Wall clock time and date at job start Tue Mar 31 2020 08:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46807 * 2 1 4 4 C 1.53002 * 109.47142 * 120.00084 * 2 1 3 5 5 H 1.09000 * 112.77667 * 189.53184 * 4 2 1 6 6 C 1.53755 * 113.55389 * 320.38717 * 4 2 1 7 7 C 1.53495 * 83.25753 * 140.98475 * 6 4 2 8 8 N 1.47059 * 87.98577 * 333.76345 * 7 6 4 9 9 C 1.34777 * 136.05703 * 207.07863 * 8 7 6 10 10 O 1.21589 * 120.00233 * 185.01457 * 9 8 7 11 11 N 1.34778 * 120.00101 * 5.02168 * 9 8 7 12 12 C 1.39946 * 120.00306 * 175.21543 * 11 9 8 13 13 C 1.38956 * 120.03119 * 35.21846 * 12 11 9 14 14 C 1.38164 * 120.06420 * 179.97438 * 13 12 11 15 15 C 1.38170 * 120.13918 * 0.02562 * 14 13 12 16 16 C 1.38911 * 120.06648 * 0.02562 * 15 14 13 17 17 O 1.35755 * 120.02937 * 179.97438 * 16 15 14 18 18 C 1.34829 * 116.99669 * 174.44332 * 17 16 15 19 19 H 1.08000 * 120.00052 * 5.06053 * 18 17 16 20 20 C 1.38652 * 120.00199 * 185.06262 * 18 17 16 21 21 N 1.31563 * 119.99690 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00434 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47190 * 59.99861 * 22 20 18 24 24 H 1.48498 * 109.47378 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46877 * 299.99773 * 22 20 18 26 26 C 1.38699 * 120.03352 * 215.21944 * 12 11 9 27 27 H 1.08992 * 109.47445 * 65.76818 * 1 2 3 28 28 H 1.09002 * 109.46573 * 185.76943 * 1 2 3 29 29 H 1.09004 * 109.47061 * 305.76677 * 1 2 3 30 30 H 1.08997 * 109.46939 * 240.00134 * 2 1 3 31 31 H 1.08997 * 109.46779 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47557 * 300.00583 * 3 2 1 33 33 H 1.09010 * 109.47004 * 60.00560 * 3 2 1 34 34 H 1.09000 * 114.39264 * 27.42684 * 6 4 2 35 35 H 1.08998 * 114.08644 * 254.52916 * 6 4 2 36 36 H 1.08997 * 113.46876 * 218.97693 * 7 6 4 37 37 H 1.09002 * 113.46168 * 88.54411 * 7 6 4 38 38 H 0.97005 * 119.99846 * 355.21293 * 11 9 8 39 39 H 1.07998 * 119.97145 * 0.25942 * 13 12 11 40 40 H 1.07999 * 119.92823 * 179.97438 * 14 13 12 41 41 H 1.07997 * 119.96550 * 179.97438 * 15 14 13 42 42 H 0.96998 * 120.00142 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.07126 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1152 -0.6109 1.3909 6 6 1.2212 -0.4136 2.5137 7 6 1.4460 -1.9043 2.8028 8 7 1.5754 -2.1127 1.3528 9 6 1.3662 -3.1322 0.4965 10 8 1.6608 -3.0109 -0.6769 11 7 0.8302 -4.2863 0.9408 12 6 0.5201 -5.3079 0.0359 13 6 1.3278 -5.5225 -1.0742 14 6 1.0226 -6.5312 -1.9676 15 6 -0.0864 -7.3291 -1.7608 16 6 -0.8983 -7.1187 -0.6535 17 8 -1.9880 -7.9028 -0.4513 18 6 -2.6669 -7.7222 0.6995 19 1 -2.3860 -6.9260 1.3730 20 6 -3.7256 -8.5588 1.0184 21 7 -4.0674 -9.5290 0.1983 22 14 -4.6666 -8.3083 2.6125 23 1 -5.2664 -6.9499 2.6250 24 1 -5.7428 -9.3261 2.7172 25 1 -3.7382 -8.4501 3.7628 26 6 -0.5938 -6.1071 0.2463 27 1 -0.3634 0.4217 -0.9370 28 1 -0.3632 -1.0225 0.1033 29 1 -0.3633 0.6007 0.8339 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 0.1816 -0.1472 2.3230 35 1 1.7189 0.2574 3.2137 36 1 0.5765 -2.3982 3.2365 37 1 2.3645 -2.1057 3.3540 38 1 0.6594 -4.4088 1.8878 39 1 2.1976 -4.9033 -1.2363 40 1 1.6516 -6.6958 -2.8299 41 1 -0.3226 -8.1165 -2.4612 42 1 -4.8083 -10.1141 0.4212 43 1 -1.2229 -5.9424 1.1086 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836291121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:02 Heat of formation + Delta-G solvation = -9.448830 kcal Electronic energy + Delta-G solvation = -24758.241520 eV Core-core repulsion = 21191.023776 eV Total energy + Delta-G solvation = -3567.217744 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.03284 -40.89435 -39.70764 -37.93624 -35.79046 -35.19326 -34.22831 -31.45559 -30.68920 -29.45685 -28.09939 -27.30044 -26.66209 -24.15610 -23.49406 -22.81070 -21.61162 -20.54444 -19.62145 -19.22169 -18.55712 -17.42801 -17.13446 -16.75592 -16.56026 -16.18765 -15.97236 -15.74544 -15.49930 -15.24049 -14.67465 -14.61468 -14.21024 -14.06584 -13.92846 -13.56557 -13.31227 -13.19597 -13.11386 -12.81961 -12.66686 -12.51217 -12.46820 -12.19668 -12.14069 -11.92149 -11.76785 -11.47600 -11.29565 -11.16760 -10.87770 -10.70849 -9.77290 -9.32604 -8.85068 -8.46279 -6.15573 0.43032 0.69534 1.35172 1.36382 1.46610 1.52120 2.04943 2.18278 2.79737 2.83664 3.16283 3.44200 3.48785 3.86471 3.98132 4.04571 4.09060 4.19781 4.32499 4.36388 4.43826 4.49682 4.61571 4.62156 4.67333 4.70670 4.76335 4.81206 4.97291 5.01853 5.03819 5.07995 5.10698 5.25395 5.28526 5.39934 5.43413 5.49027 5.52224 5.66597 5.67192 6.01292 6.16199 6.20866 6.92473 6.97614 7.46419 7.76895 8.76570 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.016690 B = 0.003537 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.199076 B = 7915.340111 C = 8954.772613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C -0.134 4.134 4 C 0.151 3.849 5 H 0.105 0.895 6 C -0.135 4.135 7 C 0.091 3.909 8 N -0.667 5.667 9 C 0.727 3.273 10 O -0.609 6.609 11 N -0.675 5.675 12 C 0.204 3.796 13 C -0.200 4.200 14 C -0.052 4.052 15 C -0.214 4.214 16 C 0.137 3.863 17 O -0.225 6.225 18 C -0.416 4.416 19 H 0.102 0.898 20 C -0.022 4.022 21 N -0.920 5.920 22 Si 1.019 2.981 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.254 1.254 26 C -0.261 4.261 27 H 0.045 0.955 28 H 0.021 0.979 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.126 0.874 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.415 0.585 39 H 0.130 0.870 40 H 0.153 0.847 41 H 0.120 0.880 42 H 0.273 0.727 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.312 21.706 9.577 26.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.124 4.124 3 C -0.192 4.192 4 C 0.048 3.952 5 H 0.123 0.877 6 C -0.172 4.172 7 C -0.031 4.031 8 N -0.406 5.406 9 C 0.431 3.569 10 O -0.489 6.489 11 N -0.322 5.322 12 C 0.109 3.891 13 C -0.221 4.221 14 C -0.070 4.070 15 C -0.234 4.234 16 C 0.085 3.915 17 O -0.132 6.132 18 C -0.492 4.492 19 H 0.119 0.881 20 C -0.219 4.219 21 N -0.558 5.558 22 Si 0.838 3.162 23 H -0.182 1.182 24 H -0.197 1.197 25 H -0.178 1.178 26 C -0.282 4.282 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.145 0.855 36 H 0.101 0.899 37 H 0.125 0.875 38 H 0.251 0.749 39 H 0.148 0.852 40 H 0.171 0.829 41 H 0.139 0.861 42 H 0.082 0.918 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 12.249 21.344 8.472 26.026 hybrid contribution -0.724 -0.723 0.490 1.134 sum 11.525 20.621 8.962 25.266 Atomic orbital electron populations 1.21790 0.95379 1.00208 1.01999 1.21233 0.96040 0.97602 0.97528 1.21697 1.01315 0.93291 1.02880 1.23030 0.99698 0.76626 0.95843 0.87719 1.23641 1.01997 0.95756 0.95831 1.23285 1.03329 0.96287 0.80155 1.49050 1.69472 1.12215 1.09831 1.15407 0.78321 0.79038 0.84158 1.90877 1.58883 1.81929 1.17191 1.42389 1.65831 1.13459 1.10522 1.17219 0.92480 0.87964 0.91446 1.20967 1.02277 1.01531 0.97322 1.20925 0.94954 0.92605 0.98559 1.20477 0.98209 1.05266 0.99473 1.19549 0.87312 0.90245 0.94373 1.83978 1.34791 1.54703 1.39690 1.21776 1.13350 1.17216 0.96838 0.88074 1.26609 0.97622 0.94379 1.03322 1.70184 1.28748 1.18265 1.38615 0.84651 0.77472 0.78852 0.75261 1.18215 1.19724 1.17828 1.20783 1.00298 1.02356 1.04809 0.93608 0.95936 0.89953 0.93614 0.91859 0.92762 0.90344 0.88306 0.85548 0.89920 0.87478 0.74868 0.85231 0.82917 0.86146 0.91795 0.85417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.21 71.98 0.59 -2.23 16 2 C -0.10 -2.00 2.74 -10.79 -0.03 -2.03 16 3 C -0.13 -1.63 9.17 71.98 0.66 -0.97 16 4 C 0.15 2.37 3.82 41.88 0.16 2.53 16 5 H 0.11 1.34 8.14 -2.39 -0.02 1.33 16 6 C -0.13 -1.16 7.67 31.02 0.24 -0.92 16 7 C 0.09 1.07 8.28 83.18 0.69 1.76 16 8 N -0.67 -14.60 3.00 -851.36 -2.55 -17.15 16 9 C 0.73 23.38 8.01 179.05 1.43 24.82 16 10 O -0.61 -24.35 13.53 -4.00 -0.05 -24.40 16 11 N -0.67 -21.73 5.34 -317.23 -1.69 -23.43 16 12 C 0.20 8.20 6.29 38.13 0.24 8.44 16 13 C -0.20 -7.98 8.69 22.42 0.19 -7.79 16 14 C -0.05 -2.01 10.03 22.24 0.22 -1.78 16 15 C -0.21 -9.70 9.99 22.41 0.22 -9.47 16 16 C 0.14 7.04 6.65 22.56 0.15 7.19 16 17 O -0.23 -13.70 9.76 -22.79 -0.22 -13.93 16 18 C -0.42 -24.18 9.49 67.92 0.64 -23.54 16 19 H 0.10 5.34 5.20 -2.91 -0.02 5.33 16 20 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 21 N -0.92 -56.53 13.67 21.61 0.30 -56.23 16 22 Si 1.02 42.20 29.55 68.60 2.03 44.23 16 23 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 25 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 26 C -0.26 -11.86 9.08 22.51 0.20 -11.65 16 27 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.02 0.60 7.16 -2.39 -0.02 0.58 16 29 H 0.08 1.21 6.47 -2.38 -0.02 1.19 16 30 H 0.05 1.26 7.39 -2.39 -0.02 1.24 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.10 0.98 5.74 -2.39 -0.01 0.97 16 35 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.41 10.71 8.55 -92.70 -0.79 9.92 16 39 H 0.13 5.14 6.23 -2.91 -0.02 5.12 16 40 H 0.15 4.69 8.06 -2.91 -0.02 4.67 16 41 H 0.12 5.26 8.06 -2.91 -0.02 5.24 16 42 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 43 H 0.13 5.70 5.64 -2.91 -0.02 5.68 16 Total: -1.00 -79.33 351.73 4.13 -75.20 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: 0.24 Total: 32.13 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 6.09 Total: -16.42 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -3.95 Total: -96.81 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.28 Total: -38.33 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -79.33 4.13 -75.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836291121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.754 kcal (2) G-P(sol) polarization free energy of solvation -79.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds