Wall clock time and date at job start Tue Mar 31 2020 09:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 N 1.41601 * 114.00175 * 2 1 4 4 C 1.29338 * 119.99935 * 179.97438 * 3 2 1 5 5 C 1.47610 * 119.99610 * 180.02562 * 4 3 2 6 6 C 1.39728 * 119.99987 * 180.02562 * 5 4 3 7 7 C 1.37656 * 119.99216 * 180.30152 * 6 5 4 8 8 C 1.39689 * 120.00326 * 359.46663 * 7 6 5 9 9 C 1.47796 * 119.99204 * 180.26038 * 8 7 6 10 10 O 1.21563 * 119.99745 * 180.25112 * 9 8 7 11 11 N 1.34781 * 120.00410 * 0.24717 * 9 8 7 12 12 C 1.46498 * 119.99814 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.46726 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47100 * 300.00041 * 13 12 11 15 15 C 1.53005 * 109.47260 * 60.00004 * 13 12 11 16 16 C 1.50697 * 109.47149 * 179.97438 * 13 12 11 17 17 H 1.08002 * 120.00192 * 0.02562 * 16 13 12 18 18 C 1.37875 * 120.00400 * 179.97438 * 16 13 12 19 19 N 1.31514 * 119.99499 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 120.00436 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.46853 * 60.00305 * 20 18 16 22 22 H 1.48503 * 109.47161 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46725 * 300.00331 * 20 18 16 24 24 C 1.39688 * 120.00763 * 0.50519 * 8 7 6 25 25 C 1.37651 * 120.00392 * 359.77366 * 24 8 7 26 26 H 1.09003 * 109.47047 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46389 * 299.99220 * 1 2 3 28 28 H 1.08996 * 109.47032 * 59.99739 * 1 2 3 29 29 H 1.08002 * 119.99841 * 0.02562 * 4 3 2 30 30 H 1.08002 * 120.00010 * 0.02562 * 6 5 4 31 31 H 1.08004 * 119.99380 * 179.72118 * 7 6 5 32 32 H 0.97001 * 119.99521 * 0.02562 * 11 9 8 33 33 H 1.08999 * 109.47243 * 300.00055 * 12 11 9 34 34 H 1.08997 * 109.47541 * 60.00125 * 12 11 9 35 35 H 1.09001 * 109.47130 * 59.99998 * 14 13 12 36 36 H 1.08994 * 109.46592 * 180.02562 * 14 13 12 37 37 H 1.09002 * 109.46532 * 299.99849 * 14 13 12 38 38 H 1.08999 * 109.46987 * 59.99818 * 15 13 12 39 39 H 1.09000 * 109.47102 * 180.02562 * 15 13 12 40 40 H 1.09001 * 109.47077 * 300.00068 * 15 13 12 41 41 H 0.97001 * 120.00042 * 179.97438 * 19 18 16 42 42 H 1.08002 * 119.99460 * 179.75166 * 24 8 7 43 43 H 1.08007 * 120.00042 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 3.2913 1.4287 0.0005 5 6 3.8917 2.7772 0.0011 6 6 5.2813 2.9233 0.0011 7 6 5.8410 4.1809 0.0079 8 6 5.0198 5.3110 0.0035 9 6 5.6211 6.6611 0.0050 10 8 4.9066 7.6446 0.0058 11 7 6.9615 6.8020 0.0055 12 6 7.5573 8.1404 0.0076 13 6 9.0826 8.0195 0.0071 14 6 9.5342 7.2582 1.2551 15 6 9.5338 7.2622 -1.2434 16 6 9.6955 9.3962 0.0086 17 1 9.0608 10.2700 0.0102 18 6 11.0667 9.5403 0.0090 19 7 11.8397 8.4763 0.0077 20 14 11.8266 11.2468 0.0116 21 1 11.3883 11.9820 1.2251 22 1 13.3070 11.1295 0.0110 23 1 11.3885 11.9855 -1.1999 24 6 3.6306 5.1650 0.0029 25 6 3.0706 3.9076 0.0019 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 3.9261 0.5549 0.0005 30 1 5.9161 2.0496 0.0002 31 1 6.9151 4.2939 0.0124 32 1 7.5316 6.0172 0.0046 33 1 7.2359 8.6825 -0.8817 34 1 7.2355 8.6800 0.8982 35 1 9.0908 6.2624 1.2536 36 1 10.6208 7.1725 1.2550 37 1 9.2127 7.7978 2.1460 38 1 9.2120 7.8046 -2.1325 39 1 10.6204 7.1757 -1.2435 40 1 9.0905 6.2664 -1.2449 41 1 12.8044 8.5777 0.0076 42 1 2.9959 6.0389 0.0036 43 1 1.9964 3.7949 0.0019 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837885825.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:19 Heat of formation + Delta-G solvation = -1.611799 kcal Electronic energy + Delta-G solvation = -23674.835477 eV Core-core repulsion = 20107.957572 eV Total energy + Delta-G solvation = -3566.877905 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.11869 -38.60123 -37.66859 -36.37761 -34.53002 -33.40844 -31.34053 -31.17834 -30.31548 -27.01646 -25.80256 -25.75893 -25.20005 -24.10809 -22.61225 -21.29171 -20.04042 -18.90978 -17.91255 -17.66438 -16.43350 -15.86123 -15.58078 -15.54286 -15.12147 -14.92653 -14.83616 -14.49058 -14.28358 -13.72445 -13.38595 -13.28537 -12.92578 -12.79244 -12.73958 -12.21601 -12.16057 -12.05325 -11.41370 -11.32472 -11.19875 -10.87106 -10.74866 -10.42663 -10.34405 -10.30641 -10.22750 -9.71484 -9.66735 -9.30996 -9.21135 -8.82771 -8.79900 -8.46937 -8.33451 -6.04006 -4.14066 0.25363 1.19584 1.90232 2.31202 3.10605 3.29253 3.33603 3.36815 3.61580 3.87290 4.28576 4.38717 4.58571 4.71889 4.83313 5.01507 5.01735 5.06925 5.14399 5.22810 5.25556 5.28022 5.53973 5.76778 5.80205 6.09008 6.13105 6.18424 6.29042 6.29441 6.47061 6.61570 6.73145 6.78190 6.90092 6.95893 6.98673 7.10063 7.31960 7.52547 7.67240 7.97070 7.98161 8.11636 8.35597 8.59266 8.86168 9.51763 10.97410 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.041976 B = 0.002310 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.890374 B =12120.739955 C =12591.260354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.246 6.246 3 N -0.337 5.337 4 C 0.152 3.848 5 C -0.049 4.049 6 C -0.091 4.091 7 C -0.092 4.092 8 C -0.104 4.104 9 C 0.543 3.457 10 O -0.546 6.546 11 N -0.708 5.708 12 C 0.130 3.870 13 C 0.055 3.945 14 C -0.131 4.131 15 C -0.131 4.131 16 C -0.506 4.506 17 H 0.057 0.943 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.069 4.069 25 C -0.088 4.088 26 H 0.096 0.904 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.127 0.873 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.398 0.602 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.005 0.995 36 H 0.086 0.914 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.086 0.914 40 H 0.005 0.995 41 H 0.261 0.739 42 H 0.141 0.859 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.737 -16.234 -0.010 21.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.260 6.260 3 N -0.083 5.083 4 C -0.058 4.058 5 C -0.050 4.050 6 C -0.111 4.111 7 C -0.110 4.110 8 C -0.108 4.108 9 C 0.329 3.671 10 O -0.425 6.425 11 N -0.359 5.359 12 C 0.008 3.992 13 C 0.055 3.945 14 C -0.189 4.189 15 C -0.189 4.189 16 C -0.545 4.545 17 H 0.075 0.925 18 C -0.135 4.135 19 N -0.524 5.524 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.088 4.088 25 C -0.107 4.107 26 H 0.114 0.886 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.144 0.856 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.234 0.766 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.024 0.976 36 H 0.105 0.895 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.105 0.895 40 H 0.024 0.976 41 H 0.071 0.929 42 H 0.158 0.842 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.826 -15.375 -0.009 22.064 hybrid contribution 1.146 -0.043 0.001 1.146 sum -14.680 -15.418 -0.008 21.289 Atomic orbital electron populations 1.22721 0.78565 1.02518 1.01313 1.89836 1.22299 1.20229 1.93672 1.76637 1.13889 1.04184 1.13591 1.24305 0.91995 0.96787 0.92676 1.18521 0.93177 0.90173 1.03163 1.21127 0.93114 0.97840 0.98988 1.21311 1.00192 0.91561 0.97985 1.20362 0.94524 0.93670 1.02283 1.18268 0.82979 0.88276 0.77611 1.90750 1.61278 1.39798 1.50702 1.46279 1.05618 1.11421 1.72540 1.21788 0.95890 0.80747 1.00760 1.18371 0.87171 0.96117 0.92883 1.21841 1.04309 0.95143 0.97610 1.21841 1.04300 0.95144 0.97606 1.20929 0.91428 0.91100 1.51015 0.92452 1.24879 0.97138 0.96731 0.94769 1.69787 1.04226 1.27963 1.50459 0.86623 0.77907 0.84578 0.78685 1.20283 1.21334 1.20286 1.21262 0.93821 0.97844 0.95903 1.21323 1.00439 0.91120 0.97865 0.88590 0.93089 0.93094 0.85584 0.84567 0.84710 0.76564 0.92437 0.92436 0.97564 0.89508 0.95358 0.95351 0.89515 0.97576 0.92930 0.84156 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.32 11.47 101.05 1.16 1.48 16 2 O -0.25 -2.60 11.72 -11.47 -0.13 -2.74 16 3 N -0.34 -3.66 10.45 32.13 0.34 -3.33 16 4 C 0.15 1.40 10.90 -14.78 -0.16 1.24 16 5 C -0.05 -0.47 5.87 -104.96 -0.62 -1.09 16 6 C -0.09 -0.81 9.77 -39.24 -0.38 -1.19 16 7 C -0.09 -0.99 9.52 -39.25 -0.37 -1.37 16 8 C -0.10 -1.41 5.88 -104.91 -0.62 -2.03 16 9 C 0.54 9.39 7.77 -12.35 -0.10 9.29 16 10 O -0.55 -11.30 16.33 5.31 0.09 -11.21 16 11 N -0.71 -12.30 4.91 -61.26 -0.30 -12.60 16 12 C 0.13 2.71 4.50 -4.04 -0.02 2.69 16 13 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 14 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 15 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 16 C -0.51 -13.01 8.01 -34.44 -0.28 -13.29 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 19 N -0.89 -23.16 9.35 55.43 0.52 -22.64 16 20 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 24 C -0.07 -0.86 9.58 -39.25 -0.38 -1.24 16 25 C -0.09 -0.93 9.56 -39.24 -0.38 -1.31 16 26 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 31 H 0.14 1.30 6.38 -52.48 -0.34 0.96 16 32 H 0.40 6.11 4.18 -40.82 -0.17 5.93 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 36 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 40 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 41 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 42 H 0.14 1.75 7.64 -52.49 -0.40 1.35 16 43 H 0.14 1.33 7.54 -52.48 -0.40 0.94 16 LS Contribution 359.02 15.07 5.41 5.41 Total: -1.00 -29.76 359.02 -6.80 -36.56 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.99 Total: 4.25 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -1.70 Total: -9.16 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.55 Total: -38.57 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.05 Total: -13.95 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.76 -6.80 -36.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837885825.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.947 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds