Wall clock time and date at job start Tue Mar 31 2020 09:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50695 * 119.99623 * 2 1 4 4 C 1.53002 * 109.47483 * 359.97438 * 3 2 1 5 5 C 1.53008 * 109.46628 * 239.99770 * 3 2 1 6 6 C 1.52997 * 109.47308 * 120.00066 * 3 2 1 7 7 N 1.46504 * 109.47298 * 180.02562 * 6 3 2 8 8 C 1.34770 * 119.99986 * 180.02562 * 7 6 3 9 9 O 1.21581 * 120.00402 * 359.97438 * 8 7 6 10 10 N 1.34786 * 119.99855 * 179.97438 * 8 7 6 11 11 C 1.39944 * 119.99743 * 174.72987 * 10 8 7 12 12 C 1.38960 * 120.03726 * 326.33961 * 11 10 8 13 13 C 1.38156 * 120.06534 * 180.02562 * 12 11 10 14 14 C 1.38174 * 120.13776 * 359.72153 * 13 12 11 15 15 C 1.38905 * 120.06764 * 0.55305 * 14 13 12 16 16 O 1.35748 * 120.02872 * 179.71950 * 15 14 13 17 17 C 1.34836 * 116.99697 * 173.82592 * 16 15 14 18 18 H 1.07996 * 119.99847 * 354.58946 * 17 16 15 19 19 C 1.38648 * 119.99925 * 174.59241 * 17 16 15 20 20 N 1.31559 * 120.00352 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00371 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47056 * 89.99766 * 21 19 17 23 23 H 1.48493 * 109.47318 * 210.00084 * 21 19 17 24 24 H 1.48500 * 109.46925 * 330.00192 * 21 19 17 25 25 C 1.38706 * 120.03321 * 146.35995 * 11 10 8 26 26 H 1.07999 * 119.99697 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00162 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00162 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47333 * 179.97438 * 4 3 2 30 30 H 1.08997 * 109.47155 * 300.00729 * 4 3 2 31 31 H 1.09007 * 109.46584 * 60.00305 * 4 3 2 32 32 H 1.08998 * 109.46990 * 299.99807 * 5 3 2 33 33 H 1.08995 * 109.47278 * 60.00339 * 5 3 2 34 34 H 1.09008 * 109.46515 * 180.02562 * 5 3 2 35 35 H 1.08998 * 109.47494 * 59.99468 * 6 3 2 36 36 H 1.08999 * 109.46674 * 299.99242 * 6 3 2 37 37 H 0.97002 * 119.99797 * 359.97438 * 7 6 3 38 38 H 0.96993 * 119.99962 * 354.73548 * 10 8 7 39 39 H 1.07995 * 119.96528 * 0.02562 * 12 11 10 40 40 H 1.07998 * 119.93109 * 180.02562 * 13 12 11 41 41 H 1.07998 * 119.96184 * 180.27952 * 14 13 12 42 42 H 0.96993 * 120.00734 * 179.97438 * 20 19 17 43 43 H 1.08002 * 120.06323 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9431 1.3861 -1.2493 6 6 2.9431 1.3863 1.2492 7 7 3.6751 2.6553 1.2495 8 6 4.5177 2.9470 2.2601 9 8 4.6701 2.1572 3.1717 10 7 5.1915 4.1143 2.2601 11 6 5.9807 4.4666 3.3607 12 6 5.5966 4.0886 4.6415 13 6 6.3751 4.4366 5.7286 14 6 7.5404 5.1561 5.5455 15 6 7.9267 5.5418 4.2682 16 8 9.0688 6.2536 4.0898 17 6 9.4531 6.4856 2.8184 18 1 8.9098 6.0374 1.9997 19 6 10.5459 7.2996 2.5620 20 7 10.9212 7.5256 1.3216 21 14 11.4853 8.0754 3.9780 22 1 12.5778 7.1648 4.4052 23 1 12.0638 9.3702 3.5378 24 1 10.5610 8.3079 5.1168 25 6 7.1470 5.1939 3.1743 26 1 -0.5399 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.6142 3.4120 -0.0002 30 1 0.4428 2.4100 -0.8908 31 1 0.4422 2.4104 0.8892 32 1 3.6515 0.5576 -1.2492 33 1 2.3165 1.3283 -2.1393 34 1 3.4884 2.3300 -1.2491 35 1 3.6514 0.5578 1.2493 36 1 2.3164 1.3286 2.1391 37 1 3.5538 3.2853 0.5220 38 1 5.1292 4.7102 1.4973 39 1 4.6887 3.5223 4.7874 40 1 6.0747 4.1413 6.7230 41 1 8.1491 5.4227 6.3968 42 1 11.6854 8.0953 1.1422 43 1 7.4472 5.4894 2.1798 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836290910.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:19 Heat of formation + Delta-G solvation = -8.856650 kcal Electronic energy + Delta-G solvation = -24042.414631 eV Core-core repulsion = 20475.222566 eV Total energy + Delta-G solvation = -3567.192065 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.48706 -39.13156 -38.33740 -36.57514 -34.24042 -34.06625 -32.33459 -30.99920 -29.42138 -28.70133 -27.73404 -26.61418 -25.18028 -22.90284 -21.74486 -21.57208 -20.43086 -18.92698 -18.33711 -17.75520 -17.61822 -16.07211 -15.87905 -15.68170 -15.16394 -15.05776 -14.69272 -14.43093 -14.19955 -13.86227 -13.74368 -13.62869 -13.44238 -13.06260 -12.59096 -12.36941 -12.25969 -12.12527 -12.08326 -11.67592 -11.48628 -11.22539 -11.18831 -11.00824 -10.95205 -10.67843 -10.29167 -10.03538 -9.76752 -9.64591 -9.48326 -9.13964 -8.83284 -7.74763 -7.24410 -6.41270 -4.08320 1.88878 2.01587 2.32663 2.73859 3.23282 3.26653 3.33048 3.41498 4.19695 4.24962 4.34283 4.38997 4.50944 4.55325 4.83844 4.91342 4.97410 5.09500 5.20476 5.34930 5.38916 5.41405 5.55619 5.61456 5.65134 5.69291 5.87479 5.89375 5.95510 6.03079 6.19377 6.22341 6.24656 6.36812 6.41764 6.47474 6.75401 6.94993 7.19081 7.24505 7.29171 7.64016 7.79604 8.02043 8.05593 8.65033 8.94489 9.57518 10.66590 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.024269 B = 0.002726 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.469638 B =10270.844041 C =11162.581336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.142 4.142 3 C -0.050 4.050 4 C -0.146 4.146 5 C -0.140 4.140 6 C 0.154 3.846 7 N -0.744 5.744 8 C 0.703 3.297 9 O -0.571 6.571 10 N -0.683 5.683 11 C 0.200 3.800 12 C -0.197 4.197 13 C -0.064 4.064 14 C -0.203 4.203 15 C 0.175 3.825 16 O -0.217 6.217 17 C -0.388 4.388 18 H 0.104 0.896 19 C 0.063 3.937 20 N -0.882 5.882 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.259 1.259 25 C -0.246 4.246 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.395 0.605 38 H 0.403 0.597 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.279 0.721 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.385 -10.055 -4.115 22.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.160 4.160 3 C -0.051 4.051 4 C -0.203 4.203 5 C -0.197 4.197 6 C 0.029 3.971 7 N -0.402 5.402 8 C 0.404 3.596 9 O -0.448 6.448 10 N -0.329 5.329 11 C 0.106 3.894 12 C -0.218 4.218 13 C -0.083 4.083 14 C -0.223 4.223 15 C 0.122 3.878 16 O -0.122 6.122 17 C -0.464 4.464 18 H 0.122 0.878 19 C -0.140 4.140 20 N -0.520 5.520 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.183 1.183 25 C -0.268 4.268 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.130 0.870 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.230 0.770 38 H 0.238 0.762 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.089 0.911 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.970 -10.599 -3.295 21.979 hybrid contribution 0.399 0.866 -0.556 1.104 sum -18.571 -9.732 -3.850 21.317 Atomic orbital electron populations 1.24029 0.96068 1.02244 1.00543 1.22758 0.95830 0.97211 1.00217 1.19927 0.95456 0.94265 0.95441 1.21983 0.98856 0.97201 1.02266 1.21844 0.99194 1.02404 0.96251 1.21145 0.93875 0.85122 0.96916 1.45149 1.47065 1.22264 1.25704 1.15881 0.79085 0.81877 0.82797 1.90946 1.68147 1.48856 1.36802 1.42590 1.49101 1.20541 1.20711 1.17187 0.89849 0.96742 0.85663 1.20632 1.02921 1.07623 0.90655 1.20523 0.93604 0.96392 0.97777 1.20230 1.00068 1.07008 0.94956 1.18790 0.85664 0.90617 0.92705 1.83613 1.34404 1.63588 1.30592 1.20722 1.14360 1.30763 0.80520 0.87835 1.24459 0.96476 0.95895 0.97184 1.69641 1.26936 1.37266 1.18183 0.86176 0.80132 0.78446 0.82140 1.19866 1.20895 1.18297 1.20895 0.95666 1.09733 1.00505 0.88457 0.87815 0.87045 0.92302 0.91977 0.91948 0.92028 0.92168 0.92235 0.91328 0.91382 0.76986 0.76207 0.86050 0.86488 0.86428 0.91104 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.18 13.70 29.01 0.40 -0.79 16 2 C -0.14 -0.96 8.76 -36.03 -0.32 -1.28 16 3 C -0.05 -0.36 0.75 -155.66 -0.12 -0.47 16 4 C -0.15 -0.92 6.95 37.16 0.26 -0.66 16 5 C -0.14 -0.94 8.28 37.16 0.31 -0.63 16 6 C 0.15 1.50 4.55 -4.04 -0.02 1.48 16 7 N -0.74 -7.94 4.96 -65.23 -0.32 -8.27 16 8 C 0.70 10.77 8.30 -86.92 -0.72 10.05 16 9 O -0.57 -10.98 14.05 5.29 0.07 -10.91 16 10 N -0.68 -10.52 5.35 -14.24 -0.08 -10.59 16 11 C 0.20 3.83 6.27 -83.71 -0.52 3.31 16 12 C -0.20 -3.76 8.65 -39.34 -0.34 -4.10 16 13 C -0.06 -1.17 10.03 -39.64 -0.40 -1.57 16 14 C -0.20 -4.13 9.99 -39.36 -0.39 -4.52 16 15 C 0.17 4.08 6.64 -39.14 -0.26 3.82 16 16 O -0.22 -5.72 8.58 0.04 0.00 -5.72 16 17 C -0.39 -10.86 9.90 30.88 0.31 -10.56 16 18 H 0.10 2.95 5.53 -52.49 -0.29 2.66 16 19 C 0.06 1.75 5.49 -17.52 -0.10 1.66 16 20 N -0.88 -25.31 13.96 55.48 0.77 -24.54 16 21 Si 0.91 21.65 28.62 -169.99 -4.86 16.79 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 25 C -0.25 -5.33 9.04 -39.21 -0.35 -5.68 16 26 H 0.10 0.51 8.06 -52.49 -0.42 0.09 16 27 H 0.10 0.59 5.69 -52.49 -0.30 0.29 16 28 H 0.11 0.72 8.06 -52.49 -0.42 0.29 16 29 H 0.06 0.36 6.86 -51.93 -0.36 0.00 16 30 H 0.06 0.34 7.50 -51.93 -0.39 -0.04 16 31 H 0.06 0.41 7.50 -51.93 -0.39 0.02 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.39 6.86 -51.92 -0.36 0.03 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.40 3.18 6.18 -40.82 -0.25 2.93 16 38 H 0.40 4.95 8.83 -40.82 -0.36 4.59 16 39 H 0.12 2.29 6.43 -52.49 -0.34 1.96 16 40 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 42 H 0.28 7.40 8.31 -40.82 -0.34 7.07 16 43 H 0.14 3.00 5.72 -52.49 -0.30 2.70 16 LS Contribution 354.36 15.07 5.34 5.34 Total: -1.00 -32.33 354.36 -7.19 -39.52 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.85 Total: 8.33 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -2.27 Total: -9.95 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.37 Total: -43.40 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.07 Total: -16.63 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.86 Total: 16.79 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.33 -7.19 -39.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836290910.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.661 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds