Wall clock time and date at job start Tue Mar 31 2020 09:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50695 * 119.99623 * 2 1 4 4 C 1.53002 * 109.47483 * 359.97438 * 3 2 1 5 5 C 1.53008 * 109.46628 * 239.99770 * 3 2 1 6 6 C 1.52997 * 109.47308 * 120.00066 * 3 2 1 7 7 N 1.46504 * 109.47298 * 180.02562 * 6 3 2 8 8 C 1.34770 * 119.99986 * 180.02562 * 7 6 3 9 9 O 1.21581 * 120.00402 * 359.97438 * 8 7 6 10 10 N 1.34786 * 119.99855 * 179.97438 * 8 7 6 11 11 C 1.39944 * 119.99743 * 174.72987 * 10 8 7 12 12 C 1.38960 * 120.03726 * 326.33961 * 11 10 8 13 13 C 1.38156 * 120.06534 * 180.02562 * 12 11 10 14 14 C 1.38174 * 120.13776 * 359.72153 * 13 12 11 15 15 C 1.38905 * 120.06764 * 0.55305 * 14 13 12 16 16 O 1.35748 * 120.02872 * 179.71950 * 15 14 13 17 17 C 1.34836 * 116.99697 * 173.82592 * 16 15 14 18 18 H 1.07996 * 119.99847 * 354.58946 * 17 16 15 19 19 C 1.38648 * 119.99925 * 174.59241 * 17 16 15 20 20 N 1.31559 * 120.00352 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00371 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47056 * 89.99766 * 21 19 17 23 23 H 1.48493 * 109.47318 * 210.00084 * 21 19 17 24 24 H 1.48500 * 109.46925 * 330.00192 * 21 19 17 25 25 C 1.38706 * 120.03321 * 146.35995 * 11 10 8 26 26 H 1.07999 * 119.99697 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00162 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00162 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47333 * 179.97438 * 4 3 2 30 30 H 1.08997 * 109.47155 * 300.00729 * 4 3 2 31 31 H 1.09007 * 109.46584 * 60.00305 * 4 3 2 32 32 H 1.08998 * 109.46990 * 299.99807 * 5 3 2 33 33 H 1.08995 * 109.47278 * 60.00339 * 5 3 2 34 34 H 1.09008 * 109.46515 * 180.02562 * 5 3 2 35 35 H 1.08998 * 109.47494 * 59.99468 * 6 3 2 36 36 H 1.08999 * 109.46674 * 299.99242 * 6 3 2 37 37 H 0.97002 * 119.99797 * 359.97438 * 7 6 3 38 38 H 0.96993 * 119.99962 * 354.73548 * 10 8 7 39 39 H 1.07995 * 119.96528 * 0.02562 * 12 11 10 40 40 H 1.07998 * 119.93109 * 180.02562 * 13 12 11 41 41 H 1.07998 * 119.96184 * 180.27952 * 14 13 12 42 42 H 0.96993 * 120.00734 * 179.97438 * 20 19 17 43 43 H 1.08002 * 120.06323 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9431 1.3861 -1.2493 6 6 2.9431 1.3863 1.2492 7 7 3.6751 2.6553 1.2495 8 6 4.5177 2.9470 2.2601 9 8 4.6701 2.1572 3.1717 10 7 5.1915 4.1143 2.2601 11 6 5.9807 4.4666 3.3607 12 6 5.5966 4.0886 4.6415 13 6 6.3751 4.4366 5.7286 14 6 7.5404 5.1561 5.5455 15 6 7.9267 5.5418 4.2682 16 8 9.0688 6.2536 4.0898 17 6 9.4531 6.4856 2.8184 18 1 8.9098 6.0374 1.9997 19 6 10.5459 7.2996 2.5620 20 7 10.9212 7.5256 1.3216 21 14 11.4853 8.0754 3.9780 22 1 12.5778 7.1648 4.4052 23 1 12.0638 9.3702 3.5378 24 1 10.5610 8.3079 5.1168 25 6 7.1470 5.1939 3.1743 26 1 -0.5399 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.6142 3.4120 -0.0002 30 1 0.4428 2.4100 -0.8908 31 1 0.4422 2.4104 0.8892 32 1 3.6515 0.5576 -1.2492 33 1 2.3165 1.3283 -2.1393 34 1 3.4884 2.3300 -1.2491 35 1 3.6514 0.5578 1.2493 36 1 2.3164 1.3286 2.1391 37 1 3.5538 3.2853 0.5220 38 1 5.1292 4.7102 1.4973 39 1 4.6887 3.5223 4.7874 40 1 6.0747 4.1413 6.7230 41 1 8.1491 5.4227 6.3968 42 1 11.6854 8.0953 1.1422 43 1 7.4472 5.4894 2.1798 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836290910.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:19 Heat of formation + Delta-G solvation = -29.220324 kcal Electronic energy + Delta-G solvation = -24043.297667 eV Core-core repulsion = 20475.222566 eV Total energy + Delta-G solvation = -3568.075100 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.78067 -40.65421 -39.31785 -38.14463 -35.65867 -35.08691 -34.37256 -31.69883 -30.98739 -30.22704 -28.25280 -27.56114 -27.09589 -24.03060 -23.39909 -22.55696 -21.72652 -20.23726 -19.57581 -19.36145 -18.83155 -17.46129 -17.06870 -16.67454 -16.56451 -16.29103 -15.91712 -15.75695 -15.64906 -15.38868 -15.16257 -14.68338 -14.47633 -14.31698 -14.17387 -13.95582 -13.34092 -13.11526 -12.93793 -12.80264 -12.72540 -12.60702 -12.38633 -12.08270 -12.06473 -11.83054 -11.58777 -11.53571 -11.34436 -11.17504 -10.81599 -10.28128 -10.17994 -9.36648 -8.88240 -8.48683 -6.21288 0.43738 0.67134 1.31036 1.34384 1.38271 1.54044 1.63909 2.02985 2.30022 2.79118 3.09433 3.12337 3.17663 3.72260 3.79558 3.89936 4.12132 4.26737 4.32948 4.43675 4.45095 4.60218 4.64992 4.65884 4.73182 4.80228 4.86954 4.92785 4.95296 5.02690 5.13976 5.30871 5.33907 5.35281 5.37495 5.41244 5.50790 5.66057 5.76110 5.76823 5.87377 5.90705 5.98614 6.24206 6.85904 6.90356 7.42071 7.59467 8.62694 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.024269 B = 0.002726 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.469638 B =10270.844041 C =11162.581336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.157 4.157 3 C -0.041 4.041 4 C -0.146 4.146 5 C -0.140 4.140 6 C 0.154 3.846 7 N -0.722 5.722 8 C 0.701 3.299 9 O -0.610 6.610 10 N -0.677 5.677 11 C 0.202 3.798 12 C -0.192 4.192 13 C -0.052 4.052 14 C -0.204 4.204 15 C 0.141 3.859 16 O -0.240 6.240 17 C -0.397 4.397 18 H 0.082 0.918 19 C 0.011 3.989 20 N -0.922 5.922 21 Si 0.969 3.031 22 H -0.267 1.267 23 H -0.269 1.269 24 H -0.261 1.261 25 C -0.256 4.256 26 H 0.106 0.894 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.410 0.590 38 H 0.418 0.582 39 H 0.129 0.871 40 H 0.159 0.841 41 H 0.135 0.865 42 H 0.284 0.716 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.164 -10.514 -3.262 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.175 4.175 3 C -0.041 4.041 4 C -0.203 4.203 5 C -0.197 4.197 6 C 0.030 3.970 7 N -0.379 5.379 8 C 0.402 3.598 9 O -0.489 6.489 10 N -0.324 5.324 11 C 0.107 3.893 12 C -0.213 4.213 13 C -0.070 4.070 14 C -0.223 4.223 15 C 0.091 3.909 16 O -0.147 6.147 17 C -0.473 4.473 18 H 0.099 0.901 19 C -0.187 4.187 20 N -0.563 5.563 21 Si 0.791 3.209 22 H -0.192 1.192 23 H -0.193 1.193 24 H -0.185 1.185 25 C -0.278 4.278 26 H 0.125 0.875 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.248 0.752 38 H 0.255 0.745 39 H 0.147 0.853 40 H 0.177 0.823 41 H 0.153 0.847 42 H 0.094 0.906 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.813 -11.067 -2.495 23.704 hybrid contribution 0.663 0.808 -0.817 1.327 sum -20.149 -10.259 -3.312 22.852 Atomic orbital electron populations 1.24195 0.95862 1.03048 0.99083 1.22784 0.96186 0.97039 1.01516 1.19839 0.95185 0.95037 0.94041 1.21994 0.98760 0.96775 1.02764 1.21856 0.99205 1.02207 0.96470 1.21242 0.93665 0.83945 0.98186 1.45014 1.45375 1.22820 1.24721 1.16022 0.79324 0.81234 0.83223 1.90914 1.69485 1.49942 1.38597 1.42486 1.48483 1.21057 1.20422 1.17221 0.89294 0.95699 0.87092 1.20926 1.03055 1.06614 0.90741 1.20969 0.92070 0.94437 0.99521 1.20532 1.00891 1.06707 0.94201 1.19331 0.85640 0.91401 0.94512 1.83558 1.36306 1.65604 1.29237 1.20676 1.14679 1.30954 0.81006 0.90064 1.25249 0.97333 0.96476 0.99653 1.69719 1.28021 1.38693 1.19880 0.85240 0.78691 0.78129 0.78842 1.19224 1.19332 1.18530 1.20854 0.96696 1.10684 0.99588 0.87543 0.87183 0.87015 0.92021 0.90797 0.92155 0.92682 0.91149 0.92081 0.92529 0.92173 0.75172 0.74502 0.85279 0.82331 0.84745 0.90604 0.86265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.91 13.70 67.77 0.93 -0.98 16 2 C -0.16 -1.90 8.76 25.64 0.22 -1.67 16 3 C -0.04 -0.51 0.75 -52.93 -0.04 -0.55 16 4 C -0.15 -1.52 6.95 71.98 0.50 -1.02 16 5 C -0.14 -1.66 8.28 71.98 0.60 -1.06 16 6 C 0.15 2.84 4.55 86.38 0.39 3.23 16 7 N -0.72 -14.46 4.96 -478.54 -2.37 -16.83 16 8 C 0.70 20.76 8.30 179.05 1.49 22.24 16 9 O -0.61 -22.90 14.05 -3.97 -0.06 -22.96 16 10 N -0.68 -20.31 5.35 -317.23 -1.70 -22.01 16 11 C 0.20 7.64 6.27 38.13 0.24 7.88 16 12 C -0.19 -6.95 8.65 22.42 0.19 -6.76 16 13 C -0.05 -1.74 10.03 22.23 0.22 -1.51 16 14 C -0.20 -7.98 9.99 22.41 0.22 -7.75 16 15 C 0.14 6.64 6.64 22.56 0.15 6.79 16 16 O -0.24 -12.92 8.58 -22.78 -0.20 -13.12 16 17 C -0.40 -23.06 9.90 67.92 0.67 -22.39 16 18 H 0.08 4.92 5.53 -2.91 -0.02 4.90 16 19 C 0.01 0.65 5.49 84.83 0.47 1.12 16 20 N -0.92 -54.39 13.96 21.61 0.30 -54.08 16 21 Si 0.97 45.04 28.62 68.60 1.96 47.01 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 25 C -0.26 -11.31 9.04 22.51 0.20 -11.11 16 26 H 0.11 0.90 8.06 -2.91 -0.02 0.88 16 27 H 0.11 0.99 5.69 -2.91 -0.02 0.97 16 28 H 0.11 1.32 8.06 -2.91 -0.02 1.30 16 29 H 0.06 0.60 6.86 -2.39 -0.02 0.59 16 30 H 0.07 0.62 7.50 -2.39 -0.02 0.61 16 31 H 0.06 0.67 7.50 -2.38 -0.02 0.65 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.69 6.86 -2.38 -0.02 0.67 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.41 5.86 6.18 -92.71 -0.57 5.29 16 38 H 0.42 9.94 8.83 -92.71 -0.82 9.12 16 39 H 0.13 4.57 6.43 -2.91 -0.02 4.55 16 40 H 0.16 4.04 8.06 -2.91 -0.02 4.01 16 41 H 0.13 4.76 8.06 -2.91 -0.02 4.73 16 42 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 43 H 0.12 5.59 5.72 -2.91 -0.02 5.57 16 Total: -1.00 -70.98 354.36 4.05 -66.93 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: -0.35 Total: 28.60 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: 6.46 Total: -13.54 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -3.77 Total: -92.92 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -0.25 Total: -36.08 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.96 Total: 47.01 kcal Total: -70.98 4.05 -66.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836290910.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.710 kcal (2) G-P(sol) polarization free energy of solvation -70.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds