Wall clock time and date at job start Tue Mar 31 2020 09:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31754 * 1 3 3 O 1.35639 * 120.00381 * 2 1 4 4 C 1.35953 * 118.00319 * 174.97621 * 3 2 1 5 5 C 1.38744 * 119.98588 * 184.95994 * 4 3 2 6 6 C 1.38092 * 120.00677 * 179.76894 * 5 4 3 7 7 C 1.38850 * 119.98633 * 0.50953 * 6 5 4 8 8 N 1.40127 * 120.00660 * 179.72187 * 7 6 5 9 9 C 1.34773 * 119.99881 * 215.13175 * 8 7 6 10 10 O 1.21593 * 120.00116 * 355.45779 * 9 8 7 11 11 N 1.34776 * 120.00079 * 175.45966 * 9 8 7 12 12 C 1.46507 * 119.99965 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.46867 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47340 * 299.99577 * 13 12 11 15 15 C 1.52999 * 109.47222 * 60.00125 * 13 12 11 16 16 C 1.50700 * 109.46977 * 179.97438 * 13 12 11 17 17 H 1.08003 * 120.00268 * 359.97438 * 16 13 12 18 18 C 1.37873 * 120.00166 * 179.97438 * 16 13 12 19 19 N 1.31511 * 119.99979 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 120.00106 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47265 * 90.00253 * 20 18 16 22 22 H 1.48507 * 109.47083 * 210.00317 * 20 18 16 23 23 H 1.48503 * 109.47213 * 329.99862 * 20 18 16 24 24 C 1.38848 * 119.97712 * 359.74587 * 7 6 5 25 25 C 1.38077 * 119.98775 * 0.02562 * 24 7 6 26 26 H 1.07998 * 120.00198 * 180.02562 * 1 2 3 27 27 H 1.07994 * 119.99813 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.00099 * 180.02562 * 2 1 3 29 29 H 1.07996 * 119.99916 * 0.03041 * 5 4 3 30 30 H 1.07996 * 120.00377 * 180.26087 * 6 5 4 31 31 H 0.97002 * 120.00530 * 35.14030 * 8 7 6 32 32 H 0.97001 * 120.00274 * 359.97438 * 11 9 8 33 33 H 1.09003 * 109.46785 * 299.99649 * 12 11 9 34 34 H 1.08996 * 109.47325 * 59.99524 * 12 11 9 35 35 H 1.09003 * 109.47004 * 59.99978 * 14 13 12 36 36 H 1.09000 * 109.47591 * 180.02562 * 14 13 12 37 37 H 1.09005 * 109.47298 * 300.00313 * 14 13 12 38 38 H 1.08989 * 109.47522 * 59.99621 * 15 13 12 39 39 H 1.09000 * 109.46872 * 180.02562 * 15 13 12 40 40 H 1.09008 * 109.46851 * 299.99308 * 15 13 12 41 41 H 0.97007 * 120.00322 * 179.97438 * 19 18 16 42 42 H 1.08002 * 120.00212 * 179.97438 * 24 7 6 43 43 H 1.08004 * 119.99105 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3175 0.0000 0.0000 3 8 1.9958 1.1746 0.0000 4 6 3.3505 1.1295 0.1051 5 6 4.0773 2.3064 0.2130 6 6 5.4529 2.2608 0.3246 7 6 6.1096 1.0374 0.3182 8 7 7.5059 0.9910 0.4255 9 6 8.2018 0.0474 -0.2391 10 8 7.6141 -0.8136 -0.8650 11 7 9.5492 0.0580 -0.2098 12 6 10.3057 -0.9675 -0.9327 13 6 11.8042 -0.7280 -0.7378 14 6 12.1743 0.6546 -1.2784 15 6 12.1426 -0.8004 0.7525 16 6 12.5824 -1.7832 -1.4809 17 1 12.0603 -2.5484 -2.0363 18 6 13.9607 -1.7718 -1.4518 19 7 14.5965 -0.8404 -0.7751 20 14 14.9253 -3.0793 -2.3734 21 1 15.1983 -2.6107 -3.7558 22 1 16.2105 -3.3319 -1.6735 23 1 14.1340 -4.3350 -2.4235 24 6 5.3821 -0.1398 0.2048 25 6 4.0062 -0.0933 0.0981 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5399 0.9353 0.0004 28 1 1.8576 -0.9353 -0.0004 29 1 3.5668 3.2581 0.2140 30 1 6.0182 3.1768 0.4128 31 1 7.9717 1.6379 0.9782 32 1 10.0182 0.7450 0.2892 33 1 10.0417 -1.9526 -0.5479 34 1 10.0649 -0.9158 -1.9945 35 1 11.6115 1.4176 -0.7406 36 1 13.2420 0.8250 -1.1399 37 1 11.9332 0.7061 -2.3402 38 1 11.8790 -1.7853 1.1376 39 1 13.2101 -0.6293 0.8914 40 1 11.5798 -0.0373 1.2904 41 1 15.5663 -0.8326 -0.7543 42 1 5.8925 -1.0916 0.1994 43 1 3.4404 -1.0089 0.0095 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839159973.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:15 Heat of formation + Delta-G solvation = -25.374607 kcal Electronic energy + Delta-G solvation = -23974.120900 eV Core-core repulsion = 20406.212562 eV Total energy + Delta-G solvation = -3567.908338 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.87593 -41.14098 -39.12970 -38.02659 -35.54259 -35.00413 -33.05398 -32.56100 -31.98449 -29.56537 -27.54695 -27.42837 -26.60261 -24.64971 -23.87895 -21.96230 -21.56185 -20.60855 -19.87494 -19.53272 -18.46400 -17.77862 -17.05992 -16.65286 -16.44824 -16.38176 -16.06737 -15.70774 -15.36390 -14.99930 -14.76294 -14.73385 -14.45770 -14.15464 -13.99274 -13.57234 -13.46576 -13.18161 -13.09278 -12.82116 -12.68691 -12.59094 -12.24629 -12.13204 -11.89569 -11.49092 -11.45607 -11.22534 -11.05790 -10.69718 -10.39344 -10.17438 -10.03047 -9.88367 -8.64297 -8.01746 -6.16937 0.17701 0.33140 1.37009 1.42911 1.45985 1.53467 1.65149 2.07677 2.15249 2.46466 2.79252 3.22071 3.28370 3.65951 3.84118 4.03929 4.25852 4.37731 4.42039 4.51264 4.53743 4.71971 4.77985 4.95109 4.97948 5.02638 5.07317 5.09908 5.19656 5.21471 5.28038 5.32693 5.36400 5.44196 5.52850 5.60019 5.68570 5.68776 5.90706 6.01394 6.16902 6.22991 6.44503 6.62830 6.87234 7.04299 7.50325 7.51829 8.97042 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.036744 B = 0.002372 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.854487 B =11803.049174 C =12298.419388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 O -0.266 6.266 4 C 0.085 3.915 5 C -0.122 4.122 6 C -0.100 4.100 7 C 0.125 3.875 8 N -0.672 5.672 9 C 0.696 3.304 10 O -0.621 6.621 11 N -0.718 5.718 12 C 0.167 3.833 13 C 0.051 3.949 14 C -0.120 4.120 15 C -0.120 4.120 16 C -0.526 4.526 17 H 0.045 0.955 18 C 0.027 3.973 19 N -0.898 5.898 20 Si 0.944 3.056 21 H -0.280 1.280 22 H -0.283 1.283 23 H -0.276 1.276 24 C -0.103 4.103 25 C -0.186 4.186 26 H 0.149 0.851 27 H 0.105 0.895 28 H 0.141 0.859 29 H 0.159 0.841 30 H 0.167 0.833 31 H 0.424 0.576 32 H 0.408 0.592 33 H 0.039 0.961 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.062 0.938 37 H 0.017 0.983 38 H 0.018 0.982 39 H 0.062 0.938 40 H 0.038 0.962 41 H 0.260 0.740 42 H 0.122 0.878 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.737 7.932 5.856 22.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.071 4.071 3 O -0.177 6.177 4 C 0.041 3.959 5 C -0.141 4.141 6 C -0.120 4.120 7 C 0.030 3.970 8 N -0.322 5.322 9 C 0.397 3.603 10 O -0.502 6.502 11 N -0.373 5.373 12 C 0.043 3.957 13 C 0.050 3.950 14 C -0.178 4.178 15 C -0.178 4.178 16 C -0.565 4.565 17 H 0.063 0.937 18 C -0.172 4.172 19 N -0.537 5.537 20 Si 0.771 3.229 21 H -0.206 1.206 22 H -0.209 1.209 23 H -0.201 1.201 24 C -0.123 4.123 25 C -0.205 4.205 26 H 0.167 0.833 27 H 0.123 0.877 28 H 0.158 0.842 29 H 0.177 0.823 30 H 0.184 0.816 31 H 0.262 0.738 32 H 0.245 0.755 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.140 0.860 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -21.059 7.383 5.309 22.938 hybrid contribution 1.350 -0.695 -0.232 1.536 sum -19.709 6.688 5.077 21.423 Atomic orbital electron populations 1.23846 0.92832 1.04474 1.05382 1.22927 0.94034 0.88061 1.02057 1.84318 1.16991 1.32333 1.84050 1.19170 0.81464 0.94851 1.00424 1.20494 0.92806 0.97170 1.03625 1.20983 0.93666 0.96591 1.00758 1.17712 0.81863 0.94263 1.03146 1.42372 1.04745 1.34507 1.50554 1.16152 0.82295 0.82056 0.79838 1.90869 1.69534 1.40284 1.49486 1.45202 1.03441 1.33606 1.55070 1.21176 0.91873 0.88757 0.93910 1.18372 0.88271 0.94350 0.93979 1.21668 1.02453 0.96137 0.97558 1.21665 1.02419 0.97660 0.96056 1.21254 0.91682 1.12326 1.31251 0.93719 1.25441 0.98405 0.97361 0.96033 1.69902 1.08147 1.33928 1.41709 0.85776 0.78204 0.80090 0.78821 1.20572 1.20896 1.20120 1.21122 0.93315 0.98622 0.99275 1.21232 0.94607 0.97964 1.06648 0.83308 0.87695 0.84192 0.82336 0.81571 0.73786 0.75476 0.94297 0.94420 0.94277 0.91931 0.96383 0.96307 0.91947 0.94294 0.93055 0.85970 0.83725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.04 14.63 67.09 0.98 -2.06 16 2 C -0.01 -0.19 10.00 67.09 0.67 0.48 16 3 O -0.27 -5.66 10.01 -33.58 -0.34 -6.00 16 4 C 0.08 1.86 6.66 22.51 0.15 2.01 16 5 C -0.12 -2.25 9.98 22.36 0.22 -2.03 16 6 C -0.10 -1.81 9.96 22.38 0.22 -1.58 16 7 C 0.13 3.06 6.30 38.11 0.24 3.30 16 8 N -0.67 -16.16 5.35 -317.06 -1.70 -17.85 16 9 C 0.70 23.14 8.41 179.06 1.51 24.64 16 10 O -0.62 -25.76 13.78 -4.01 -0.06 -25.81 16 11 N -0.72 -23.63 4.96 -478.52 -2.37 -26.00 16 12 C 0.17 6.93 4.50 86.38 0.39 7.32 16 13 C 0.05 2.29 0.50 -52.93 -0.03 2.27 16 14 C -0.12 -5.19 8.08 71.98 0.58 -4.60 16 15 C -0.12 -5.16 8.08 71.98 0.58 -4.58 16 16 C -0.53 -27.41 8.01 25.60 0.21 -27.21 16 17 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 18 C 0.03 1.43 5.15 84.65 0.44 1.86 16 19 N -0.90 -47.18 9.35 21.45 0.20 -46.98 16 20 Si 0.94 42.27 29.54 68.60 2.03 44.30 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 C -0.10 -2.85 8.69 22.38 0.19 -2.65 16 25 C -0.19 -4.34 9.19 22.35 0.21 -4.13 16 26 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 27 H 0.10 1.40 8.06 -2.91 -0.02 1.38 16 28 H 0.14 1.98 5.57 -2.91 -0.02 1.96 16 29 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 30 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 31 H 0.42 6.87 8.84 -92.71 -0.82 6.05 16 32 H 0.41 11.24 6.18 -92.71 -0.57 10.67 16 33 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 36 H 0.06 3.02 6.07 -2.39 -0.01 3.00 16 37 H 0.02 0.76 8.14 -2.38 -0.02 0.75 16 38 H 0.02 0.79 8.14 -2.39 -0.02 0.78 16 39 H 0.06 3.01 6.07 -2.39 -0.01 2.99 16 40 H 0.04 1.37 6.86 -2.38 -0.02 1.35 16 41 H 0.26 13.18 8.31 -92.70 -0.77 12.41 16 42 H 0.12 4.01 6.22 -2.91 -0.02 3.99 16 43 H 0.15 2.80 5.71 -2.91 -0.02 2.79 16 Total: -1.00 -63.99 351.70 3.98 -60.02 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: -0.35 Total: 25.30 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 6.56 Total: -6.97 kcal Atomic # 7 Polarization: -86.97 SS G_CDS: -3.87 Total: -90.84 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.39 Total: -31.81 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -63.99 3.98 -60.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839159973.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.642 kcal (2) G-P(sol) polarization free energy of solvation -63.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds