Wall clock time and date at job start Tue Mar 31 2020 08:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47043 * 2 1 4 4 C 1.53008 * 109.46920 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46905 * 55.00046 * 4 3 2 6 6 N 1.46499 * 109.47049 * 294.99767 * 4 3 2 7 7 C 1.34774 * 119.99752 * 155.00320 * 6 4 3 8 8 O 1.21286 * 120.00075 * 359.97438 * 7 6 4 9 9 C 1.50704 * 120.00083 * 179.97438 * 7 6 4 10 10 C 1.50694 * 109.47262 * 179.97438 * 9 7 6 11 11 C 1.37639 * 120.12721 * 265.00053 * 10 9 7 12 12 C 1.38617 * 120.24745 * 180.29647 * 11 10 9 13 13 C 1.38655 * 120.49962 * 359.44345 * 12 11 10 14 14 C 1.37591 * 120.24882 * 0.56113 * 13 12 11 15 15 C 1.40696 * 120.12850 * 85.02157 * 10 9 7 16 16 C 1.41390 * 120.24641 * 359.95825 * 15 10 9 17 17 H 1.08004 * 119.99865 * 334.08674 * 16 15 10 18 18 C 1.39940 * 120.00399 * 154.09052 * 16 15 10 19 19 N 1.30822 * 119.99912 * 343.61139 * 18 16 15 20 20 Si 1.86803 * 120.00192 * 163.62242 * 18 16 15 21 21 H 1.48494 * 109.47516 * 89.99468 * 20 18 16 22 22 H 1.48504 * 109.46852 * 209.99866 * 20 18 16 23 23 H 1.48504 * 109.47021 * 329.99095 * 20 18 16 24 24 C 1.50702 * 109.46797 * 174.99552 * 4 3 2 25 25 N 1.34774 * 120.00311 * 300.00162 * 24 4 3 26 26 O 1.21287 * 119.99841 * 120.00180 * 24 4 3 27 27 H 1.08997 * 109.47633 * 300.00735 * 1 2 3 28 28 H 1.09000 * 109.47083 * 60.00608 * 1 2 3 29 29 H 1.09010 * 109.47217 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47633 * 239.99265 * 2 1 3 31 31 H 1.09000 * 109.47083 * 119.99392 * 2 1 3 32 32 H 1.08991 * 109.47669 * 59.99871 * 3 2 1 33 33 H 1.09000 * 109.47105 * 299.99302 * 3 2 1 34 34 H 0.96999 * 120.00009 * 334.99871 * 6 4 3 35 35 H 1.08997 * 109.46643 * 59.99833 * 9 7 6 36 36 H 1.08998 * 109.46895 * 299.99957 * 9 7 6 37 37 H 1.08005 * 119.87905 * 0.02562 * 11 10 9 38 38 H 1.07999 * 119.74833 * 179.70020 * 12 11 10 39 39 H 1.08004 * 119.87487 * 180.29906 * 13 12 11 40 40 H 1.08002 * 120.12666 * 179.74759 * 14 13 12 41 41 H 0.97001 * 120.00439 * 179.97438 * 19 18 16 42 42 H 0.97006 * 120.00045 * 359.97438 * 25 24 4 43 43 H 0.96997 * 120.00142 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8529 -0.8410 6 7 4.0578 0.8590 1.2528 7 6 5.2797 0.2925 1.3011 8 8 5.9753 0.2653 0.3079 9 6 5.7818 -0.3073 2.5893 10 6 7.1630 -0.8709 2.3762 11 6 7.3264 -2.2041 2.0757 12 6 8.5962 -2.7265 1.8853 13 6 9.7141 -1.9122 1.9835 14 6 9.5746 -0.5765 2.2831 15 6 8.2907 -0.0364 2.4842 16 6 8.1351 1.3348 2.7920 17 1 7.2153 1.8431 2.5430 18 6 9.1729 2.0333 3.4193 19 7 10.1412 1.3780 4.0062 20 14 9.1755 3.9013 3.4187 21 1 8.4512 4.3978 4.6162 22 1 10.5760 4.3943 3.4474 23 1 8.5014 4.3968 2.1917 24 6 4.0723 2.8579 -0.1233 25 7 3.7472 3.5963 -1.2028 26 8 4.7693 3.3325 0.7485 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0278 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.5013 0.8804 2.0470 35 1 5.1091 -1.1046 2.9052 36 1 5.8183 0.4636 3.3590 37 1 6.4623 -2.8466 1.9922 38 1 8.7153 -3.7748 1.6545 39 1 10.6984 -2.3288 1.8285 40 1 10.4470 0.0550 2.3632 41 1 10.8608 1.8621 4.4407 42 1 3.1901 3.2166 -1.9003 43 1 4.0708 4.5072 -1.2828 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804808836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:51 Heat of formation + Delta-G solvation = -75.694844 kcal Electronic energy + Delta-G solvation = -25186.989891 eV Core-core repulsion = 21616.899504 eV Total energy + Delta-G solvation = -3570.090387 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.09606 -38.53408 -37.19182 -35.97410 -33.59917 -33.49665 -33.15206 -31.62017 -29.44712 -29.23692 -26.59471 -25.01388 -24.55613 -21.49376 -21.06530 -20.79486 -20.08654 -19.24909 -17.60469 -17.04931 -16.83452 -16.40325 -15.67342 -15.24636 -14.91750 -14.63142 -14.43937 -14.30826 -13.79981 -13.58398 -13.42929 -13.00946 -12.93386 -12.67294 -12.45429 -12.07335 -11.63669 -11.45588 -11.42563 -11.34361 -11.04363 -10.93887 -10.92130 -10.83704 -10.57320 -10.26925 -9.97378 -9.61307 -9.37740 -9.26143 -9.11727 -9.02035 -8.68028 -7.21264 -7.17731 -6.61876 -4.20664 2.76982 2.89181 3.04147 3.17648 3.25455 3.28826 3.39859 3.60337 3.80473 4.09404 4.49811 4.66568 4.73727 4.78393 5.08322 5.15397 5.24821 5.34274 5.52644 5.59354 5.70226 5.81493 5.89640 5.94335 6.06106 6.13133 6.24454 6.36817 6.54211 6.60012 6.68068 6.83979 6.90550 7.22829 7.36148 7.40400 7.53106 7.75795 7.94886 8.04349 8.20940 8.24270 8.37900 8.43815 8.78787 8.93739 9.05340 9.13531 10.32231 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.013015 B = 0.005091 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.883430 B = 5498.250653 C = 7074.712058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.120 4.120 4 C 0.130 3.870 5 H 0.112 0.888 6 N -0.723 5.723 7 C 0.523 3.477 8 O -0.520 6.520 9 C -0.069 4.069 10 C -0.182 4.182 11 C -0.080 4.080 12 C -0.243 4.243 13 C -0.107 4.107 14 C -0.160 4.160 15 C 0.130 3.870 16 C -0.452 4.452 17 H 0.079 0.921 18 C 0.078 3.922 19 N -0.797 5.797 20 Si 0.900 3.100 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.259 1.259 24 C 0.499 3.501 25 N -0.860 5.860 26 O -0.517 6.517 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.399 0.601 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.116 0.884 41 H 0.278 0.722 42 H 0.397 0.603 43 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.818 1.408 -6.904 19.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.159 4.159 4 C 0.020 3.980 5 H 0.129 0.871 6 N -0.377 5.377 7 C 0.311 3.689 8 O -0.393 6.393 9 C -0.108 4.108 10 C -0.184 4.184 11 C -0.099 4.099 12 C -0.262 4.262 13 C -0.126 4.126 14 C -0.180 4.180 15 C 0.127 3.873 16 C -0.481 4.481 17 H 0.097 0.903 18 C -0.139 4.139 19 N -0.423 5.423 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.183 1.183 24 C 0.282 3.718 25 N -0.425 5.425 26 O -0.390 6.390 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.233 0.767 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.134 0.866 41 H 0.089 0.911 42 H 0.225 0.775 43 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -16.606 1.544 -6.792 18.008 hybrid contribution -0.253 1.201 -0.061 1.229 sum -16.859 2.745 -6.853 18.405 Atomic orbital electron populations 1.21772 0.95624 1.01805 1.01726 1.21530 0.95744 0.95742 1.03178 1.21857 0.91982 0.98585 1.03440 1.20757 0.94455 0.91382 0.91386 0.87078 1.45830 1.19212 1.60876 1.11761 1.21245 0.79445 0.76574 0.91625 1.90665 1.54813 1.56853 1.36951 1.20241 0.95957 1.00225 0.94410 1.19042 0.92336 0.93165 1.13867 1.20276 0.95443 0.94328 0.99826 1.20269 0.93019 0.97692 1.15261 1.20656 0.96194 0.94807 1.00915 1.21285 0.98088 0.94062 1.04520 1.17344 0.90446 0.92355 0.87131 1.19571 1.00932 0.94372 1.33251 0.90332 1.25864 0.94414 1.00659 0.92960 1.69831 1.09711 1.37870 1.24875 0.86425 0.78043 0.83022 0.80014 1.19568 1.20282 1.18267 1.21343 0.80044 0.88722 0.81725 1.43879 1.56635 1.18021 1.23996 1.90822 1.35844 1.72320 1.40034 0.92695 0.92817 0.92588 0.91545 0.91146 0.90761 0.90319 0.76651 0.90661 0.88464 0.89847 0.89787 0.89704 0.86625 0.91111 0.77502 0.77078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.15 0.37 -0.58 16 2 C -0.12 -0.95 5.82 -26.74 -0.16 -1.10 16 3 C -0.12 -0.96 4.70 -26.73 -0.13 -1.08 16 4 C 0.13 1.65 2.38 -69.08 -0.16 1.48 16 5 H 0.11 1.49 7.58 -51.93 -0.39 1.10 16 6 N -0.72 -10.86 4.06 -54.93 -0.22 -11.08 16 7 C 0.52 10.60 7.29 -10.98 -0.08 10.52 16 8 O -0.52 -12.82 15.70 5.55 0.09 -12.73 16 9 C -0.07 -1.41 5.18 -29.04 -0.15 -1.56 16 10 C -0.18 -4.57 4.43 -103.92 -0.46 -5.03 16 11 C -0.08 -1.91 9.66 -39.66 -0.38 -2.30 16 12 C -0.24 -5.85 10.05 -39.29 -0.39 -6.24 16 13 C -0.11 -2.72 10.02 -39.66 -0.40 -3.12 16 14 C -0.16 -4.48 8.68 -38.87 -0.34 -4.81 16 15 C 0.13 3.65 5.56 -106.83 -0.59 3.05 16 16 C -0.45 -12.77 8.14 -37.75 -0.31 -13.08 16 17 H 0.08 2.25 6.68 -52.48 -0.35 1.90 16 18 C 0.08 2.10 5.16 -17.34 -0.09 2.01 16 19 N -0.80 -21.64 10.97 55.55 0.61 -21.04 16 20 Si 0.90 20.73 29.59 -169.99 -5.03 15.70 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 23 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 24 C 0.50 7.47 7.46 -10.99 -0.08 7.39 16 25 N -0.86 -8.49 8.73 31.22 0.27 -8.22 16 26 O -0.52 -10.77 17.16 5.55 0.10 -10.68 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.59 7.75 -51.93 -0.40 0.19 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.45 7.43 -51.93 -0.39 0.07 16 34 H 0.40 4.85 8.60 -40.82 -0.35 4.50 16 35 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 36 H 0.10 2.03 7.06 -51.93 -0.37 1.67 16 37 H 0.08 1.73 8.06 -52.48 -0.42 1.30 16 38 H 0.08 1.79 8.06 -52.49 -0.42 1.36 16 39 H 0.08 1.92 8.06 -52.48 -0.42 1.50 16 40 H 0.12 3.32 6.22 -52.49 -0.33 2.99 16 41 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 42 H 0.40 2.41 8.19 -40.82 -0.33 2.08 16 43 H 0.40 3.71 8.93 -40.82 -0.36 3.35 16 LS Contribution 361.65 15.07 5.45 5.45 Total: -1.00 -36.59 361.65 -8.30 -44.89 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -6.21 Total: 12.15 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -3.35 Total: -14.44 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.66 Total: -40.33 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: 0.18 Total: -23.41 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.59 -8.30 -44.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804808836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.803 kcal (2) G-P(sol) polarization free energy of solvation -36.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds