Wall clock time and date at job start Tue Mar 31 2020 09:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35624 * 120.00151 * 2 1 4 4 C 1.41550 * 120.00458 * 180.02562 * 3 2 1 5 5 O 1.21784 * 119.99801 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00405 * 179.97438 * 4 3 2 7 7 C 1.46502 * 120.00227 * 179.97438 * 6 4 3 8 8 C 1.53036 * 109.46521 * 275.07258 * 7 6 4 9 9 C 1.53181 * 109.31613 * 178.61277 * 8 7 6 10 10 N 1.46926 * 108.77632 * 54.63695 * 9 8 7 11 11 C 1.36939 * 120.63488 * 126.41670 * 10 9 8 12 12 H 1.07997 * 119.99355 * 331.81675 * 11 10 9 13 13 C 1.38807 * 120.00487 * 151.82852 * 11 10 9 14 14 N 1.31624 * 119.99652 * 343.06904 * 13 11 10 15 15 Si 1.86799 * 120.00495 * 163.07302 * 13 11 10 16 16 H 1.48488 * 109.47174 * 89.99633 * 15 13 11 17 17 H 1.48500 * 109.47001 * 210.00096 * 15 13 11 18 18 H 1.48509 * 109.46743 * 329.99639 * 15 13 11 19 19 C 1.46928 * 118.73667 * 306.39019 * 10 9 8 20 20 C 1.53045 * 109.45949 * 155.00239 * 7 6 4 21 21 C 1.41614 * 120.00372 * 179.97438 * 2 1 3 22 22 C 1.37948 * 126.10410 * 295.03212 * 21 2 1 23 23 C 1.40307 * 106.52961 * 179.97438 * 22 21 2 24 24 C 1.35153 * 107.20608 * 359.97438 * 23 22 21 25 25 O 1.34021 * 109.03365 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.47479 * 270.00051 * 1 2 3 27 27 H 1.08992 * 109.47370 * 30.00297 * 1 2 3 28 28 H 1.09003 * 109.47042 * 150.00132 * 1 2 3 29 29 H 1.08003 * 120.00154 * 359.97438 * 3 2 1 30 30 H 0.97005 * 119.99830 * 0.02562 * 6 4 3 31 31 H 1.09001 * 109.45799 * 35.03273 * 7 6 4 32 32 H 1.09005 * 109.49382 * 298.57088 * 8 7 6 33 33 H 1.09000 * 109.49780 * 58.65810 * 8 7 6 34 34 H 1.09006 * 109.59013 * 294.84911 * 9 8 7 35 35 H 1.08996 * 109.70625 * 174.49147 * 9 8 7 36 36 H 0.97005 * 120.00134 * 180.02562 * 14 13 11 37 37 H 1.09002 * 109.58951 * 293.81899 * 19 10 9 38 38 H 1.09001 * 109.70390 * 173.46799 * 19 10 9 39 39 H 1.09005 * 109.49521 * 301.34199 * 20 7 6 40 40 H 1.08997 * 109.49261 * 61.40425 * 20 7 6 41 41 H 1.08003 * 126.73535 * 359.97438 * 22 21 2 42 42 H 1.08001 * 126.40097 * 179.97438 * 23 22 21 43 43 H 1.08005 * 125.48690 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1851 1.1745 0.0000 4 6 3.6006 1.1746 -0.0005 5 8 4.2095 0.1199 -0.0005 6 7 4.2745 2.3417 -0.0011 7 6 5.7395 2.3418 -0.0011 8 6 6.2494 2.2148 1.4362 9 6 7.7808 2.1804 1.4293 10 7 8.2773 3.3646 0.7153 11 6 9.1860 4.2037 1.3031 12 1 9.2139 4.3015 2.3782 13 6 10.0709 4.9289 0.5170 14 7 10.2753 4.5810 -0.7359 15 14 10.9718 6.3983 1.2372 16 1 12.2562 5.9488 1.8315 17 1 11.2425 7.3877 0.1634 18 1 10.1326 7.0265 2.2891 19 6 7.7808 3.6311 -0.6416 20 6 6.2493 3.6494 -0.6115 21 6 2.2151 -1.2264 0.0005 22 6 2.2132 -2.1657 1.0108 23 6 3.0460 -3.2115 0.5851 24 6 3.5122 -2.8784 -0.6389 25 8 3.0105 -1.6856 -0.9880 26 1 -0.3634 0.0000 1.0276 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6451 2.1099 -0.0004 30 1 3.7894 3.1818 -0.0007 31 1 6.1026 1.5000 -0.5907 32 1 5.9073 3.0692 2.0204 33 1 5.8668 1.2948 1.8781 34 1 8.1238 1.2780 0.9230 35 1 8.1533 2.1885 2.4536 36 1 10.8940 5.0874 -1.2851 37 1 8.1237 2.8471 -1.3168 38 1 8.1511 4.5970 -0.9853 39 1 5.8665 3.7503 -1.6271 40 1 5.9067 4.4902 -0.0083 41 1 1.6760 -2.1075 1.9460 42 1 3.2723 -4.1142 1.1332 43 1 4.1806 -3.4774 -1.2397 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826749265.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:45 Heat of formation + Delta-G solvation = 18.686676 kcal Electronic energy + Delta-G solvation = -24945.869724 eV Core-core repulsion = 21379.872027 eV Total energy + Delta-G solvation = -3565.997697 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.33209 -39.81825 -37.48349 -35.46451 -34.28756 -32.73983 -32.15496 -30.24671 -29.64293 -28.72674 -28.17125 -25.00585 -23.14140 -22.22677 -21.83585 -21.50769 -20.52875 -19.58298 -18.97647 -17.64962 -16.67658 -16.54534 -15.79555 -15.63976 -14.84730 -14.77623 -14.34215 -13.79925 -13.77506 -13.59434 -13.50224 -13.25782 -12.97584 -12.77635 -12.68413 -12.53551 -12.46130 -12.30225 -12.02943 -11.43905 -11.10704 -10.83537 -10.69825 -10.47438 -10.26350 -10.02191 -9.92875 -9.75608 -9.70908 -9.51290 -9.46098 -8.63104 -8.43754 -8.03198 -6.66752 -5.78602 -3.20664 0.70099 1.94009 2.72147 3.21475 3.37549 3.44598 3.46974 3.51781 3.54827 4.50335 4.62463 4.70032 5.04234 5.07848 5.13678 5.20165 5.22915 5.35531 5.41183 5.50552 5.55445 5.62934 5.72418 5.85763 5.92069 6.00378 6.03205 6.10911 6.27907 6.30761 6.38177 6.55965 6.60049 6.61659 6.63033 6.82406 6.97810 7.01999 7.25406 7.33328 7.61687 7.78173 7.82449 8.45554 8.48217 9.21818 9.85156 10.42541 11.30360 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.029069 B = 0.003019 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.992496 B = 9271.956629 C = 9657.853689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.023 3.977 3 C -0.192 4.192 4 C 0.533 3.467 5 O -0.527 6.527 6 N -0.719 5.719 7 C 0.152 3.848 8 C -0.137 4.137 9 C 0.148 3.852 10 N -0.593 5.593 11 C -0.252 4.252 12 H 0.065 0.935 13 C 0.002 3.998 14 N -0.903 5.903 15 Si 0.902 3.098 16 H -0.287 1.287 17 H -0.290 1.290 18 H -0.280 1.280 19 C 0.175 3.825 20 C -0.146 4.146 21 C 0.031 3.969 22 C -0.195 4.195 23 C -0.218 4.218 24 C -0.028 4.028 25 O -0.141 6.141 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.136 0.864 30 H 0.395 0.605 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.019 0.981 35 H 0.055 0.945 36 H 0.254 0.746 37 H 0.020 0.980 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.953 -9.217 0.278 22.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.021 3.979 3 C -0.213 4.213 4 C 0.322 3.678 5 O -0.406 6.406 6 N -0.369 5.369 7 C 0.049 3.951 8 C -0.178 4.178 9 C 0.021 3.979 10 N -0.316 5.316 11 C -0.382 4.382 12 H 0.083 0.917 13 C -0.197 4.197 14 N -0.548 5.548 15 Si 0.732 3.268 16 H -0.214 1.214 17 H -0.216 1.216 18 H -0.205 1.205 19 C 0.048 3.952 20 C -0.186 4.186 21 C -0.020 4.020 22 C -0.214 4.214 23 C -0.237 4.237 24 C -0.098 4.098 25 O -0.035 6.035 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.153 0.847 30 H 0.228 0.772 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.038 0.962 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.161 0.839 42 H 0.162 0.838 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -20.307 -9.711 -0.118 22.510 hybrid contribution 0.419 1.127 0.553 1.323 sum -19.888 -8.584 0.435 21.666 Atomic orbital electron populations 1.20925 0.89096 1.03793 1.03349 1.19216 0.95332 0.89310 0.94066 1.22304 0.94815 0.98530 1.05653 1.17094 0.88197 0.84537 0.77996 1.90863 1.70127 1.30389 1.49234 1.46261 1.08403 1.07816 1.74429 1.20999 0.77180 0.99581 0.97345 1.22351 0.99112 1.00537 0.95755 1.20865 0.90326 0.90156 0.96549 1.44091 1.48308 1.24648 1.14515 1.19182 1.09593 1.17852 0.91545 0.91696 1.25054 0.97184 1.00844 0.96604 1.70032 1.37499 1.39681 1.07569 0.86302 0.79696 0.82713 0.78099 1.21391 1.21566 1.20504 1.20726 0.86257 1.01891 0.86278 1.22531 1.01646 0.95457 0.98992 1.19264 0.96589 0.95714 0.90404 1.21899 1.05050 0.94397 1.00060 1.21539 1.03442 1.01595 0.97104 1.24005 1.01493 0.86242 0.98033 1.84163 1.48170 1.30555 1.40624 0.89848 0.90193 0.90664 0.84655 0.77179 0.90129 0.92450 0.92825 0.96273 0.92630 0.93619 0.96179 0.89074 0.92807 0.92232 0.83945 0.83848 0.78667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.02 36.00 0.36 -0.41 16 2 C 0.02 0.26 5.78 -104.27 -0.60 -0.35 16 3 C -0.19 -2.19 9.49 -39.25 -0.37 -2.56 16 4 C 0.53 8.20 7.49 -15.00 -0.11 8.09 16 5 O -0.53 -10.05 12.47 -18.26 -0.23 -10.28 16 6 N -0.72 -10.54 5.07 -56.68 -0.29 -10.83 16 7 C 0.15 2.76 2.41 -67.89 -0.16 2.59 16 8 C -0.14 -2.62 5.65 -26.62 -0.15 -2.77 16 9 C 0.15 3.29 6.52 -3.72 -0.02 3.26 16 10 N -0.59 -15.10 2.99 -172.32 -0.52 -15.62 16 11 C -0.25 -6.98 9.58 -15.06 -0.14 -7.13 16 12 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 13 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 14 N -0.90 -26.29 11.19 55.49 0.62 -25.67 16 15 Si 0.90 21.67 29.59 -169.99 -5.03 16.65 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.18 4.18 5.30 -3.71 -0.02 4.16 16 20 C -0.15 -2.75 5.55 -26.61 -0.15 -2.89 16 21 C 0.03 0.42 4.37 -38.40 -0.17 0.26 16 22 C -0.19 -2.48 10.90 -38.91 -0.42 -2.91 16 23 C -0.22 -2.68 10.87 -39.90 -0.43 -3.12 16 24 C -0.03 -0.36 12.06 29.63 0.36 -0.01 16 25 O -0.14 -2.17 8.91 -18.68 -0.17 -2.34 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.40 8.08 -51.93 -0.42 -0.02 16 28 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 29 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 30 H 0.39 4.58 8.56 -40.82 -0.35 4.24 16 31 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 36 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.09 2.41 6.07 -51.93 -0.31 2.09 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 42 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.20 1.84 8.06 -52.48 -0.42 1.41 16 LS Contribution 354.18 15.07 5.34 5.34 Total: -1.00 -33.71 354.18 -8.91 -42.62 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.51 Total: 3.94 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -2.13 Total: -3.81 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.18 Total: -52.11 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.39 Total: -12.62 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.71 -8.91 -42.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826749265.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.304 kcal (2) G-P(sol) polarization free energy of solvation -33.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds