Wall clock time and date at job start Tue Mar 31 2020 09:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35619 * 119.99545 * 2 1 4 4 C 1.41554 * 120.00191 * 7.20089 * 3 2 1 5 5 O 1.21777 * 119.99969 * 4.86116 * 4 3 2 6 6 N 1.34777 * 119.99853 * 184.86054 * 4 3 2 7 7 C 1.46503 * 119.99641 * 180.02562 * 6 4 3 8 8 C 1.53045 * 109.45809 * 275.06343 * 7 6 4 9 9 C 1.53194 * 109.31278 * 178.61500 * 8 7 6 10 10 N 1.46928 * 108.77059 * 54.64016 * 9 8 7 11 11 C 1.36938 * 120.62902 * 126.41413 * 10 9 8 12 12 H 1.07994 * 120.00127 * 326.06199 * 11 10 9 13 13 C 1.38818 * 119.99944 * 146.05952 * 11 10 9 14 14 N 1.31620 * 119.99956 * 345.05746 * 13 11 10 15 15 Si 1.86795 * 119.99684 * 165.05571 * 13 11 10 16 16 H 1.48497 * 109.47539 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46978 * 120.00272 * 15 13 11 18 18 H 1.48507 * 109.47061 * 240.00053 * 15 13 11 19 19 C 1.46926 * 118.74025 * 306.38461 * 10 9 8 20 20 C 1.53039 * 109.46080 * 155.00146 * 7 6 4 21 21 C 1.41608 * 120.00283 * 180.02562 * 2 1 3 22 22 C 1.37951 * 126.10496 * 294.71261 * 21 2 1 23 23 C 1.40313 * 106.52772 * 179.90733 * 22 21 2 24 24 C 1.35150 * 107.20583 * 0.35162 * 23 22 21 25 25 O 1.34010 * 109.03763 * 359.77941 * 24 23 22 26 26 H 1.09002 * 109.46927 * 174.78780 * 1 2 3 27 27 H 1.08995 * 109.47374 * 54.78889 * 1 2 3 28 28 H 1.09004 * 109.47399 * 294.78120 * 1 2 3 29 29 H 1.08004 * 120.00258 * 187.19498 * 3 2 1 30 30 H 0.96994 * 120.00373 * 359.97438 * 6 4 3 31 31 H 1.08995 * 109.46176 * 35.02529 * 7 6 4 32 32 H 1.09000 * 109.49589 * 298.57069 * 8 7 6 33 33 H 1.09001 * 109.49258 * 58.66788 * 8 7 6 34 34 H 1.08997 * 109.58718 * 294.84993 * 9 8 7 35 35 H 1.08995 * 109.70131 * 174.49136 * 9 8 7 36 36 H 0.96995 * 119.99757 * 180.02562 * 14 13 11 37 37 H 1.08994 * 109.58997 * 293.82760 * 19 10 9 38 38 H 1.09002 * 109.70278 * 173.46825 * 19 10 9 39 39 H 1.09006 * 109.49700 * 301.33362 * 20 7 6 40 40 H 1.09005 * 109.50176 * 61.43021 * 20 7 6 41 41 H 1.08001 * 126.73310 * 0.02562 * 22 21 2 42 42 H 1.08003 * 126.39507 * 180.15164 * 23 22 21 43 43 H 1.08006 * 125.48378 * 179.77433 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1850 1.1745 0.0000 4 6 1.4855 2.3956 0.1537 5 8 0.2880 2.3877 0.3743 6 7 2.1451 3.5669 0.0558 7 6 1.4212 4.8306 0.2154 8 6 0.7999 5.2348 -1.1236 9 6 0.0151 6.5383 -0.9450 10 7 0.9066 7.5510 -0.3632 11 6 1.0642 8.7706 -0.9656 12 1 1.0301 8.8496 -2.0421 13 6 1.2678 9.9055 -0.1925 14 7 1.0208 9.8743 1.1000 15 14 1.8923 11.4767 -0.9865 16 1 2.0915 11.2512 -2.4407 17 1 0.8988 12.5619 -0.7849 18 1 3.1836 11.8660 -0.3650 19 6 1.6253 7.2305 0.8776 20 6 2.3920 5.9192 0.6786 21 6 2.2151 -1.2263 -0.0005 22 6 2.2181 -2.1637 1.0115 23 6 3.0476 -3.2111 0.5830 24 6 3.5138 -2.8768 -0.6407 25 8 3.0120 -1.6840 -0.9887 26 1 -0.3633 -1.0234 -0.0934 27 1 -0.3634 0.5925 -0.8396 28 1 -0.3634 0.4308 0.9331 29 1 3.2587 1.1784 -0.1171 30 1 3.0990 3.5732 -0.1196 31 1 0.6334 4.7065 0.9583 32 1 1.5891 5.3833 -1.8607 33 1 0.1264 4.4485 -1.4642 34 1 -0.8293 6.3679 -0.2773 35 1 -0.3482 6.8840 -1.9127 36 1 1.1627 10.6674 1.6400 37 1 0.9122 7.1165 1.6939 38 1 2.3261 8.0313 1.1137 39 1 2.8516 5.6200 1.6206 40 1 3.1661 6.0613 -0.0756 41 1 1.6848 -2.1041 1.9488 42 1 3.2741 -4.1142 1.1305 43 1 4.1832 -3.4748 -1.2414 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826749266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:49 Heat of formation + Delta-G solvation = 14.673927 kcal Electronic energy + Delta-G solvation = -24260.221346 eV Core-core repulsion = 20694.049643 eV Total energy + Delta-G solvation = -3566.171703 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.82362 -40.02441 -37.55790 -35.40071 -34.28566 -33.24883 -32.19144 -30.26223 -29.74110 -29.02958 -27.85676 -25.05324 -23.63017 -22.25931 -21.98293 -21.83941 -20.51666 -19.73092 -19.01016 -17.45308 -17.09934 -16.57969 -16.33175 -15.66004 -15.07938 -14.78645 -14.70712 -14.04538 -13.78252 -13.55465 -13.42702 -13.25524 -13.12696 -12.92071 -12.80241 -12.65146 -12.43434 -12.33140 -11.93549 -11.42460 -11.13585 -10.84082 -10.74359 -10.45812 -10.29742 -10.25010 -10.05255 -9.83603 -9.71993 -9.60637 -9.40535 -8.71451 -8.52351 -8.44288 -6.59558 -5.80068 -3.28008 0.62083 1.41343 2.25128 2.76022 3.35951 3.39540 3.44220 3.46646 3.54923 4.44155 4.48993 4.61524 4.73571 4.77382 5.12422 5.27216 5.35467 5.41045 5.46257 5.50209 5.52808 5.61460 5.67942 5.72165 5.83459 5.90682 6.02333 6.09245 6.13196 6.27103 6.31184 6.38140 6.54049 6.58542 6.61477 6.72396 6.83237 6.94586 7.02549 7.28822 7.55468 7.75323 7.81937 8.40319 8.48551 9.21529 9.82987 10.43948 11.28677 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.041017 B = 0.002417 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.481292 B =11583.869442 C =11719.317279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.029 3.971 3 C -0.190 4.190 4 C 0.541 3.459 5 O -0.539 6.539 6 N -0.719 5.719 7 C 0.151 3.849 8 C -0.138 4.138 9 C 0.148 3.852 10 N -0.592 5.592 11 C -0.256 4.256 12 H 0.063 0.937 13 C 0.007 3.993 14 N -0.900 5.900 15 Si 0.901 3.099 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.289 1.289 19 C 0.178 3.822 20 C -0.147 4.147 21 C 0.006 3.994 22 C -0.180 4.180 23 C -0.212 4.212 24 C -0.039 4.039 25 O -0.162 6.162 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.127 0.873 30 H 0.396 0.604 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.020 0.980 35 H 0.056 0.944 36 H 0.254 0.746 37 H 0.023 0.977 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.567 -24.426 -1.191 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.027 3.973 3 C -0.211 4.211 4 C 0.331 3.669 5 O -0.420 6.420 6 N -0.369 5.369 7 C 0.048 3.952 8 C -0.178 4.178 9 C 0.021 3.979 10 N -0.314 5.314 11 C -0.386 4.386 12 H 0.081 0.919 13 C -0.193 4.193 14 N -0.544 5.544 15 Si 0.731 3.269 16 H -0.202 1.202 17 H -0.216 1.216 18 H -0.215 1.215 19 C 0.052 3.948 20 C -0.187 4.187 21 C -0.044 4.044 22 C -0.199 4.199 23 C -0.231 4.231 24 C -0.107 4.107 25 O -0.058 6.058 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.145 0.855 30 H 0.229 0.771 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.041 0.959 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.171 0.829 42 H 0.169 0.831 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.776 -24.087 -1.186 24.585 hybrid contribution 1.108 0.617 -0.256 1.294 sum 5.884 -23.470 -1.442 24.239 Atomic orbital electron populations 1.21026 0.88356 1.01509 1.05155 1.19221 0.96107 0.88251 0.93749 1.22169 1.00865 0.92615 1.05436 1.16928 0.87438 0.84328 0.78215 1.90834 1.14559 1.87899 1.48684 1.46295 1.12230 1.06300 1.72045 1.21026 0.94878 0.81195 0.98124 1.22370 1.00021 0.98997 0.96449 1.20887 0.91738 0.87954 0.97347 1.44023 1.47900 1.12473 1.27043 1.19162 1.45116 0.83664 0.90649 0.91919 1.25217 1.00516 0.97549 0.95969 1.70028 1.50389 1.28743 1.05191 0.86245 0.78281 0.83461 0.78897 1.20182 1.21635 1.21545 1.20640 0.94280 0.91803 0.88112 1.22534 0.98572 0.97692 0.99895 1.19829 0.98292 0.96927 0.89351 1.22179 1.03573 0.93712 1.00439 1.21739 1.02719 1.01591 0.97095 1.24231 1.02295 0.86187 0.98016 1.84192 1.49304 1.31360 1.40910 0.92681 0.89432 0.88571 0.85460 0.77073 0.89923 0.92434 0.92727 0.96198 0.92574 0.93631 0.95938 0.90031 0.92779 0.92195 0.82896 0.83090 0.77905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.18 8.31 36.01 0.30 -0.88 16 2 C 0.03 0.33 5.77 -104.27 -0.60 -0.27 16 3 C -0.19 -2.24 9.46 -39.26 -0.37 -2.61 16 4 C 0.54 7.85 7.47 -15.00 -0.11 7.74 16 5 O -0.54 -9.33 12.77 5.12 0.07 -9.26 16 6 N -0.72 -10.17 5.07 -56.67 -0.29 -10.46 16 7 C 0.15 2.63 2.42 -67.89 -0.16 2.47 16 8 C -0.14 -2.54 5.65 -26.61 -0.15 -2.69 16 9 C 0.15 3.21 6.52 -3.71 -0.02 3.18 16 10 N -0.59 -14.84 2.96 -172.32 -0.51 -15.35 16 11 C -0.26 -7.02 9.52 -15.06 -0.14 -7.17 16 12 H 0.06 1.70 7.87 -52.49 -0.41 1.29 16 13 C 0.01 0.19 4.92 -17.43 -0.09 0.11 16 14 N -0.90 -26.10 11.52 55.49 0.64 -25.46 16 15 Si 0.90 21.56 29.58 -169.99 -5.03 16.53 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 19 C 0.18 4.18 5.26 -3.71 -0.02 4.16 16 20 C -0.15 -2.68 5.55 -26.61 -0.15 -2.83 16 21 C 0.01 0.06 6.29 -38.40 -0.24 -0.18 16 22 C -0.18 -1.67 10.90 -38.91 -0.42 -2.10 16 23 C -0.21 -1.63 10.87 -39.90 -0.43 -2.07 16 24 C -0.04 -0.29 12.06 29.63 0.36 0.07 16 25 O -0.16 -1.69 10.67 4.69 0.05 -1.64 16 26 H 0.05 0.52 7.97 -51.93 -0.41 0.11 16 27 H 0.09 1.09 7.48 -51.93 -0.39 0.70 16 28 H 0.10 1.18 7.03 -51.93 -0.36 0.82 16 29 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 30 H 0.40 4.55 8.56 -40.82 -0.35 4.20 16 31 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 36 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 2.11 6.46 -51.93 -0.34 1.78 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 42 H 0.15 0.79 8.06 -52.48 -0.42 0.37 16 43 H 0.20 0.71 8.06 -52.48 -0.42 0.29 16 LS Contribution 355.12 15.07 5.35 5.35 Total: -1.00 -31.74 355.12 -8.42 -40.15 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -6.43 Total: 3.21 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -2.26 Total: -3.07 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.16 Total: -51.27 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.12 Total: -10.91 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.74 -8.42 -40.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826749266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.827 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds