Wall clock time and date at job start Tue Mar 31 2020 09:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 N 1.41601 * 114.00175 * 2 1 4 4 C 1.29338 * 119.99935 * 179.97438 * 3 2 1 5 5 C 1.47610 * 119.99610 * 180.02562 * 4 3 2 6 6 C 1.39728 * 119.99987 * 180.02562 * 5 4 3 7 7 C 1.37656 * 119.99216 * 180.30152 * 6 5 4 8 8 C 1.39689 * 120.00326 * 359.46663 * 7 6 5 9 9 C 1.47796 * 119.99204 * 180.26038 * 8 7 6 10 10 O 1.21563 * 119.99745 * 180.25112 * 9 8 7 11 11 N 1.34781 * 120.00410 * 0.24717 * 9 8 7 12 12 C 1.46498 * 119.99814 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.46726 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47100 * 300.00041 * 13 12 11 15 15 C 1.53005 * 109.47260 * 60.00004 * 13 12 11 16 16 C 1.50697 * 109.47149 * 179.97438 * 13 12 11 17 17 H 1.08002 * 120.00192 * 0.02562 * 16 13 12 18 18 C 1.37875 * 120.00400 * 179.97438 * 16 13 12 19 19 N 1.31514 * 119.99499 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 120.00436 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.46853 * 60.00305 * 20 18 16 22 22 H 1.48503 * 109.47161 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46725 * 300.00331 * 20 18 16 24 24 C 1.39688 * 120.00763 * 0.50519 * 8 7 6 25 25 C 1.37651 * 120.00392 * 359.77366 * 24 8 7 26 26 H 1.09003 * 109.47047 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46389 * 299.99220 * 1 2 3 28 28 H 1.08996 * 109.47032 * 59.99739 * 1 2 3 29 29 H 1.08002 * 119.99841 * 0.02562 * 4 3 2 30 30 H 1.08002 * 120.00010 * 0.02562 * 6 5 4 31 31 H 1.08004 * 119.99380 * 179.72118 * 7 6 5 32 32 H 0.97001 * 119.99521 * 0.02562 * 11 9 8 33 33 H 1.08999 * 109.47243 * 300.00055 * 12 11 9 34 34 H 1.08997 * 109.47541 * 60.00125 * 12 11 9 35 35 H 1.09001 * 109.47130 * 59.99998 * 14 13 12 36 36 H 1.08994 * 109.46592 * 180.02562 * 14 13 12 37 37 H 1.09002 * 109.46532 * 299.99849 * 14 13 12 38 38 H 1.08999 * 109.46987 * 59.99818 * 15 13 12 39 39 H 1.09000 * 109.47102 * 180.02562 * 15 13 12 40 40 H 1.09001 * 109.47077 * 300.00068 * 15 13 12 41 41 H 0.97001 * 120.00042 * 179.97438 * 19 18 16 42 42 H 1.08002 * 119.99460 * 179.75166 * 24 8 7 43 43 H 1.08007 * 120.00042 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 3.2913 1.4287 0.0005 5 6 3.8917 2.7772 0.0011 6 6 5.2813 2.9233 0.0011 7 6 5.8410 4.1809 0.0079 8 6 5.0198 5.3110 0.0035 9 6 5.6211 6.6611 0.0050 10 8 4.9066 7.6446 0.0058 11 7 6.9615 6.8020 0.0055 12 6 7.5573 8.1404 0.0076 13 6 9.0826 8.0195 0.0071 14 6 9.5342 7.2582 1.2551 15 6 9.5338 7.2622 -1.2434 16 6 9.6955 9.3962 0.0086 17 1 9.0608 10.2700 0.0102 18 6 11.0667 9.5403 0.0090 19 7 11.8397 8.4763 0.0077 20 14 11.8266 11.2468 0.0116 21 1 11.3883 11.9820 1.2251 22 1 13.3070 11.1295 0.0110 23 1 11.3885 11.9855 -1.1999 24 6 3.6306 5.1650 0.0029 25 6 3.0706 3.9076 0.0019 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 3.9261 0.5549 0.0005 30 1 5.9161 2.0496 0.0002 31 1 6.9151 4.2939 0.0124 32 1 7.5316 6.0172 0.0046 33 1 7.2359 8.6825 -0.8817 34 1 7.2355 8.6800 0.8982 35 1 9.0908 6.2624 1.2536 36 1 10.6208 7.1725 1.2550 37 1 9.2127 7.7978 2.1460 38 1 9.2120 7.8046 -2.1325 39 1 10.6204 7.1757 -1.2435 40 1 9.0905 6.2664 -1.2449 41 1 12.8044 8.5777 0.0076 42 1 2.9959 6.0389 0.0036 43 1 1.9964 3.7949 0.0019 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837885825.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:19 Heat of formation + Delta-G solvation = -18.699883 kcal Electronic energy + Delta-G solvation = -23675.576472 eV Core-core repulsion = 20107.957572 eV Total energy + Delta-G solvation = -3567.618900 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28383 -39.70222 -38.43306 -38.04543 -35.38086 -34.99848 -32.90102 -32.06497 -31.44272 -27.84160 -27.53655 -27.36110 -26.78824 -25.20317 -23.50063 -22.33006 -21.10774 -20.62288 -19.16381 -18.40227 -17.80781 -17.18464 -16.84056 -16.58086 -16.30677 -16.21649 -15.93506 -15.69332 -15.32135 -14.80179 -14.65793 -14.60755 -14.41989 -13.98767 -13.92658 -13.28041 -13.18947 -13.09641 -13.02750 -12.82072 -12.65207 -12.61586 -12.22919 -12.12212 -12.11245 -11.46720 -11.31185 -11.10040 -10.99312 -10.96071 -10.68690 -10.37964 -10.04354 -10.02095 -9.55368 -8.00607 -6.15782 -0.62428 0.38290 1.07128 1.45235 1.46701 1.52924 1.65128 2.00009 2.24050 2.49861 2.89428 3.23015 3.54518 3.77412 3.82748 3.96181 4.26855 4.33514 4.43691 4.46510 4.50320 4.52025 4.55592 4.68841 4.75149 4.78608 4.99349 5.01781 5.07419 5.07705 5.13404 5.21761 5.25537 5.33478 5.35809 5.44462 5.57233 5.69470 5.69839 5.78793 6.18037 6.23252 6.42761 6.45413 6.61845 6.87569 7.23241 7.51491 8.98022 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.041976 B = 0.002310 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.890374 B =12120.739955 C =12591.260354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.262 6.262 3 N -0.362 5.362 4 C 0.156 3.844 5 C -0.042 4.042 6 C -0.074 4.074 7 C -0.088 4.088 8 C -0.126 4.126 9 C 0.543 3.457 10 O -0.589 6.589 11 N -0.701 5.701 12 C 0.146 3.854 13 C 0.050 3.950 14 C -0.122 4.122 15 C -0.122 4.122 16 C -0.529 4.529 17 H 0.044 0.956 18 C 0.029 3.971 19 N -0.897 5.897 20 Si 0.943 3.057 21 H -0.278 1.278 22 H -0.283 1.283 23 H -0.278 1.278 24 C -0.078 4.078 25 C -0.090 4.090 26 H 0.122 0.878 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.156 0.844 30 H 0.178 0.822 31 H 0.151 0.849 32 H 0.410 0.590 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.064 0.936 37 H 0.017 0.983 38 H 0.017 0.983 39 H 0.064 0.936 40 H 0.039 0.961 41 H 0.260 0.740 42 H 0.128 0.872 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.752 -18.981 -0.011 24.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.276 6.276 3 N -0.108 5.108 4 C -0.053 4.053 5 C -0.043 4.043 6 C -0.094 4.094 7 C -0.106 4.106 8 C -0.130 4.130 9 C 0.332 3.668 10 O -0.471 6.471 11 N -0.352 5.352 12 C 0.022 3.978 13 C 0.050 3.950 14 C -0.180 4.180 15 C -0.179 4.179 16 C -0.567 4.567 17 H 0.062 0.938 18 C -0.171 4.171 19 N -0.536 5.536 20 Si 0.770 3.230 21 H -0.204 1.204 22 H -0.208 1.208 23 H -0.204 1.204 24 C -0.097 4.097 25 C -0.110 4.110 26 H 0.140 0.860 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.173 0.827 30 H 0.195 0.805 31 H 0.168 0.832 32 H 0.249 0.751 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.146 0.854 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.837 -18.151 -0.010 24.089 hybrid contribution 1.057 0.726 0.001 1.283 sum -14.780 -17.424 -0.009 22.849 Atomic orbital electron populations 1.22948 0.77109 1.04233 1.01338 1.89805 1.23930 1.20089 1.93804 1.76612 1.14983 1.04828 1.14382 1.24494 0.92091 0.97144 0.91562 1.18720 0.93687 0.90155 1.01750 1.21495 0.92994 0.98306 0.96607 1.21499 1.00692 0.91305 0.97129 1.20091 0.95066 0.92248 1.05606 1.18847 0.82430 0.89504 0.76062 1.90722 1.62089 1.41725 1.52568 1.46046 1.06013 1.10378 1.72797 1.21342 0.94919 0.82344 0.99173 1.18376 0.87955 0.95001 0.93698 1.21685 1.02879 0.96740 0.96648 1.21685 1.02871 0.96739 0.96646 1.21227 0.91819 0.92345 1.51338 0.93816 1.25427 0.97527 0.99398 0.94763 1.69886 1.04191 1.28922 1.50553 0.85847 0.77322 0.81447 0.78346 1.20381 1.20804 1.20390 1.21202 0.93481 0.98314 0.96725 1.21371 1.00944 0.90816 0.97820 0.86046 0.93062 0.93067 0.82715 0.80475 0.83151 0.75134 0.94136 0.94129 0.94168 0.91729 0.96363 0.96359 0.91735 0.94184 0.93005 0.85408 0.84127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 11.47 113.37 1.30 1.79 16 2 O -0.26 -5.00 11.72 -38.79 -0.45 -5.45 16 3 N -0.36 -7.08 10.45 -52.27 -0.55 -7.62 16 4 C 0.16 2.36 10.90 87.54 0.95 3.32 16 5 C -0.04 -0.68 5.87 -20.09 -0.12 -0.80 16 6 C -0.07 -1.00 9.77 22.49 0.22 -0.78 16 7 C -0.09 -1.62 9.52 22.48 0.21 -1.41 16 8 C -0.13 -3.28 5.88 -20.05 -0.12 -3.40 16 9 C 0.54 18.78 7.77 86.77 0.67 19.46 16 10 O -0.59 -25.17 16.33 -3.91 -0.06 -25.23 16 11 N -0.70 -23.80 4.91 -466.01 -2.29 -26.09 16 12 C 0.15 6.14 4.50 86.38 0.39 6.53 16 13 C 0.05 2.27 0.50 -52.92 -0.03 2.25 16 14 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 15 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 16 C -0.53 -27.59 8.01 25.60 0.21 -27.39 16 17 H 0.04 2.34 7.74 -2.91 -0.02 2.31 16 18 C 0.03 1.50 5.15 84.65 0.44 1.93 16 19 N -0.90 -46.88 9.35 21.45 0.20 -46.68 16 20 Si 0.94 42.22 29.54 68.60 2.03 44.25 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 24 C -0.08 -1.91 9.58 22.48 0.22 -1.70 16 25 C -0.09 -1.78 9.56 22.49 0.21 -1.57 16 26 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 29 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 30 H 0.18 0.99 8.06 -2.91 -0.02 0.96 16 31 H 0.15 2.28 6.38 -2.91 -0.02 2.26 16 32 H 0.41 11.62 4.18 -92.71 -0.39 11.23 16 33 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 36 H 0.06 3.09 6.07 -2.39 -0.01 3.07 16 37 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.06 3.09 6.07 -2.39 -0.01 3.07 16 40 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 41 H 0.26 13.16 8.31 -92.71 -0.77 12.39 16 42 H 0.13 3.36 7.64 -2.91 -0.02 3.33 16 43 H 0.14 2.63 7.54 -2.91 -0.02 2.61 16 Total: -1.00 -65.63 359.02 5.23 -60.40 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.63 Total: 17.48 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 5.72 Total: -11.05 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -2.63 Total: -80.39 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.52 Total: -30.69 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -65.63 5.23 -60.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837885825.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.701 kcal (2) G-P(sol) polarization free energy of solvation -65.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds