Wall clock time and date at job start Tue Mar 31 2020 09:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35624 * 120.00151 * 2 1 4 4 C 1.41550 * 120.00458 * 180.02562 * 3 2 1 5 5 O 1.21784 * 119.99801 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00405 * 179.97438 * 4 3 2 7 7 C 1.46502 * 120.00227 * 179.97438 * 6 4 3 8 8 C 1.53036 * 109.46521 * 275.07258 * 7 6 4 9 9 C 1.53181 * 109.31613 * 178.61277 * 8 7 6 10 10 N 1.46926 * 108.77632 * 54.63695 * 9 8 7 11 11 C 1.36939 * 120.63488 * 126.41670 * 10 9 8 12 12 H 1.07997 * 119.99355 * 331.81675 * 11 10 9 13 13 C 1.38807 * 120.00487 * 151.82852 * 11 10 9 14 14 N 1.31624 * 119.99652 * 343.06904 * 13 11 10 15 15 Si 1.86799 * 120.00495 * 163.07302 * 13 11 10 16 16 H 1.48488 * 109.47174 * 89.99633 * 15 13 11 17 17 H 1.48500 * 109.47001 * 210.00096 * 15 13 11 18 18 H 1.48509 * 109.46743 * 329.99639 * 15 13 11 19 19 C 1.46928 * 118.73667 * 306.39019 * 10 9 8 20 20 C 1.53045 * 109.45949 * 155.00239 * 7 6 4 21 21 C 1.41614 * 120.00372 * 179.97438 * 2 1 3 22 22 C 1.37948 * 126.10410 * 295.03212 * 21 2 1 23 23 C 1.40307 * 106.52961 * 179.97438 * 22 21 2 24 24 C 1.35153 * 107.20608 * 359.97438 * 23 22 21 25 25 O 1.34021 * 109.03365 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.47479 * 270.00051 * 1 2 3 27 27 H 1.08992 * 109.47370 * 30.00297 * 1 2 3 28 28 H 1.09003 * 109.47042 * 150.00132 * 1 2 3 29 29 H 1.08003 * 120.00154 * 359.97438 * 3 2 1 30 30 H 0.97005 * 119.99830 * 0.02562 * 6 4 3 31 31 H 1.09001 * 109.45799 * 35.03273 * 7 6 4 32 32 H 1.09005 * 109.49382 * 298.57088 * 8 7 6 33 33 H 1.09000 * 109.49780 * 58.65810 * 8 7 6 34 34 H 1.09006 * 109.59013 * 294.84911 * 9 8 7 35 35 H 1.08996 * 109.70625 * 174.49147 * 9 8 7 36 36 H 0.97005 * 120.00134 * 180.02562 * 14 13 11 37 37 H 1.09002 * 109.58951 * 293.81899 * 19 10 9 38 38 H 1.09001 * 109.70390 * 173.46799 * 19 10 9 39 39 H 1.09005 * 109.49521 * 301.34199 * 20 7 6 40 40 H 1.08997 * 109.49261 * 61.40425 * 20 7 6 41 41 H 1.08003 * 126.73535 * 359.97438 * 22 21 2 42 42 H 1.08001 * 126.40097 * 179.97438 * 23 22 21 43 43 H 1.08005 * 125.48690 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1851 1.1745 0.0000 4 6 3.6006 1.1746 -0.0005 5 8 4.2095 0.1199 -0.0005 6 7 4.2745 2.3417 -0.0011 7 6 5.7395 2.3418 -0.0011 8 6 6.2494 2.2148 1.4362 9 6 7.7808 2.1804 1.4293 10 7 8.2773 3.3646 0.7153 11 6 9.1860 4.2037 1.3031 12 1 9.2139 4.3015 2.3782 13 6 10.0709 4.9289 0.5170 14 7 10.2753 4.5810 -0.7359 15 14 10.9718 6.3983 1.2372 16 1 12.2562 5.9488 1.8315 17 1 11.2425 7.3877 0.1634 18 1 10.1326 7.0265 2.2891 19 6 7.7808 3.6311 -0.6416 20 6 6.2493 3.6494 -0.6115 21 6 2.2151 -1.2264 0.0005 22 6 2.2132 -2.1657 1.0108 23 6 3.0460 -3.2115 0.5851 24 6 3.5122 -2.8784 -0.6389 25 8 3.0105 -1.6856 -0.9880 26 1 -0.3634 0.0000 1.0276 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6451 2.1099 -0.0004 30 1 3.7894 3.1818 -0.0007 31 1 6.1026 1.5000 -0.5907 32 1 5.9073 3.0692 2.0204 33 1 5.8668 1.2948 1.8781 34 1 8.1238 1.2780 0.9230 35 1 8.1533 2.1885 2.4536 36 1 10.8940 5.0874 -1.2851 37 1 8.1237 2.8471 -1.3168 38 1 8.1511 4.5970 -0.9853 39 1 5.8665 3.7503 -1.6271 40 1 5.9067 4.4902 -0.0083 41 1 1.6760 -2.1075 1.9460 42 1 3.2723 -4.1142 1.1332 43 1 4.1806 -3.4774 -1.2397 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826749265.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:45 Heat of formation + Delta-G solvation = -1.701737 kcal Electronic energy + Delta-G solvation = -24946.753832 eV Core-core repulsion = 21379.872027 eV Total energy + Delta-G solvation = -3566.881805 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.30463 -41.06092 -39.09714 -36.50512 -35.77422 -33.96856 -33.70107 -31.92493 -31.37604 -29.67003 -29.09719 -26.83821 -24.39301 -23.90586 -23.25691 -22.47761 -21.75193 -21.13571 -20.11555 -19.02375 -18.35429 -17.63394 -17.00202 -16.79871 -16.66561 -15.98322 -15.79839 -15.40445 -15.25166 -14.79393 -14.70304 -14.48613 -14.14688 -14.05457 -13.91420 -13.71354 -13.44630 -13.28033 -13.21243 -13.02389 -12.72868 -12.62460 -12.53200 -12.24884 -12.03980 -11.90404 -11.57848 -11.38501 -10.96365 -10.73175 -10.57683 -10.38549 -9.91102 -8.99759 -8.73125 -7.89604 -5.35887 -0.19364 0.98274 1.47758 1.48625 1.59154 1.77623 2.22758 2.35856 2.50837 2.53084 3.26552 3.62329 3.80634 3.85284 3.94065 4.04171 4.18244 4.26071 4.30557 4.37540 4.43079 4.51805 4.61289 4.78473 4.79148 4.80922 4.84505 4.95025 4.99454 5.02082 5.05087 5.12496 5.14468 5.25608 5.31715 5.43442 5.45911 5.58527 5.62369 5.68165 5.71854 6.28936 6.36761 6.67742 7.12167 7.35153 7.81182 8.34863 9.17663 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.029069 B = 0.003019 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.992496 B = 9271.956629 C = 9657.853689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.029 3.971 3 C -0.205 4.205 4 C 0.527 3.473 5 O -0.571 6.571 6 N -0.708 5.708 7 C 0.166 3.834 8 C -0.120 4.120 9 C 0.146 3.854 10 N -0.609 5.609 11 C -0.267 4.267 12 H 0.068 0.932 13 C -0.049 4.049 14 N -0.936 5.936 15 Si 0.971 3.029 16 H -0.286 1.286 17 H -0.290 1.290 18 H -0.268 1.268 19 C 0.180 3.820 20 C -0.128 4.128 21 C 0.009 3.991 22 C -0.207 4.207 23 C -0.226 4.226 24 C -0.049 4.049 25 O -0.169 6.169 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.178 0.822 30 H 0.414 0.586 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.003 0.997 35 H 0.057 0.943 36 H 0.251 0.749 37 H -0.009 1.009 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.162 0.838 42 H 0.165 0.835 43 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.538 -8.253 1.324 24.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.026 3.974 3 C -0.225 4.225 4 C 0.318 3.682 5 O -0.453 6.453 6 N -0.359 5.359 7 C 0.060 3.940 8 C -0.160 4.160 9 C 0.019 3.981 10 N -0.332 5.332 11 C -0.397 4.397 12 H 0.085 0.915 13 C -0.245 4.245 14 N -0.582 5.582 15 Si 0.799 3.201 16 H -0.213 1.213 17 H -0.217 1.217 18 H -0.193 1.193 19 C 0.053 3.947 20 C -0.167 4.167 21 C -0.041 4.041 22 C -0.226 4.226 23 C -0.245 4.245 24 C -0.117 4.117 25 O -0.064 6.064 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.094 0.906 29 H 0.196 0.804 30 H 0.251 0.749 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.021 0.979 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.009 0.991 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.180 0.820 42 H 0.183 0.817 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -22.943 -8.736 0.944 24.568 hybrid contribution 1.247 0.678 0.233 1.438 sum -21.696 -8.059 1.177 23.174 Atomic orbital electron populations 1.21041 0.85682 1.05058 1.04878 1.19800 0.97463 0.88080 0.92016 1.22381 0.92420 1.00559 1.07167 1.17771 0.89884 0.83707 0.76817 1.90855 1.71354 1.31906 1.51222 1.45964 1.06643 1.08924 1.74380 1.20548 0.79494 0.97903 0.96009 1.22126 0.96366 1.00903 0.96633 1.20943 0.92637 0.88488 0.96004 1.44346 1.48468 1.25426 1.14983 1.19525 1.10002 1.18245 0.91909 0.91479 1.25850 0.98227 1.03403 0.97003 1.70195 1.38322 1.40774 1.08876 0.85230 0.78340 0.79163 0.77408 1.21321 1.21652 1.19271 1.20548 0.89700 0.99244 0.85165 1.22250 0.97554 0.96214 1.00729 1.19947 0.96664 0.97009 0.90485 1.22271 1.05286 0.94363 1.00673 1.21918 1.03099 1.02355 0.97079 1.24612 1.02052 0.86081 0.98990 1.84136 1.48949 1.31557 1.41760 0.87883 0.87748 0.90571 0.80422 0.74942 0.93102 0.91470 0.92725 0.97901 0.92444 0.93965 0.99069 0.91758 0.90630 0.90962 0.82033 0.81749 0.76489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.02 71.23 0.71 -0.36 16 2 C 0.03 0.57 5.78 -19.64 -0.11 0.46 16 3 C -0.21 -4.10 9.49 22.48 0.21 -3.89 16 4 C 0.53 15.50 7.49 85.06 0.64 16.14 16 5 O -0.57 -21.88 12.47 17.73 0.22 -21.66 16 6 N -0.71 -19.38 5.07 -451.41 -2.29 -21.67 16 7 C 0.17 5.89 2.41 45.02 0.11 6.00 16 8 C -0.12 -4.51 5.65 30.67 0.17 -4.34 16 9 C 0.15 6.57 6.52 86.36 0.56 7.14 16 10 N -0.61 -31.56 2.99 -699.11 -2.09 -33.65 16 11 C -0.27 -14.90 9.58 84.03 0.81 -14.10 16 12 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 13 C -0.05 -2.78 4.92 84.86 0.42 -2.36 16 14 N -0.94 -55.79 11.19 21.65 0.24 -55.55 16 15 Si 0.97 44.77 29.59 68.60 2.03 46.80 16 16 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 17 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 C 0.18 8.81 5.30 86.36 0.46 9.26 16 20 C -0.13 -4.69 5.55 30.67 0.17 -4.52 16 21 C 0.01 0.24 4.37 23.03 0.10 0.34 16 22 C -0.21 -5.08 10.90 22.70 0.25 -4.83 16 23 C -0.23 -5.45 10.87 22.06 0.24 -5.21 16 24 C -0.05 -1.27 12.06 67.11 0.81 -0.46 16 25 O -0.17 -5.25 8.91 16.23 0.14 -5.11 16 26 H 0.10 0.66 8.14 -2.39 -0.02 0.65 16 27 H 0.10 0.55 8.08 -2.39 -0.02 0.53 16 28 H 0.08 0.76 8.10 -2.39 -0.02 0.74 16 29 H 0.18 1.90 8.06 -2.91 -0.02 1.87 16 30 H 0.41 8.26 8.56 -92.70 -0.79 7.46 16 31 H 0.05 2.14 7.58 -2.39 -0.02 2.13 16 32 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 33 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.00 0.14 8.14 -2.38 -0.02 0.13 16 35 H 0.06 2.52 7.93 -2.39 -0.02 2.50 16 36 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 37 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 38 H 0.06 3.49 6.07 -2.39 -0.01 3.48 16 39 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 40 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 42 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 43 H 0.22 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -75.75 354.18 4.01 -71.73 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.21 Total: 19.80 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 5.54 Total: -0.71 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -4.14 Total: -110.86 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: 0.37 Total: -26.77 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -75.75 4.01 -71.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826749265.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.033 kcal (2) G-P(sol) polarization free energy of solvation -75.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds