Wall clock time and date at job start Tue Mar 31 2020 09:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35619 * 119.99605 * 2 1 4 4 C 1.41560 * 120.00212 * 8.61587 * 3 2 1 5 5 O 1.21775 * 119.99783 * 3.24543 * 4 3 2 6 6 N 1.34779 * 120.00156 * 183.24398 * 4 3 2 7 7 C 1.47081 * 120.87750 * 354.85386 * 6 4 3 8 8 C 1.53695 * 108.27649 * 128.75646 * 7 6 4 9 9 N 1.46898 * 109.26072 * 54.07298 * 8 7 6 10 10 C 1.46900 * 111.00195 * 172.60415 * 9 8 7 11 11 C 1.50703 * 109.46414 * 59.35958 * 10 9 8 12 12 H 1.08002 * 120.00126 * 5.04975 * 11 10 9 13 13 C 1.37884 * 119.99735 * 185.05784 * 11 10 9 14 14 N 1.31512 * 119.99680 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99987 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47309 * 59.99574 * 15 13 11 17 17 H 1.48497 * 109.47371 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47142 * 299.99358 * 15 13 11 19 19 C 1.46894 * 111.27419 * 296.76516 * 9 8 7 20 20 C 1.47072 * 120.88220 * 175.12814 * 6 4 3 21 21 C 1.41609 * 120.00235 * 179.97438 * 2 1 3 22 22 C 1.37949 * 126.10298 * 294.71218 * 21 2 1 23 23 C 1.40313 * 106.52926 * 179.90598 * 22 21 2 24 24 C 1.35157 * 107.20246 * 0.36172 * 23 22 21 25 25 O 1.34017 * 109.03575 * 359.77178 * 24 23 22 26 26 H 1.09003 * 109.47018 * 275.88375 * 1 2 3 27 27 H 1.09004 * 109.46723 * 155.88575 * 1 2 3 28 28 H 1.08993 * 109.47223 * 35.88935 * 1 2 3 29 29 H 1.07997 * 119.99998 * 188.61694 * 3 2 1 30 30 H 1.09000 * 109.62551 * 248.51972 * 7 6 4 31 31 H 1.08996 * 109.63235 * 9.09976 * 7 6 4 32 32 H 1.09012 * 109.64691 * 294.07625 * 8 7 6 33 33 H 1.09001 * 109.42266 * 173.94448 * 8 7 6 34 34 H 1.08996 * 109.46917 * 179.34990 * 10 9 8 35 35 H 1.08991 * 109.47672 * 299.35978 * 10 9 8 36 36 H 0.97009 * 119.99690 * 180.02562 * 14 13 11 37 37 H 1.08999 * 109.49098 * 303.14021 * 19 9 8 38 38 H 1.09002 * 109.49501 * 183.06064 * 19 9 8 39 39 H 1.09000 * 109.62928 * 350.89910 * 20 6 4 40 40 H 1.09003 * 109.62884 * 111.47969 * 20 6 4 41 41 H 1.07996 * 126.73440 * 0.02562 * 22 21 2 42 42 H 1.07997 * 126.40070 * 180.14938 * 23 22 21 43 43 H 1.08005 * 125.48069 * 179.77861 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1851 1.1745 0.0000 4 6 1.4892 2.3935 0.1837 5 8 0.2910 2.3839 0.4005 6 7 2.1529 3.5648 0.1185 7 6 3.6158 3.5962 -0.0302 8 6 3.9609 4.5221 -1.2074 9 7 3.3304 5.8318 -0.9948 10 6 3.7758 6.8008 -2.0050 11 6 3.4175 6.2948 -3.3786 12 1 2.8385 5.3895 -3.4865 13 6 3.8290 6.9875 -4.4975 14 7 4.5337 8.0901 -4.3659 15 14 3.3855 6.3600 -6.2000 16 1 1.9080 6.3024 -6.3370 17 1 3.9418 7.2778 -7.2264 18 1 3.9537 5.0013 -6.3904 19 6 1.8656 5.7220 -0.9803 20 6 1.4340 4.8453 0.2001 21 6 2.2152 -1.2263 0.0005 22 6 2.2181 -2.1628 1.0135 23 6 3.0476 -3.2106 0.5860 24 6 3.5140 -2.8773 -0.6380 25 8 3.0122 -1.6847 -0.9871 26 1 -0.3633 0.1053 1.0223 27 1 -0.3633 -0.9380 -0.4199 28 1 -0.3633 0.8325 -0.6024 29 1 3.2559 1.1799 -0.1401 30 1 4.0686 3.9780 0.8848 31 1 3.9850 2.5909 -0.2329 32 1 3.5916 4.0872 -2.1362 33 1 5.0423 4.6445 -1.2673 34 1 3.2851 7.7584 -1.8312 35 1 4.8560 6.9280 -1.9351 36 1 4.8229 8.5777 -5.1531 37 1 1.5255 5.2704 -1.9122 38 1 1.4275 6.7146 -0.8755 39 1 0.3600 4.6662 0.1498 40 1 1.6812 5.3449 1.1369 41 1 1.6848 -2.1023 1.9507 42 1 3.2741 -4.1131 1.1342 43 1 4.1833 -3.4759 -1.2382 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827479708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:04 Heat of formation + Delta-G solvation = 18.160318 kcal Electronic energy + Delta-G solvation = -24733.648695 eV Core-core repulsion = 21167.628173 eV Total energy + Delta-G solvation = -3566.020522 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.75213 -40.22355 -37.79696 -35.31789 -34.43529 -33.18542 -32.37257 -30.89991 -29.26132 -28.60929 -27.45028 -25.34077 -23.82007 -23.01488 -22.18661 -21.90769 -20.72351 -19.61348 -18.43080 -17.55166 -16.98921 -16.35535 -16.29097 -15.51340 -15.11349 -15.03332 -14.73701 -14.39724 -13.88704 -13.78397 -13.60139 -13.36656 -13.18488 -13.05600 -12.82470 -12.57716 -12.42270 -12.33020 -11.84365 -11.68698 -11.15899 -11.06036 -10.95105 -10.66704 -10.62237 -10.26966 -10.22700 -9.93366 -9.70659 -9.61588 -9.43915 -8.58486 -8.48344 -8.29097 -7.28131 -6.08344 -4.17944 0.67303 1.47835 2.31438 2.81230 3.25494 3.29476 3.30670 3.33428 3.39124 4.36384 4.46496 4.65758 4.73134 4.79534 4.91252 5.05214 5.21864 5.29588 5.36461 5.45668 5.50017 5.54659 5.59864 5.70388 5.74750 5.76671 5.87545 5.93772 5.98671 6.06237 6.14718 6.21056 6.36069 6.42086 6.59972 6.69401 6.77327 6.80392 7.18008 7.45321 7.60479 7.83511 7.94431 8.16729 8.21769 8.30786 8.91670 9.49493 10.96745 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.016131 B = 0.003412 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.356547 B = 8203.612532 C = 9020.238811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.029 3.971 3 C -0.191 4.191 4 C 0.545 3.455 5 O -0.547 6.547 6 N -0.601 5.601 7 C 0.106 3.894 8 C 0.050 3.950 9 N -0.541 5.541 10 C 0.188 3.812 11 C -0.553 4.553 12 H 0.055 0.945 13 C 0.067 3.933 14 N -0.890 5.890 15 Si 0.889 3.111 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.277 1.277 19 C 0.049 3.951 20 C 0.117 3.883 21 C 0.006 3.994 22 C -0.180 4.180 23 C -0.214 4.214 24 C -0.037 4.037 25 O -0.161 6.161 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.134 0.866 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.029 0.971 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.041 0.959 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.561 -19.186 10.692 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.027 3.973 3 C -0.211 4.211 4 C 0.338 3.662 5 O -0.429 6.429 6 N -0.333 5.333 7 C -0.017 4.017 8 C -0.079 4.079 9 N -0.265 5.265 10 C 0.063 3.937 11 C -0.592 4.592 12 H 0.073 0.927 13 C -0.136 4.136 14 N -0.528 5.528 15 Si 0.716 3.284 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.203 1.203 19 C -0.080 4.080 20 C -0.006 4.006 21 C -0.044 4.044 22 C -0.199 4.199 23 C -0.233 4.233 24 C -0.106 4.106 25 O -0.056 6.056 26 H 0.103 0.897 27 H 0.075 0.925 28 H 0.118 0.882 29 H 0.152 0.848 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.170 0.830 42 H 0.169 0.831 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.872 -18.660 10.889 21.795 hybrid contribution -0.054 -0.716 -1.835 1.971 sum -2.925 -19.376 9.054 21.586 Atomic orbital electron populations 1.21127 0.88488 1.02859 1.04042 1.19223 0.96036 0.88289 0.93799 1.22262 1.01377 0.92380 1.05090 1.16886 0.87013 0.84159 0.78156 1.90774 1.14746 1.87522 1.49903 1.48110 1.08158 1.05986 1.71041 1.22201 0.79219 1.00241 1.00077 1.22311 0.99936 0.90375 0.95298 1.62483 1.05239 1.08119 1.50680 1.19759 0.96681 0.90386 0.86895 1.21701 1.35049 1.10154 0.92295 0.92671 1.24949 0.94740 0.94778 0.99171 1.69930 1.36624 1.16223 1.30034 0.86710 0.78865 0.78766 0.84026 1.20234 1.21114 1.20256 1.22265 0.90515 0.99131 0.96125 1.21819 0.97047 0.82463 0.99258 1.19837 0.98251 0.96896 0.89370 1.22139 1.03687 0.93746 1.00374 1.21726 1.02835 1.01597 0.97121 1.24247 1.02188 0.86161 0.97972 1.84215 1.49208 1.31320 1.40867 0.89747 0.92532 0.88184 0.84848 0.90845 0.90151 0.93703 0.90295 0.95280 0.94568 0.92676 0.94047 0.90347 0.89438 0.91341 0.82981 0.83115 0.77904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 8.42 36.01 0.30 -1.00 16 2 C 0.03 0.36 5.77 -104.27 -0.60 -0.24 16 3 C -0.19 -2.55 8.87 -39.25 -0.35 -2.90 16 4 C 0.55 8.54 7.37 -14.99 -0.11 8.43 16 5 O -0.55 -9.49 12.61 5.12 0.06 -9.43 16 6 N -0.60 -9.46 3.00 -175.61 -0.53 -9.99 16 7 C 0.11 1.53 6.53 -3.36 -0.02 1.51 16 8 C 0.05 0.92 5.17 -3.46 -0.02 0.90 16 9 N -0.54 -11.09 4.83 -235.47 -1.14 -12.23 16 10 C 0.19 4.69 5.11 -4.97 -0.03 4.66 16 11 C -0.55 -14.90 7.75 -34.44 -0.27 -15.17 16 12 H 0.06 1.49 5.88 -52.49 -0.31 1.19 16 13 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 14 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 15 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 C 0.05 0.93 5.24 -3.70 -0.02 0.91 16 20 C 0.12 1.89 6.58 -3.61 -0.02 1.86 16 21 C 0.01 0.07 6.34 -38.40 -0.24 -0.17 16 22 C -0.18 -1.79 10.90 -38.91 -0.42 -2.22 16 23 C -0.21 -1.81 10.87 -39.90 -0.43 -2.24 16 24 C -0.04 -0.32 12.06 29.64 0.36 0.04 16 25 O -0.16 -1.89 10.67 4.70 0.05 -1.84 16 26 H 0.08 0.97 8.01 -51.93 -0.42 0.56 16 27 H 0.06 0.58 8.06 -51.93 -0.42 0.16 16 28 H 0.10 1.39 6.20 -51.93 -0.32 1.07 16 29 H 0.13 1.61 5.76 -52.49 -0.30 1.30 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 0.98 5.35 -51.93 -0.28 0.70 16 32 H 0.04 0.92 6.79 -51.92 -0.35 0.57 16 33 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 34 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 35 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 37 H 0.04 0.88 6.92 -51.93 -0.36 0.52 16 38 H 0.08 1.46 8.05 -51.93 -0.42 1.04 16 39 H 0.09 1.41 7.09 -51.93 -0.37 1.04 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.20 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -31.01 348.90 -8.60 -39.61 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.06 Total: 1.23 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -1.97 Total: -3.87 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.93 Total: -47.25 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.11 Total: -11.27 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.01 -8.60 -39.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827479708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.775 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds