Wall clock time and date at job start Tue Mar 31 2020 08:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47043 * 2 1 4 4 C 1.53008 * 109.46920 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46905 * 55.00046 * 4 3 2 6 6 N 1.46499 * 109.47049 * 294.99767 * 4 3 2 7 7 C 1.34774 * 119.99752 * 155.00320 * 6 4 3 8 8 O 1.21286 * 120.00075 * 359.97438 * 7 6 4 9 9 C 1.50704 * 120.00083 * 179.97438 * 7 6 4 10 10 C 1.50694 * 109.47262 * 179.97438 * 9 7 6 11 11 C 1.37639 * 120.12721 * 265.00053 * 10 9 7 12 12 C 1.38617 * 120.24745 * 180.29647 * 11 10 9 13 13 C 1.38655 * 120.49962 * 359.44345 * 12 11 10 14 14 C 1.37591 * 120.24882 * 0.56113 * 13 12 11 15 15 C 1.40696 * 120.12850 * 85.02157 * 10 9 7 16 16 C 1.41390 * 120.24641 * 359.95825 * 15 10 9 17 17 H 1.08004 * 119.99865 * 334.08674 * 16 15 10 18 18 C 1.39940 * 120.00399 * 154.09052 * 16 15 10 19 19 N 1.30822 * 119.99912 * 343.61139 * 18 16 15 20 20 Si 1.86803 * 120.00192 * 163.62242 * 18 16 15 21 21 H 1.48494 * 109.47516 * 89.99468 * 20 18 16 22 22 H 1.48504 * 109.46852 * 209.99866 * 20 18 16 23 23 H 1.48504 * 109.47021 * 329.99095 * 20 18 16 24 24 C 1.50702 * 109.46797 * 174.99552 * 4 3 2 25 25 N 1.34774 * 120.00311 * 300.00162 * 24 4 3 26 26 O 1.21287 * 119.99841 * 120.00180 * 24 4 3 27 27 H 1.08997 * 109.47633 * 300.00735 * 1 2 3 28 28 H 1.09000 * 109.47083 * 60.00608 * 1 2 3 29 29 H 1.09010 * 109.47217 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47633 * 239.99265 * 2 1 3 31 31 H 1.09000 * 109.47083 * 119.99392 * 2 1 3 32 32 H 1.08991 * 109.47669 * 59.99871 * 3 2 1 33 33 H 1.09000 * 109.47105 * 299.99302 * 3 2 1 34 34 H 0.96999 * 120.00009 * 334.99871 * 6 4 3 35 35 H 1.08997 * 109.46643 * 59.99833 * 9 7 6 36 36 H 1.08998 * 109.46895 * 299.99957 * 9 7 6 37 37 H 1.08005 * 119.87905 * 0.02562 * 11 10 9 38 38 H 1.07999 * 119.74833 * 179.70020 * 12 11 10 39 39 H 1.08004 * 119.87487 * 180.29906 * 13 12 11 40 40 H 1.08002 * 120.12666 * 179.74759 * 14 13 12 41 41 H 0.97001 * 120.00439 * 179.97438 * 19 18 16 42 42 H 0.97006 * 120.00045 * 359.97438 * 25 24 4 43 43 H 0.96997 * 120.00142 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8529 -0.8410 6 7 4.0578 0.8590 1.2528 7 6 5.2797 0.2925 1.3011 8 8 5.9753 0.2653 0.3079 9 6 5.7818 -0.3073 2.5893 10 6 7.1630 -0.8709 2.3762 11 6 7.3264 -2.2041 2.0757 12 6 8.5962 -2.7265 1.8853 13 6 9.7141 -1.9122 1.9835 14 6 9.5746 -0.5765 2.2831 15 6 8.2907 -0.0364 2.4842 16 6 8.1351 1.3348 2.7920 17 1 7.2153 1.8431 2.5430 18 6 9.1729 2.0333 3.4193 19 7 10.1412 1.3780 4.0062 20 14 9.1755 3.9013 3.4187 21 1 8.4512 4.3978 4.6162 22 1 10.5760 4.3943 3.4474 23 1 8.5014 4.3968 2.1917 24 6 4.0723 2.8579 -0.1233 25 7 3.7472 3.5963 -1.2028 26 8 4.7693 3.3325 0.7485 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0278 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.5013 0.8804 2.0470 35 1 5.1091 -1.1046 2.9052 36 1 5.8183 0.4636 3.3590 37 1 6.4623 -2.8466 1.9922 38 1 8.7153 -3.7748 1.6545 39 1 10.6984 -2.3288 1.8285 40 1 10.4470 0.0550 2.3632 41 1 10.8608 1.8621 4.4407 42 1 3.1901 3.2166 -1.9003 43 1 4.0708 4.5072 -1.2828 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804808836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:50 Heat of formation + Delta-G solvation = -102.693640 kcal Electronic energy + Delta-G solvation = -25188.160646 eV Core-core repulsion = 21616.899504 eV Total energy + Delta-G solvation = -3571.261142 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.39099 -40.08779 -38.98361 -37.00736 -35.50843 -34.74705 -34.20534 -33.37438 -31.35216 -30.41606 -28.25637 -26.83576 -25.57701 -22.83275 -22.55925 -22.14589 -21.29469 -20.98497 -19.07832 -18.64345 -18.06076 -17.76776 -17.28600 -16.73105 -16.22444 -16.08859 -15.81920 -15.63793 -15.30454 -15.13528 -14.64601 -14.57932 -14.38843 -14.14106 -13.56762 -13.38891 -13.30733 -12.91554 -12.80521 -12.77281 -12.64670 -12.50439 -12.20908 -12.15041 -11.98477 -11.52251 -11.31658 -11.25144 -11.20563 -11.04045 -10.76913 -10.66464 -10.00040 -9.21455 -9.15269 -8.61903 -6.29342 0.98156 1.13456 1.28792 1.41902 1.49785 1.61109 1.78475 2.18460 2.29673 2.70121 2.77231 3.66604 3.78347 3.91621 4.05587 4.15807 4.29131 4.39417 4.42698 4.52713 4.62794 4.67161 4.72840 4.81128 4.81897 4.92983 5.03750 5.08449 5.20888 5.31720 5.34471 5.37657 5.48543 5.53199 5.55472 5.78529 5.88973 6.04499 6.18696 6.22258 6.43259 6.44852 6.63422 6.76249 6.99955 7.11583 7.35021 7.45266 8.34491 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.013015 B = 0.005091 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.883430 B = 5498.250653 C = 7074.712058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.108 4.108 4 C 0.129 3.871 5 H 0.106 0.894 6 N -0.705 5.705 7 C 0.525 3.475 8 O -0.572 6.572 9 C -0.070 4.070 10 C -0.187 4.187 11 C -0.089 4.089 12 C -0.240 4.240 13 C -0.117 4.117 14 C -0.194 4.194 15 C 0.096 3.904 16 C -0.481 4.481 17 H 0.061 0.939 18 C 0.041 3.959 19 N -0.823 5.823 20 Si 0.963 3.037 21 H -0.256 1.256 22 H -0.259 1.259 23 H -0.282 1.282 24 C 0.492 3.508 25 N -0.834 5.834 26 O -0.586 6.586 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.414 0.586 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.286 0.714 42 H 0.419 0.581 43 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.443 0.873 -7.584 21.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.146 4.146 4 C 0.020 3.980 5 H 0.124 0.876 6 N -0.358 5.358 7 C 0.313 3.687 8 O -0.450 6.450 9 C -0.109 4.109 10 C -0.189 4.189 11 C -0.107 4.107 12 C -0.259 4.259 13 C -0.135 4.135 14 C -0.214 4.214 15 C 0.093 3.907 16 C -0.511 4.511 17 H 0.080 0.920 18 C -0.173 4.173 19 N -0.450 5.450 20 Si 0.786 3.214 21 H -0.181 1.181 22 H -0.183 1.183 23 H -0.207 1.207 24 C 0.276 3.724 25 N -0.399 5.399 26 O -0.465 6.465 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.251 0.749 35 H 0.136 0.864 36 H 0.106 0.894 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.251 0.749 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -19.311 1.010 -7.497 20.740 hybrid contribution 0.459 1.255 0.050 1.337 sum -18.852 2.265 -7.447 20.396 Atomic orbital electron populations 1.21740 0.94229 1.02152 1.02471 1.21519 0.96864 0.95086 1.02656 1.21876 0.87890 0.99517 1.05296 1.21029 0.97496 0.89665 0.89817 0.87596 1.45594 1.17627 1.59104 1.13491 1.21071 0.80432 0.76609 0.90588 1.90638 1.56600 1.59297 1.38486 1.20267 0.94775 1.01311 0.94590 1.19544 0.93645 0.93754 1.11962 1.20739 0.96862 0.94290 0.98764 1.20736 0.92646 0.99191 1.13314 1.20949 0.98053 0.94061 1.00439 1.21280 0.97676 0.95296 1.07126 1.17710 0.91668 0.93030 0.88242 1.19575 1.01203 0.95160 1.35149 0.92043 1.26506 0.93941 1.04524 0.92352 1.69864 1.10298 1.39416 1.25433 0.85496 0.78723 0.77989 0.79224 1.18065 1.18322 1.20679 1.21771 0.79175 0.89644 0.81836 1.43652 1.55425 1.17884 1.22937 1.90803 1.39106 1.73845 1.42736 0.92342 0.91693 0.92512 0.91774 0.92112 0.90053 0.87275 0.74894 0.86376 0.89422 0.86085 0.86356 0.87562 0.88718 0.90333 0.74937 0.76421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 71.98 0.71 -0.66 16 2 C -0.12 -1.54 5.82 30.59 0.18 -1.36 16 3 C -0.11 -1.40 4.70 30.60 0.14 -1.26 16 4 C 0.13 3.11 2.38 44.25 0.11 3.22 16 5 H 0.11 2.74 7.58 -2.39 -0.02 2.72 16 6 N -0.70 -20.70 4.06 -446.07 -1.81 -22.51 16 7 C 0.52 21.37 7.29 87.66 0.64 22.01 16 8 O -0.57 -28.88 15.70 -3.05 -0.05 -28.93 16 9 C -0.07 -2.86 5.18 29.10 0.15 -2.71 16 10 C -0.19 -9.45 4.43 -19.41 -0.09 -9.54 16 11 C -0.09 -4.06 9.66 22.22 0.21 -3.85 16 12 C -0.24 -11.11 10.05 22.46 0.23 -10.89 16 13 C -0.12 -5.93 10.02 22.22 0.22 -5.71 16 14 C -0.19 -11.26 8.68 22.73 0.20 -11.06 16 15 C 0.10 5.58 5.56 -21.29 -0.12 5.46 16 16 C -0.48 -28.54 8.14 23.46 0.19 -28.35 16 17 H 0.06 3.74 6.68 -2.91 -0.02 3.72 16 18 C 0.04 2.30 5.16 85.26 0.44 2.74 16 19 N -0.82 -46.32 10.97 21.82 0.24 -46.08 16 20 Si 0.96 44.19 29.59 68.60 2.03 46.22 16 21 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 22 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 24 C 0.49 14.47 7.46 87.66 0.65 15.12 16 25 N -0.83 -15.07 8.73 -173.53 -1.52 -16.59 16 26 O -0.59 -25.05 17.16 -3.05 -0.05 -25.10 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 0.53 8.14 -2.38 -0.02 0.52 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.88 7.75 -2.39 -0.02 0.86 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.11 0.79 7.43 -2.39 -0.02 0.78 16 34 H 0.41 9.54 8.60 -92.71 -0.80 8.75 16 35 H 0.12 3.69 8.05 -2.39 -0.02 3.67 16 36 H 0.09 3.75 7.06 -2.39 -0.02 3.74 16 37 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 38 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 39 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 40 H 0.09 5.75 6.22 -2.91 -0.02 5.73 16 41 H 0.29 14.58 8.30 -92.71 -0.77 13.81 16 42 H 0.42 3.90 8.19 -92.70 -0.76 3.14 16 43 H 0.40 6.98 8.93 -92.71 -0.83 6.15 16 Total: -1.00 -84.74 361.65 1.39 -83.35 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: -1.33 Total: 36.49 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 3.87 Total: -26.84 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -3.09 Total: -85.19 kcal Atomic # 8 Polarization: -53.93 SS G_CDS: -0.10 Total: -54.03 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -84.74 1.39 -83.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804808836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.343 kcal (2) G-P(sol) polarization free energy of solvation -84.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds