Wall clock time and date at job start Tue Mar 31 2020 08:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47456 * 2 1 4 4 C 1.53000 * 109.47529 * 120.00384 * 2 1 3 5 5 H 1.08999 * 115.55771 * 274.30898 * 4 2 1 6 6 C 1.53076 * 117.49477 * 128.60026 * 4 2 1 7 7 C 1.53002 * 117.49658 * 59.99681 * 4 2 1 8 8 H 1.08996 * 117.50199 * 359.97438 * 7 4 2 9 9 N 1.46498 * 117.49678 * 214.98153 * 7 4 2 10 10 C 1.34777 * 120.00256 * 155.09145 * 9 7 4 11 11 O 1.21591 * 119.99699 * 359.97438 * 10 9 7 12 12 N 1.34776 * 120.00341 * 180.02562 * 10 9 7 13 13 C 1.39945 * 119.99840 * 174.74030 * 12 10 9 14 14 C 1.38956 * 120.03553 * 326.30490 * 13 12 10 15 15 C 1.38163 * 120.06788 * 180.02562 * 14 13 12 16 16 C 1.38173 * 120.13460 * 359.70839 * 15 14 13 17 17 C 1.38906 * 120.06767 * 0.54590 * 16 15 14 18 18 O 1.35755 * 120.03227 * 179.74823 * 17 16 15 19 19 C 1.34831 * 117.00291 * 185.64552 * 18 17 16 20 20 H 1.07998 * 119.99895 * 5.39784 * 19 18 17 21 21 C 1.38656 * 120.00186 * 185.40464 * 19 18 17 22 22 N 1.31549 * 119.99785 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99903 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47113 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47206 * 299.99650 * 23 21 19 26 26 H 1.48500 * 109.47217 * 59.99776 * 23 21 19 27 27 C 1.38708 * 120.03404 * 146.33257 * 13 12 10 28 28 H 1.09009 * 109.46925 * 299.99731 * 1 2 3 29 29 H 1.09001 * 109.47139 * 59.99596 * 1 2 3 30 30 H 1.09000 * 109.47160 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47300 * 240.00659 * 2 1 3 32 32 H 1.09000 * 109.47880 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47277 * 300.00320 * 3 2 1 34 34 H 1.09000 * 109.46917 * 59.99942 * 3 2 1 35 35 H 1.09001 * 117.51028 * 145.04288 * 6 4 2 36 36 H 1.09000 * 117.51505 * 359.97438 * 6 4 2 37 37 H 0.97004 * 120.00435 * 335.09010 * 9 7 4 38 38 H 0.97001 * 119.99815 * 354.74346 * 12 10 9 39 39 H 1.07998 * 119.96687 * 0.02562 * 14 13 12 40 40 H 1.07992 * 119.93261 * 179.97438 * 15 14 13 41 41 H 1.07995 * 119.96246 * 180.27411 * 16 15 14 42 42 H 0.97005 * 120.00161 * 0.02562 * 22 21 19 43 43 H 1.08004 * 120.06458 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 2.1272 -0.1062 2.1448 6 6 3.0743 -1.8322 1.0509 7 6 1.6357 -2.1853 1.4341 8 1 1.0060 -2.6344 0.6662 9 7 1.3954 -2.6531 2.8014 10 6 0.5863 -3.7085 3.0202 11 8 0.0555 -4.2722 2.0827 12 7 0.3647 -4.1386 4.2782 13 6 -0.5595 -5.1624 4.5150 14 6 -1.6950 -5.2717 3.7216 15 6 -2.6081 -6.2819 3.9552 16 6 -2.3924 -7.1899 4.9741 17 6 -1.2619 -7.0828 5.7740 18 8 -1.0533 -7.9723 6.7781 19 6 -0.0009 -7.7440 7.5894 20 1 0.5791 -6.8396 7.4799 21 6 0.3369 -8.6704 8.5642 22 7 -0.3698 -9.7719 8.6978 23 14 1.7954 -8.3544 9.6877 24 1 1.9443 -9.4872 10.6361 25 1 3.0297 -8.2256 8.8721 26 1 1.5715 -7.0988 10.4483 27 6 -0.3432 -6.0688 5.5425 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.8418 -1.9480 1.8162 36 1 3.3909 -2.0493 0.0307 37 1 1.8185 -2.2032 3.5495 38 1 0.8458 -3.7384 5.0193 39 1 -1.8639 -4.5662 2.9215 40 1 -3.4900 -6.3645 3.3375 41 1 -3.1058 -7.9811 5.1514 42 1 -1.1269 -9.9362 8.1141 43 1 0.5386 -5.9859 6.1605 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838761817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:56 Heat of formation + Delta-G solvation = -40.211751 kcal Electronic energy + Delta-G solvation = -23851.097686 eV Core-core repulsion = 20282.545961 eV Total energy + Delta-G solvation = -3568.551724 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.79739 -40.66006 -39.41399 -38.19381 -35.73262 -35.40923 -34.23763 -33.02090 -30.96041 -30.00558 -27.99989 -26.92172 -24.61692 -23.79695 -23.54983 -22.60269 -21.93987 -20.94865 -20.28655 -19.52807 -19.00094 -17.63901 -17.05526 -16.81652 -16.37568 -16.16355 -16.03391 -15.68022 -15.51567 -15.40081 -15.07717 -14.83035 -14.43244 -13.98910 -13.74206 -13.55357 -13.28010 -13.07501 -13.01504 -12.71980 -12.49271 -12.38464 -12.29330 -12.15194 -11.93239 -11.86148 -11.61688 -11.52372 -11.40453 -11.19525 -10.95599 -10.70631 -9.80180 -9.38672 -8.93610 -8.90992 -6.23415 0.37163 0.63459 1.41525 1.49809 1.62318 1.79585 1.92308 2.37009 2.82443 2.92056 3.00949 3.13762 3.31776 3.71311 3.78232 3.98388 4.04870 4.13617 4.27044 4.36041 4.40166 4.43653 4.56572 4.63610 4.67370 4.77065 4.84068 4.91425 4.94534 4.99347 5.07358 5.20702 5.21074 5.27417 5.28677 5.41232 5.43654 5.45730 5.54596 5.61572 5.67383 5.88669 6.06494 6.27812 6.86899 6.88165 7.38249 7.62791 8.52230 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021064 B = 0.002727 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.947553 B =10265.428443 C =11336.643651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C -0.141 4.141 4 C -0.134 4.134 5 H 0.118 0.882 6 C -0.179 4.179 7 C 0.079 3.921 8 H 0.116 0.884 9 N -0.696 5.696 10 C 0.705 3.295 11 O -0.609 6.609 12 N -0.673 5.673 13 C 0.207 3.793 14 C -0.197 4.197 15 C -0.050 4.050 16 C -0.215 4.215 17 C 0.137 3.863 18 O -0.246 6.246 19 C -0.486 4.486 20 H 0.093 0.907 21 C -0.045 4.045 22 N -0.917 5.917 23 Si 1.145 2.855 24 H -0.276 1.276 25 H -0.261 1.261 26 H -0.257 1.257 27 C -0.259 4.259 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.414 0.586 38 H 0.420 0.580 39 H 0.131 0.869 40 H 0.156 0.844 41 H 0.121 0.879 42 H 0.260 0.740 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.149 23.563 -14.249 28.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 C -0.198 4.198 4 C -0.154 4.154 5 H 0.136 0.864 6 C -0.217 4.217 7 C -0.027 4.027 8 H 0.134 0.866 9 N -0.350 5.350 10 C 0.406 3.594 11 O -0.488 6.488 12 N -0.321 5.321 13 C 0.112 3.888 14 C -0.218 4.218 15 C -0.069 4.069 16 C -0.235 4.235 17 C 0.086 3.914 18 O -0.153 6.153 19 C -0.562 4.562 20 H 0.110 0.890 21 C -0.241 4.241 22 N -0.552 5.552 23 Si 0.960 3.040 24 H -0.201 1.201 25 H -0.185 1.185 26 H -0.182 1.182 27 C -0.280 4.280 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.251 0.749 38 H 0.258 0.742 39 H 0.148 0.852 40 H 0.174 0.826 41 H 0.139 0.861 42 H 0.069 0.931 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.447 22.279 -13.782 27.235 hybrid contribution -0.728 0.483 -0.524 1.019 sum 6.719 22.762 -14.306 27.711 Atomic orbital electron populations 1.21817 0.95367 1.01228 1.02002 1.20733 0.95305 0.96733 0.95641 1.21776 1.01355 0.94499 1.02169 1.23000 1.01720 0.89824 1.00807 0.86360 1.23732 0.92258 1.01756 1.03969 1.21553 0.99439 0.97988 0.83713 0.86626 1.44281 1.50020 1.31430 1.09250 1.15952 0.79968 0.80906 0.82600 1.90916 1.55428 1.59827 1.42607 1.42415 1.43682 1.37784 1.08247 1.17169 0.88809 0.88004 0.94835 1.20896 0.94591 1.03024 1.03260 1.20930 0.98841 0.92172 0.94909 1.20479 0.98201 1.04595 1.00232 1.19467 0.94320 0.89399 0.88198 1.83691 1.47685 1.46602 1.37370 1.22562 1.09181 1.09639 1.14808 0.88963 1.28392 1.05405 0.91470 0.98864 1.70705 1.18947 1.26253 1.39272 0.82590 0.70309 0.77167 0.73886 1.20088 1.18537 1.18166 1.20806 1.03051 0.99041 1.05146 0.92793 0.91890 0.94011 0.90807 0.92012 0.92121 0.92476 0.87500 0.87305 0.74903 0.74227 0.85152 0.82644 0.86052 0.93111 0.85385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.03 71.98 0.65 -1.33 16 2 C -0.07 -0.73 3.07 -10.80 -0.03 -0.77 16 3 C -0.14 -1.22 9.18 71.98 0.66 -0.56 16 4 C -0.13 -1.59 5.08 -10.77 -0.05 -1.64 16 5 H 0.12 1.15 8.11 -2.39 -0.02 1.14 16 6 C -0.18 -2.24 10.11 30.62 0.31 -1.93 16 7 C 0.08 1.41 5.63 45.00 0.25 1.67 16 8 H 0.12 2.66 6.86 -2.39 -0.02 2.65 16 9 N -0.70 -13.45 5.57 -457.80 -2.55 -16.00 16 10 C 0.70 20.41 8.30 179.05 1.49 21.90 16 11 O -0.61 -22.69 13.61 -4.00 -0.05 -22.75 16 12 N -0.67 -19.47 5.35 -317.23 -1.70 -21.16 16 13 C 0.21 7.84 6.27 38.13 0.24 8.08 16 14 C -0.20 -7.35 8.65 22.42 0.19 -7.16 16 15 C -0.05 -1.82 10.03 22.24 0.22 -1.60 16 16 C -0.22 -9.32 9.99 22.41 0.22 -9.09 16 17 C 0.14 6.86 6.64 22.56 0.15 7.01 16 18 O -0.25 -14.56 9.16 -22.80 -0.21 -14.77 16 19 C -0.49 -28.05 9.44 67.92 0.64 -27.40 16 20 H 0.09 4.89 5.30 -2.91 -0.02 4.87 16 21 C -0.05 -2.57 5.49 84.84 0.47 -2.10 16 22 N -0.92 -57.24 13.70 21.61 0.30 -56.94 16 23 Si 1.14 47.22 29.92 68.60 2.05 49.27 16 24 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 25 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 26 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 27 C -0.26 -11.42 9.04 22.51 0.20 -11.21 16 28 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.04 0.71 7.29 -2.39 -0.02 0.69 16 31 H 0.07 0.83 7.90 -2.38 -0.02 0.81 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.11 1.16 8.14 -2.39 -0.02 1.15 16 36 H 0.11 1.25 8.05 -2.39 -0.02 1.23 16 37 H 0.41 5.19 8.85 -92.71 -0.82 4.37 16 38 H 0.42 9.09 8.83 -92.71 -0.82 8.27 16 39 H 0.13 4.73 6.43 -2.91 -0.02 4.71 16 40 H 0.16 4.42 8.06 -2.91 -0.02 4.40 16 41 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 42 H 0.26 16.97 7.97 -92.70 -0.74 16.24 16 43 H 0.13 5.61 5.71 -2.91 -0.02 5.59 16 Total: -1.00 -75.95 360.86 2.89 -73.06 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: -0.56 Total: 35.42 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 5.61 Total: -26.14 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -3.95 Total: -94.10 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -0.26 Total: -37.52 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.05 Total: 49.27 kcal Total: -75.95 2.89 -73.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838761817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.851 kcal (2) G-P(sol) polarization free energy of solvation -75.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds