Wall clock time and date at job start Tue Mar 31 2020 09:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47325 * 2 1 4 4 C 1.50698 * 109.47320 * 239.99894 * 2 1 3 5 5 H 1.08001 * 120.00382 * 240.00121 * 4 2 1 6 6 C 1.37880 * 120.00084 * 59.99852 * 4 2 1 7 7 N 1.31514 * 119.99666 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00044 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46961 * 90.00535 * 8 6 4 10 10 H 1.48501 * 109.46952 * 209.99848 * 8 6 4 11 11 H 1.48493 * 109.47581 * 329.99987 * 8 6 4 12 12 C 1.53001 * 109.47093 * 119.99763 * 2 1 3 13 13 N 1.46496 * 109.47152 * 300.00263 * 12 2 1 14 14 C 1.34779 * 119.99649 * 179.97438 * 13 12 2 15 15 O 1.21585 * 120.00336 * 0.02562 * 14 13 12 16 16 C 1.47524 * 119.99599 * 180.02562 * 14 13 12 17 17 C 1.39986 * 120.59850 * 0.02562 * 16 14 13 18 18 C 1.38344 * 118.34816 * 179.97438 * 17 16 14 19 19 C 1.38356 * 119.46041 * 359.97438 * 18 17 16 20 20 C 1.50698 * 119.40672 * 180.02562 * 19 18 17 21 21 C 1.52997 * 117.50094 * 343.75348 * 20 19 18 22 22 C 1.52990 * 117.50292 * 275.08972 * 20 19 18 23 23 N 1.31883 * 121.18175 * 359.74853 * 19 18 17 24 24 C 1.32241 * 121.80116 * 0.52529 * 23 19 18 25 25 O 1.35422 * 119.79870 * 179.75340 * 24 23 19 26 26 H 1.08999 * 109.47278 * 300.00003 * 1 2 3 27 27 H 1.09000 * 109.47099 * 60.00153 * 1 2 3 28 28 H 1.08999 * 109.47192 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47291 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46906 * 299.99965 * 3 2 1 31 31 H 1.08999 * 109.46945 * 59.99793 * 3 2 1 32 32 H 0.97002 * 119.99666 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.46942 * 179.97438 * 12 2 1 34 34 H 1.09008 * 109.46873 * 60.00404 * 12 2 1 35 35 H 0.96999 * 120.00144 * 359.97438 * 13 12 2 36 36 H 1.08002 * 120.82619 * 0.02562 * 17 16 14 37 37 H 1.08002 * 120.26943 * 179.97438 * 18 17 16 38 38 H 1.09000 * 115.54354 * 129.42012 * 20 19 18 39 39 H 1.08997 * 117.49888 * 359.97438 * 21 20 19 40 40 H 1.09003 * 117.50004 * 145.01818 * 21 20 19 41 41 H 1.08996 * 117.50557 * 214.98205 * 22 20 19 42 42 H 1.08998 * 117.50014 * 359.97438 * 22 20 19 43 43 H 0.96700 * 114.00112 * 269.72522 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.3448 -2.1616 -4.4123 10 1 2.4873 -0.1402 -5.1120 11 1 3.6309 -1.7566 -3.7120 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8768 -0.4914 3.6695 15 8 2.5758 -1.4799 3.7811 16 6 1.3845 0.2037 4.8740 17 6 0.5785 1.3426 4.7601 18 6 0.1424 1.9574 5.9201 19 6 0.5107 1.4348 7.1471 20 6 0.0345 2.1052 8.4099 21 6 -0.5091 3.5304 8.2914 22 6 0.8562 3.2828 8.9378 23 7 1.2666 0.3574 7.2312 24 6 1.7145 -0.2655 6.1541 25 8 2.4923 -1.3660 6.2877 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.7095 1.1617 -3.4844 33 1 3.1300 -0.7216 1.2490 34 1 1.6766 -1.7489 1.2492 35 1 0.9942 0.7582 2.3564 36 1 0.3032 1.7311 3.7907 37 1 -0.4805 2.8382 5.8683 38 1 -0.4321 1.4479 9.1437 39 1 -0.5218 3.9834 7.3001 40 1 -1.3330 3.8111 8.9476 41 1 0.9300 3.4007 10.0188 42 1 1.7416 3.5725 8.3719 43 1 3.4396 -1.1758 6.3272 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822397923.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:33 Heat of formation + Delta-G solvation = -18.366877 kcal Electronic energy + Delta-G solvation = -24587.114525 eV Core-core repulsion = 21019.510065 eV Total energy + Delta-G solvation = -3567.604460 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.99845 -39.07697 -37.88159 -36.44391 -36.28513 -33.56239 -32.64479 -30.91743 -30.20422 -26.19893 -25.78327 -25.41194 -24.55501 -23.60740 -22.47222 -21.68150 -20.35673 -18.96831 -18.50458 -17.65188 -17.20772 -16.36705 -15.88299 -15.41518 -15.25334 -14.90670 -14.71659 -14.59797 -14.01176 -13.66358 -13.29903 -13.00550 -12.79447 -12.69777 -12.34242 -12.21405 -11.83517 -11.73503 -11.44711 -11.23956 -10.99453 -10.89643 -10.82085 -10.72436 -10.43921 -10.24443 -10.05637 -9.95588 -9.68824 -9.53422 -9.23440 -8.95676 -8.83605 -8.49025 -8.35072 -6.05851 -4.15838 0.45726 0.93525 2.89593 3.17219 3.26404 3.33488 3.37163 3.50218 3.58832 3.82388 4.12238 4.37277 4.42724 4.50082 4.58962 4.74791 4.77618 4.94977 5.19860 5.21227 5.25330 5.35170 5.46013 5.61423 5.70365 5.76040 5.87799 6.14725 6.23018 6.27730 6.45193 6.71744 6.75412 6.87467 6.94231 6.96616 7.29865 7.45269 7.50342 7.65589 7.71134 7.95694 7.96042 8.09970 8.33967 8.59399 8.84817 9.50231 10.95689 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.026495 B = 0.002995 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.567848 B = 9347.031651 C =10133.741183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.132 3.868 13 N -0.711 5.711 14 C 0.551 3.449 15 O -0.530 6.530 16 C -0.200 4.200 17 C -0.026 4.026 18 C -0.189 4.189 19 C 0.200 3.800 20 C -0.113 4.113 21 C -0.171 4.171 22 C -0.160 4.160 23 N -0.504 5.504 24 C 0.372 3.628 25 O -0.458 6.458 26 H 0.004 0.996 27 H 0.086 0.914 28 H 0.028 0.972 29 H 0.027 0.973 30 H 0.086 0.914 31 H 0.004 0.996 32 H 0.260 0.740 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.395 0.605 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.125 0.875 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.745 7.893 18.831 20.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.010 3.990 13 N -0.362 5.362 14 C 0.335 3.665 15 O -0.408 6.408 16 C -0.207 4.207 17 C -0.052 4.052 18 C -0.209 4.209 19 C 0.061 3.939 20 C -0.132 4.132 21 C -0.208 4.208 22 C -0.198 4.198 23 N -0.223 5.223 24 C 0.191 3.809 25 O -0.265 6.265 26 H 0.023 0.977 27 H 0.105 0.895 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.105 0.895 31 H 0.023 0.977 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.231 0.769 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.143 0.857 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -2.556 6.584 19.484 20.725 hybrid contribution 0.216 0.361 -1.718 1.769 sum -2.340 6.945 17.766 19.219 Atomic orbital electron populations 1.21842 0.97754 0.99301 1.00019 1.18362 0.92800 0.92762 0.90557 1.21837 0.98668 0.98335 1.00018 1.20978 1.31537 1.12128 0.89830 0.92369 1.24878 0.94838 0.94901 0.98875 1.69797 1.36713 1.22708 1.23271 0.86561 0.79352 0.79386 0.82523 1.20689 1.21256 1.19886 1.21773 0.98267 0.95904 0.83056 1.46238 1.52457 1.31661 1.05827 1.17814 0.81333 0.84359 0.82947 1.90784 1.37921 1.25484 1.86588 1.21344 1.05213 0.98875 0.95260 1.21803 0.91733 0.91965 0.99728 1.21881 1.03678 1.03178 0.92124 1.20222 0.90738 0.89468 0.93423 1.20834 1.05121 0.90754 0.96442 1.23147 0.97717 0.96823 1.03148 1.22994 0.95308 1.00192 1.01256 1.66956 1.13186 1.08737 1.33470 1.19095 0.90926 0.84799 0.86059 1.84719 1.21524 1.25421 1.94851 0.97663 0.89499 0.95325 0.95351 0.89500 0.97676 0.92978 0.92466 0.92453 0.76860 0.83672 0.83690 0.85737 0.87973 0.87806 0.87981 0.88517 0.73598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.08 37.15 0.30 -2.60 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 4 C -0.51 -13.07 8.01 -34.44 -0.28 -13.35 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.23 9.35 55.43 0.52 -22.72 16 8 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 C 0.13 2.77 4.50 -4.04 -0.02 2.75 16 13 N -0.71 -12.55 4.91 -61.35 -0.30 -12.85 16 14 C 0.55 9.83 7.77 -12.47 -0.10 9.74 16 15 O -0.53 -11.08 15.19 -16.48 -0.25 -11.33 16 16 C -0.20 -2.96 5.90 -104.69 -0.62 -3.58 16 17 C -0.03 -0.31 9.64 -38.89 -0.37 -0.68 16 18 C -0.19 -1.88 9.34 -39.50 -0.37 -2.25 16 19 C 0.20 2.24 6.46 -82.53 -0.53 1.70 16 20 C -0.11 -0.94 6.21 -91.78 -0.57 -1.51 16 21 C -0.17 -1.00 9.79 -26.70 -0.26 -1.26 16 22 C -0.16 -1.07 10.24 -26.70 -0.27 -1.35 16 23 N -0.50 -6.97 10.28 -9.21 -0.09 -7.06 16 24 C 0.37 5.55 7.77 -16.61 -0.13 5.42 16 25 O -0.46 -6.90 11.66 -39.73 -0.46 -7.36 16 26 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 27 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 31 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 32 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 35 H 0.40 6.18 4.26 -40.82 -0.17 6.01 16 36 H 0.15 1.42 6.52 -52.49 -0.34 1.08 16 37 H 0.15 1.01 6.22 -52.49 -0.33 0.68 16 38 H 0.12 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.10 0.54 6.37 -51.93 -0.33 0.21 16 40 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.40 4.37 9.06 45.56 0.41 4.78 16 LS Contribution 349.16 15.07 5.26 5.26 Total: -1.00 -30.65 349.16 -8.47 -39.12 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -5.03 Total: 8.15 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -3.09 Total: -6.70 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.12 Total: -42.63 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.71 Total: -18.69 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.65 -8.47 -39.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822397923.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.751 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds