Wall clock time and date at job start Tue Mar 31 2020 09:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00383 * 2 1 4 4 C 1.52999 * 109.47209 * 124.99797 * 3 2 1 5 5 N 1.46502 * 109.47242 * 180.02562 * 4 3 2 6 6 O 1.41600 * 119.99793 * 105.00104 * 5 4 3 7 7 C 1.42893 * 113.99989 * 270.00347 * 6 5 4 8 8 C 1.50707 * 109.47070 * 179.97438 * 7 6 5 9 9 C 1.38238 * 119.99792 * 89.99993 * 8 7 6 10 10 C 1.38235 * 119.99712 * 179.97438 * 9 8 7 11 11 C 1.38234 * 120.00220 * 359.97124 * 10 9 8 12 12 C 1.38233 * 120.00037 * 0.28719 * 11 10 9 13 13 C 1.38234 * 120.00179 * 269.97930 * 8 7 6 14 14 C 1.34770 * 120.00022 * 285.00623 * 5 4 3 15 15 O 1.21595 * 120.00467 * 359.97438 * 14 5 4 16 16 N 1.34781 * 120.00205 * 179.97438 * 14 5 4 17 17 C 1.46493 * 120.00364 * 179.97438 * 16 14 5 18 18 C 1.50699 * 109.47186 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00192 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00043 * 180.02562 * 18 17 16 21 21 N 1.31523 * 119.99849 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00103 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47322 * 90.00075 * 22 20 18 24 24 H 1.48503 * 109.46991 * 209.99802 * 22 20 18 25 25 H 1.48496 * 109.47188 * 329.99905 * 22 20 18 26 26 H 1.07998 * 119.99810 * 359.97438 * 1 2 3 27 27 H 1.08005 * 119.99797 * 180.02562 * 1 2 3 28 28 H 1.08005 * 120.00011 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.46522 * 5.00500 * 3 2 1 30 30 H 1.08991 * 109.47269 * 245.00775 * 3 2 1 31 31 H 1.09007 * 109.46718 * 60.00327 * 4 3 2 32 32 H 1.08997 * 109.47119 * 300.00684 * 4 3 2 33 33 H 1.09005 * 109.47744 * 60.00324 * 7 6 5 34 34 H 1.09000 * 109.47353 * 299.99523 * 7 6 5 35 35 H 1.08005 * 120.00068 * 359.97438 * 9 8 7 36 36 H 1.07999 * 119.99770 * 179.97438 * 10 9 8 37 37 H 1.08002 * 119.99744 * 180.02562 * 11 10 9 38 38 H 1.07998 * 120.00395 * 179.72811 * 12 11 10 39 39 H 1.07999 * 119.99968 * 359.97438 * 13 8 7 40 40 H 0.96997 * 119.99206 * 0.02562 * 16 14 5 41 41 H 1.09003 * 109.47436 * 300.00455 * 17 16 14 42 42 H 1.09002 * 109.47029 * 60.00327 * 17 16 14 43 43 H 0.97006 * 119.99242 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 7 3.7672 2.6020 1.1820 6 8 3.4383 3.6089 2.1217 7 6 2.4371 4.5221 1.6685 8 6 2.1665 5.5444 2.7422 9 6 2.8939 6.7195 2.7767 10 6 2.6454 7.6574 3.7613 11 6 1.6692 7.4207 4.7109 12 6 0.9455 6.2433 4.6796 13 6 1.1908 5.3074 3.6923 14 6 4.7538 2.8110 0.2879 15 8 5.0365 1.9463 -0.5188 16 7 5.4270 3.9786 0.2879 17 6 6.4997 4.2056 -0.6836 18 6 7.0868 5.5774 -0.4723 19 1 6.6998 6.2161 0.3079 20 6 8.1179 6.0171 -1.2750 21 7 8.5888 5.2395 -2.2255 22 14 8.8461 7.7172 -1.0127 23 1 9.9682 7.6310 -0.0437 24 1 9.3487 8.2454 -2.3063 25 1 7.8004 8.6267 -0.4794 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3586 2.1316 0.0897 30 1 2.6212 1.4026 -0.9314 31 1 3.7400 0.5064 1.0920 32 1 2.4773 1.2355 2.1130 33 1 1.5198 3.9758 1.4482 34 1 2.7857 5.0254 0.7667 35 1 3.6563 6.9047 2.0344 36 1 3.2139 8.5753 3.7885 37 1 1.4748 8.1537 5.4799 38 1 0.1859 6.0563 5.4241 39 1 0.6221 4.3897 3.6648 40 1 5.2017 4.6683 0.9317 41 1 7.2771 3.4535 -0.5490 42 1 6.0962 4.1344 -1.6937 43 1 9.3146 5.5488 -2.7900 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787356168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:33 Heat of formation + Delta-G solvation = -2.283573 kcal Electronic energy + Delta-G solvation = -24498.638541 eV Core-core repulsion = 20931.731505 eV Total energy + Delta-G solvation = -3566.907035 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.22853 -40.19085 -38.41206 -36.88802 -35.99762 -34.37452 -34.10166 -32.35750 -31.81194 -30.24488 -28.70190 -26.94158 -25.26582 -23.78494 -23.50528 -22.31491 -21.64486 -20.70976 -20.27543 -18.38755 -17.98453 -17.86503 -16.99289 -16.73825 -16.28782 -16.26521 -16.21992 -16.01290 -15.28674 -15.17454 -14.78293 -14.69599 -14.24777 -14.13875 -14.07859 -14.01548 -13.71369 -13.34690 -13.29688 -12.92302 -12.73140 -12.26906 -12.19327 -12.14033 -12.05923 -11.89706 -11.63508 -11.49759 -11.07970 -10.82550 -10.56953 -10.12257 -9.86575 -9.83945 -9.56720 -8.29522 -6.45864 0.17072 0.48557 0.85907 1.41690 1.42535 1.44939 1.55957 1.98934 2.31712 2.52150 2.90468 3.05398 3.63473 3.79832 3.83612 4.01119 4.06344 4.13901 4.20337 4.24195 4.28913 4.32118 4.47939 4.54622 4.61990 4.72270 4.83496 5.01496 5.02302 5.04703 5.09739 5.14142 5.23949 5.40594 5.45105 5.53372 5.58963 5.60320 5.62179 5.74809 5.81433 5.87532 6.06948 6.11165 6.63633 7.07601 7.23013 7.50249 8.82732 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.008304 B = 0.005000 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3370.984264 B = 5598.785527 C = 8699.434150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C -0.111 4.111 4 C 0.143 3.857 5 N -0.492 5.492 6 O -0.141 6.141 7 C 0.067 3.933 8 C -0.104 4.104 9 C -0.116 4.116 10 C -0.131 4.131 11 C -0.113 4.113 12 C -0.126 4.126 13 C -0.102 4.102 14 C 0.700 3.300 15 O -0.616 6.616 16 N -0.718 5.718 17 C 0.285 3.715 18 C -0.556 4.556 19 H 0.078 0.922 20 C 0.009 3.991 21 N -0.928 5.928 22 Si 0.983 3.017 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.256 1.256 26 H 0.100 0.900 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.116 0.884 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.140 0.860 40 H 0.401 0.599 41 H -0.011 1.011 42 H -0.009 1.009 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.205 0.171 14.350 24.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.179 4.179 3 C -0.149 4.149 4 C 0.023 3.977 5 N -0.273 5.273 6 O -0.147 6.147 7 C -0.011 4.011 8 C -0.106 4.106 9 C -0.135 4.135 10 C -0.149 4.149 11 C -0.131 4.131 12 C -0.143 4.143 13 C -0.120 4.120 14 C 0.402 3.598 15 O -0.497 6.497 16 N -0.371 5.371 17 C 0.162 3.838 18 C -0.593 4.593 19 H 0.096 0.904 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.806 3.194 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.180 1.180 26 H 0.119 0.881 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.135 0.865 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.134 0.866 36 H 0.155 0.845 37 H 0.167 0.833 38 H 0.169 0.831 39 H 0.158 0.842 40 H 0.236 0.764 41 H 0.007 0.993 42 H 0.009 0.991 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.744 -0.463 13.789 24.087 hybrid contribution 0.652 0.981 -0.432 1.255 sum -19.092 0.519 13.357 23.306 Atomic orbital electron populations 1.24036 0.95269 1.02907 0.99438 1.22761 0.96356 0.97315 1.01424 1.21172 0.97913 0.97210 0.98638 1.21736 0.94265 0.81501 1.00186 1.49335 1.35084 1.09789 1.33089 1.90711 1.59986 1.36928 1.27040 1.22011 0.92756 0.90150 0.96150 1.19462 0.98836 0.94504 0.97759 1.21310 0.98679 0.94248 0.99232 1.21423 0.98793 0.99728 0.94930 1.21591 0.95018 0.97913 0.98539 1.21503 1.00425 0.93749 0.98660 1.21306 0.96945 1.00128 0.93614 1.16199 0.79734 0.83413 0.80465 1.90892 1.70840 1.46153 1.41843 1.45438 1.37580 1.15892 1.38151 1.18492 0.83376 0.95859 0.86094 1.21528 1.19093 1.00188 1.18536 0.90398 1.26001 0.96488 1.02593 0.94040 1.70136 1.27153 1.39018 1.20328 0.85189 0.78756 0.77766 0.77724 1.19611 1.20666 1.18006 0.88145 0.86605 0.86548 0.90929 0.92987 0.90008 0.86491 0.89744 0.92914 0.86598 0.84456 0.83343 0.83072 0.84187 0.76370 0.99296 0.99065 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.85 14.32 67.78 0.97 -1.88 16 2 C -0.16 -3.18 9.52 25.65 0.24 -2.93 16 3 C -0.11 -2.80 5.79 29.85 0.17 -2.63 16 4 C 0.14 3.83 5.64 86.38 0.49 4.32 16 5 N -0.49 -16.76 3.02 -478.52 -1.44 -18.21 16 6 O -0.14 -4.31 10.17 -38.78 -0.39 -4.70 16 7 C 0.07 1.71 6.44 71.24 0.46 2.17 16 8 C -0.10 -2.42 5.51 -19.86 -0.11 -2.53 16 9 C -0.12 -2.81 9.70 22.27 0.22 -2.60 16 10 C -0.13 -2.59 10.05 22.27 0.22 -2.36 16 11 C -0.11 -1.80 10.05 22.27 0.22 -1.57 16 12 C -0.13 -1.93 10.05 22.27 0.22 -1.71 16 13 C -0.10 -1.88 9.70 22.27 0.22 -1.66 16 14 C 0.70 31.25 8.21 179.06 1.47 32.72 16 15 O -0.62 -31.80 15.42 -4.01 -0.06 -31.86 16 16 N -0.72 -33.73 5.52 -482.30 -2.66 -36.39 16 17 C 0.28 16.24 5.43 85.63 0.46 16.70 16 18 C -0.56 -31.12 9.28 25.60 0.24 -30.88 16 19 H 0.08 4.02 7.60 -2.91 -0.02 4.00 16 20 C 0.01 0.49 5.46 84.65 0.46 0.95 16 21 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 22 Si 0.98 42.84 29.54 68.60 2.03 44.87 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 24 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 25 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 26 H 0.10 1.47 7.84 -2.91 -0.02 1.45 16 27 H 0.12 1.42 8.06 -2.91 -0.02 1.39 16 28 H 0.12 2.18 8.06 -2.91 -0.02 2.15 16 29 H 0.07 1.66 7.40 -2.38 -0.02 1.64 16 30 H 0.05 1.71 7.34 -2.39 -0.02 1.70 16 31 H 0.08 2.35 7.90 -2.38 -0.02 2.33 16 32 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.08 1.80 7.69 -2.38 -0.02 1.78 16 34 H 0.05 1.53 8.09 -2.39 -0.02 1.51 16 35 H 0.12 3.01 8.06 -2.91 -0.02 2.98 16 36 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 37 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 39 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 40 H 0.40 17.00 7.39 -92.71 -0.69 16.32 16 41 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 42 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 43 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -72.14 373.80 4.02 -68.12 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.31 Total: 28.12 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 5.96 Total: 6.11 kcal Atomic # 7 Polarization: -106.83 SS G_CDS: -3.82 Total: -110.65 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -0.46 Total: -36.57 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -72.14 4.02 -68.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787356168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.839 kcal (2) G-P(sol) polarization free energy of solvation -72.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds