Wall clock time and date at job start Tue Mar 31 2020 09:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47325 * 2 1 4 4 C 1.50698 * 109.47320 * 239.99894 * 2 1 3 5 5 H 1.08001 * 120.00382 * 240.00121 * 4 2 1 6 6 C 1.37880 * 120.00084 * 59.99852 * 4 2 1 7 7 N 1.31514 * 119.99666 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00044 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46961 * 90.00535 * 8 6 4 10 10 H 1.48501 * 109.46952 * 209.99848 * 8 6 4 11 11 H 1.48493 * 109.47581 * 329.99987 * 8 6 4 12 12 C 1.53001 * 109.47093 * 119.99763 * 2 1 3 13 13 N 1.46496 * 109.47152 * 300.00263 * 12 2 1 14 14 C 1.34779 * 119.99649 * 179.97438 * 13 12 2 15 15 O 1.21585 * 120.00336 * 0.02562 * 14 13 12 16 16 C 1.47524 * 119.99599 * 180.02562 * 14 13 12 17 17 C 1.39986 * 120.59850 * 0.02562 * 16 14 13 18 18 C 1.38344 * 118.34816 * 179.97438 * 17 16 14 19 19 C 1.38356 * 119.46041 * 359.97438 * 18 17 16 20 20 C 1.50698 * 119.40672 * 180.02562 * 19 18 17 21 21 C 1.52997 * 117.50094 * 343.75348 * 20 19 18 22 22 C 1.52990 * 117.50292 * 275.08972 * 20 19 18 23 23 N 1.31883 * 121.18175 * 359.74853 * 19 18 17 24 24 C 1.32241 * 121.80116 * 0.52529 * 23 19 18 25 25 O 1.35422 * 119.79870 * 179.75340 * 24 23 19 26 26 H 1.08999 * 109.47278 * 300.00003 * 1 2 3 27 27 H 1.09000 * 109.47099 * 60.00153 * 1 2 3 28 28 H 1.08999 * 109.47192 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47291 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46906 * 299.99965 * 3 2 1 31 31 H 1.08999 * 109.46945 * 59.99793 * 3 2 1 32 32 H 0.97002 * 119.99666 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.46942 * 179.97438 * 12 2 1 34 34 H 1.09008 * 109.46873 * 60.00404 * 12 2 1 35 35 H 0.96999 * 120.00144 * 359.97438 * 13 12 2 36 36 H 1.08002 * 120.82619 * 0.02562 * 17 16 14 37 37 H 1.08002 * 120.26943 * 179.97438 * 18 17 16 38 38 H 1.09000 * 115.54354 * 129.42012 * 20 19 18 39 39 H 1.08997 * 117.49888 * 359.97438 * 21 20 19 40 40 H 1.09003 * 117.50004 * 145.01818 * 21 20 19 41 41 H 1.08996 * 117.50557 * 214.98205 * 22 20 19 42 42 H 1.08998 * 117.50014 * 359.97438 * 22 20 19 43 43 H 0.96700 * 114.00112 * 269.72522 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.3448 -2.1616 -4.4123 10 1 2.4873 -0.1402 -5.1120 11 1 3.6309 -1.7566 -3.7120 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8768 -0.4914 3.6695 15 8 2.5758 -1.4799 3.7811 16 6 1.3845 0.2037 4.8740 17 6 0.5785 1.3426 4.7601 18 6 0.1424 1.9574 5.9201 19 6 0.5107 1.4348 7.1471 20 6 0.0345 2.1052 8.4099 21 6 -0.5091 3.5304 8.2914 22 6 0.8562 3.2828 8.9378 23 7 1.2666 0.3574 7.2312 24 6 1.7145 -0.2655 6.1541 25 8 2.4923 -1.3660 6.2877 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.7095 1.1617 -3.4844 33 1 3.1300 -0.7216 1.2490 34 1 1.6766 -1.7489 1.2492 35 1 0.9942 0.7582 2.3564 36 1 0.3032 1.7311 3.7907 37 1 -0.4805 2.8382 5.8683 38 1 -0.4321 1.4479 9.1437 39 1 -0.5218 3.9834 7.3001 40 1 -1.3330 3.8111 8.9476 41 1 0.9300 3.4007 10.0188 42 1 1.7416 3.5725 8.3719 43 1 3.4396 -1.1758 6.3272 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822397923.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:33 Heat of formation + Delta-G solvation = -38.897566 kcal Electronic energy + Delta-G solvation = -24588.004802 eV Core-core repulsion = 21019.510065 eV Total energy + Delta-G solvation = -3568.494737 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.02598 -40.39104 -38.84412 -37.99252 -37.23383 -35.12071 -33.86940 -32.56984 -31.24417 -27.65220 -27.56571 -27.14594 -25.85299 -24.50439 -23.04301 -22.62624 -21.57685 -20.66090 -19.61630 -18.92786 -18.14255 -17.77313 -17.27854 -16.62001 -16.53459 -16.34842 -15.97195 -15.71331 -15.32901 -14.84129 -14.61076 -14.51371 -14.16397 -14.01530 -13.73693 -13.20845 -13.09496 -12.99526 -12.80251 -12.69726 -12.60349 -12.27232 -12.25696 -12.13591 -11.63431 -11.49279 -11.35979 -11.31683 -11.13733 -10.98631 -10.71960 -10.47046 -10.40138 -10.08066 -9.77367 -8.02900 -6.18124 -0.54648 0.01854 1.42330 1.45647 1.53421 1.75732 2.11620 2.38443 2.47718 2.57239 3.03166 3.21042 3.29796 3.64672 3.67034 3.88222 3.95107 4.06761 4.16962 4.35070 4.42405 4.49763 4.53112 4.70832 4.76985 4.80597 4.88485 4.98431 5.04532 5.08796 5.10136 5.18902 5.20551 5.28623 5.32520 5.38564 5.54368 5.67115 5.67600 6.15449 6.20728 6.43180 6.47228 6.58370 6.77961 6.85534 7.20343 7.49544 8.96068 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.026495 B = 0.002995 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.567848 B = 9347.031651 C =10133.741183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.052 3.948 3 C -0.121 4.121 4 C -0.530 4.530 5 H 0.044 0.956 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.943 3.057 9 H -0.280 1.280 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.148 3.852 13 N -0.702 5.702 14 C 0.552 3.448 15 O -0.568 6.568 16 C -0.222 4.222 17 C -0.019 4.019 18 C -0.177 4.177 19 C 0.199 3.801 20 C -0.136 4.136 21 C -0.149 4.149 22 C -0.160 4.160 23 N -0.525 5.525 24 C 0.357 3.643 25 O -0.478 6.478 26 H 0.038 0.962 27 H 0.065 0.935 28 H 0.016 0.984 29 H 0.018 0.982 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.261 0.739 33 H 0.042 0.958 34 H 0.038 0.962 35 H 0.407 0.593 36 H 0.168 0.832 37 H 0.184 0.816 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.122 0.878 41 H 0.114 0.886 42 H 0.090 0.910 43 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.149 10.191 20.036 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.568 4.568 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.770 3.230 9 H -0.206 1.206 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.025 3.975 13 N -0.354 5.354 14 C 0.340 3.660 15 O -0.449 6.449 16 C -0.229 4.229 17 C -0.045 4.045 18 C -0.196 4.196 19 C 0.061 3.939 20 C -0.155 4.155 21 C -0.186 4.186 22 C -0.198 4.198 23 N -0.245 5.245 24 C 0.178 3.822 25 O -0.288 6.288 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.246 0.754 36 H 0.185 0.815 37 H 0.202 0.798 38 H 0.142 0.858 39 H 0.132 0.868 40 H 0.140 0.860 41 H 0.132 0.868 42 H 0.109 0.891 43 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -3.970 8.911 20.699 22.882 hybrid contribution 0.631 -0.302 -1.971 2.092 sum -3.339 8.609 18.727 20.880 Atomic orbital electron populations 1.21694 0.97083 0.98706 1.00542 1.18355 0.93272 0.93158 0.90070 1.21678 0.98024 0.97654 1.00549 1.21268 1.31769 1.12184 0.91592 0.93812 1.25416 0.95148 0.95575 1.00852 1.69892 1.36964 1.23153 1.23629 0.85786 0.78625 0.78518 0.80029 1.20605 1.20738 1.20186 1.21331 0.97246 0.95092 0.83858 1.45986 1.52672 1.31858 1.04928 1.18247 0.80374 0.83827 0.83596 1.90758 1.39668 1.27321 1.87160 1.21069 1.07727 1.00632 0.93473 1.22077 0.90414 0.90530 1.01469 1.22270 1.02844 1.03682 0.90786 1.20872 0.89209 0.88432 0.95360 1.20917 1.07053 0.91848 0.95647 1.23306 0.97474 0.93851 1.03967 1.23081 0.95782 0.98815 1.02104 1.67021 1.14343 1.10035 1.33074 1.19243 0.91361 0.85036 0.86603 1.84662 1.22683 1.26469 1.94968 0.94310 0.91663 0.96448 0.96238 0.91721 0.94250 0.92981 0.93946 0.94335 0.75428 0.81481 0.79846 0.85783 0.86804 0.85966 0.86785 0.89120 0.72259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 2 C 0.05 2.36 0.50 -52.93 -0.03 2.33 16 3 C -0.12 -5.18 8.08 71.98 0.58 -4.60 16 4 C -0.53 -27.72 8.01 25.60 0.21 -27.51 16 5 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 6 C 0.03 1.56 5.15 84.66 0.44 2.00 16 7 N -0.90 -46.94 9.35 21.45 0.20 -46.74 16 8 Si 0.94 42.26 29.54 68.60 2.03 44.28 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 12 C 0.15 6.27 4.50 86.38 0.39 6.66 16 13 N -0.70 -24.17 4.91 -466.28 -2.29 -26.46 16 14 C 0.55 19.69 7.77 86.69 0.67 20.36 16 15 O -0.57 -24.47 15.19 16.83 0.26 -24.21 16 16 C -0.22 -6.38 5.90 -19.91 -0.12 -6.49 16 17 C -0.02 -0.39 9.64 22.72 0.22 -0.17 16 18 C -0.18 -2.88 9.34 22.32 0.21 -2.68 16 19 C 0.20 4.00 6.46 42.58 0.28 4.28 16 20 C -0.14 -1.88 6.21 -11.54 -0.07 -1.96 16 21 C -0.15 -1.11 9.79 30.62 0.30 -0.81 16 22 C -0.16 -1.68 10.24 30.61 0.31 -1.37 16 23 N -0.53 -14.11 10.28 -296.06 -3.04 -17.15 16 24 C 0.36 10.68 7.77 85.13 0.66 11.34 16 25 O -0.48 -14.94 11.66 -66.35 -0.77 -15.71 16 26 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 27 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 28 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 31 H 0.04 1.36 6.86 -2.39 -0.02 1.35 16 32 H 0.26 13.13 8.31 -92.71 -0.77 12.36 16 33 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.41 11.73 4.26 -92.71 -0.40 11.34 16 36 H 0.17 2.59 6.52 -2.91 -0.02 2.57 16 37 H 0.18 1.54 6.22 -2.91 -0.02 1.52 16 38 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.11 0.60 6.37 -2.39 -0.02 0.58 16 40 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.42 9.62 9.06 -74.06 -0.67 8.95 16 Total: -1.00 -67.57 349.16 0.99 -66.57 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -0.01 Total: 22.76 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 4.63 Total: -3.34 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -5.13 Total: -90.35 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -0.52 Total: -39.92 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -67.57 0.99 -66.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822397923.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.675 kcal (2) G-P(sol) polarization free energy of solvation -67.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds