226 -14.41080 -13.93164 -13.91401 -13.74652 -13.44909 -13.26423 -13.04659 -12.81940 -12.43377 -12.40244 -11.96976 -11.83269 -11.32377 -11.23722 -11.16656 -10.97579 -10.95467 -10.87354 -10.42747 -10.27849 -9.56237 -9.44559 -9.36851 -9.07710 -9.04186 -8.75728 -8.59981 -7.78761 -6.15401 -4.21754 1.06118 1.28140 2.05904 2.27616 3.25185 3.31134 3.33245 3.57937 3.75197 4.10554 4.36229 4.66404 4.68765 4.81227 4.87337 4.99208 4.99965 5.12146 5.19593 5.20933 5.24789 5.30063 5.40066 5.50909 5.54999 5.56754 5.77112 5.82926 5.91926 5.96694 6.11853 6.29950 6.38026 6.46095 6.53332 6.66880 6.77042 6.84351 7.07556 7.45980 7.52328 7.54910 7.84612 8.01322 8.73477 8.86134 9.21131 9.45378 10.94865 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.008304 B = 0.005000 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3370.984264 B = 5598.785527 C = 8699.434150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 C -0.121 4.121 4 C 0.147 3.853 5 N -0.501 5.501 6 O -0.138 6.138 7 C 0.064 3.936 8 C -0.087 4.087 9 C -0.093 4.093 10 C -0.121 4.121 11 C -0.114 4.114 12 C -0.127 4.127 13 C -0.098 4.098 14 C 0.702 3.298 15 O -0.579 6.579 16 N -0.719 5.719 17 C 0.264 3.736 18 C -0.541 4.541 19 H 0.062 0.938 20 C 0.065 3.935 21 N -0.885 5.885 22 Si 0.903 3.097 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.273 1.273 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.391 0.609 41 H 0.027 0.973 42 H 0.026 0.974 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.944 -1.142 11.827 21.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.159 4.159 3 C -0.159 4.159 4 C 0.025 3.975 5 N -0.284 5.284 6 O -0.143 6.143 7 C -0.014 4.014 8 C -0.088 4.088 9 C -0.111 4.111 10 C -0.139 4.139 11 C -0.132 4.132 12 C -0.145 4.145 13 C -0.116 4.116 14 C 0.404 3.596 15 O -0.458 6.458 16 N -0.371 5.371 17 C 0.144 3.856 18 C -0.579 4.579 19 H 0.080 0.920 20 C -0.139 4.139 21 N -0.523 5.523 22 Si 0.730 3.270 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.130 0.870 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.225 0.775 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.419 -1.763 11.215 20.792 hybrid contribution 0.087 1.417 0.283 1.447 sum -17.332 -0.347 11.498 20.802 Atomic orbital electron populations 1.23810 0.95881 1.01631 1.02448 1.22873 0.95839 0.98378 0.98786 1.21331 0.98276 0.95324 1.00996 1.21433 0.94327 0.83639 0.98112 1.49540 1.36009 1.08398 1.34441 1.90725 1.58838 1.36710 1.28042 1.21932 0.92931 0.90316 0.96193 1.19477 0.97505 0.94808 0.97044 1.21251 0.98195 0.93189 0.98475 1.21197 0.98112 0.99571 0.95042 1.21212 0.96075 0.97294 0.98666 1.21112 1.00275 0.94363 0.98719 1.21050 0.97506 0.99059 0.94035 1.16116 0.79078 0.84364 0.80077 1.90925 1.69501 1.45249 1.40081 1.45787 1.37992 1.14828 1.38455 1.19049 0.83416 0.96466 0.86716 1.21198 1.18692 1.00107 1.17922 0.91973 1.24926 0.96281 0.97935 0.94750 1.69982 1.26491 1.36554 1.19247 0.86426 0.79399 0.83499 0.77651 1.20436 1.21015 1.19762 0.88814 0.88566 0.87026 0.91831 0.89204 0.89115 0.89794 0.91719 0.91142 0.85163 0.85678 0.86070 0.85999 0.85992 0.77546 0.95546 0.95597 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.85 14.32 29.02 0.42 -1.44 16 2 C -0.14 -1.47 9.52 -36.02 -0.34 -1.82 16 3 C -0.12 -1.53 5.79 -27.88 -0.16 -1.69 16 4 C 0.15 1.98 5.64 -4.04 -0.02 1.96 16 5 N -0.50 -8.41 3.02 -65.22 -0.20 -8.61 16 6 O -0.14 -2.13 10.17 -11.47 -0.12 -2.24 16 7 C 0.06 0.84 6.44 36.01 0.23 1.07 16 8 C -0.09 -1.05 5.51 -104.62 -0.58 -1.63 16 9 C -0.09 -1.14 9.70 -39.58 -0.38 -1.52 16 10 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 11 C -0.11 -1.09 10.05 -39.58 -0.40 -1.48 16 12 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 13 C -0.10 -1.03 9.70 -39.58 -0.38 -1.42 16 14 C 0.70 14.94 8.21 -86.92 -0.71 14.22 16 15 O -0.58 -14.06 15.42 5.28 0.08 -13.98 16 16 N -0.72 -16.08 5.52 -66.42 -0.37 -16.45 16 17 C 0.26 7.11 5.43 -5.20 -0.03 7.08 16 18 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 19 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 20 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 21 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 22 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H 0.09 0.82 7.84 -52.49 -0.41 0.41 16 27 H 0.10 0.75 8.06 -52.48 -0.42 0.33 16 28 H 0.11 1.09 8.06 -52.48 -0.42 0.66 16 29 H 0.06 0.75 7.40 -51.92 -0.38 0.37 16 30 H 0.09 1.40 7.34 -51.93 -0.38 1.02 16 31 H 0.09 1.28 7.90 -51.92 -0.41 0.87 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.74 7.69 -51.93 -0.40 0.34 16 34 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 35 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 36 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.39 7.99 7.39 -40.82 -0.30 7.69 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 373.80 15.07 5.63 5.63 Total: -1.00 -31.86 373.80 -9.30 -41.15 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.47 Total: 7.28 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -3.58 Total: -3.32 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.17 Total: -50.38 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.04 Total: -16.22 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.86 -9.30 -41.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787356168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.070 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds