Wall clock time and date at job start Tue Mar 31 2020 09:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47112 * 2 1 4 4 H 1.09000 * 109.47739 * 305.01844 * 3 2 1 5 5 C 1.53099 * 109.48120 * 185.00141 * 3 2 1 6 6 C 1.53178 * 109.16243 * 182.40484 * 5 3 2 7 7 H 1.08996 * 109.53757 * 176.93292 * 6 5 3 8 8 C 1.50693 * 109.54348 * 297.10951 * 6 5 3 9 9 O 1.21268 * 120.00395 * 0.02562 * 8 6 5 10 10 N 1.34779 * 119.99954 * 179.97438 * 8 6 5 11 11 C 1.39264 * 120.00099 * 185.51847 * 10 8 6 12 12 C 1.39672 * 119.57310 * 174.99367 * 11 10 8 13 13 C 1.38659 * 119.49383 * 180.02562 * 12 11 10 14 14 C 1.38343 * 118.66863 * 359.97438 * 13 12 11 15 15 C 1.40575 * 119.13501 * 0.02562 * 14 13 12 16 16 C 1.41331 * 119.79311 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99696 * 6.04125 * 16 15 14 18 18 C 1.40028 * 120.00483 * 186.03026 * 16 15 14 19 19 N 1.30742 * 119.99649 * 5.84631 * 18 16 15 20 20 Si 1.86794 * 120.00293 * 185.84405 * 18 16 15 21 21 H 1.48497 * 109.47243 * 85.00315 * 20 18 16 22 22 H 1.48503 * 109.47193 * 204.99900 * 20 18 16 23 23 H 1.48500 * 109.47195 * 325.00087 * 20 18 16 24 24 N 1.31905 * 119.57626 * 355.01683 * 11 10 8 25 25 C 1.53173 * 109.03530 * 56.98233 * 6 5 3 26 26 C 1.53091 * 109.16383 * 303.01318 * 25 6 5 27 27 O 1.42895 * 109.48423 * 65.05743 * 3 2 1 28 28 H 1.08996 * 109.47103 * 300.00310 * 1 2 3 29 29 H 1.09001 * 109.46896 * 60.00089 * 1 2 3 30 30 H 1.08999 * 109.46862 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47103 * 239.99690 * 2 1 3 32 32 H 1.08997 * 109.47085 * 119.99441 * 2 1 3 33 33 H 1.08997 * 109.52023 * 62.49983 * 5 3 2 34 34 H 1.09005 * 109.52075 * 302.31057 * 5 3 2 35 35 H 0.96998 * 119.99940 * 5.52008 * 10 8 6 36 36 H 1.07999 * 120.25657 * 0.04419 * 12 11 10 37 37 H 1.07997 * 120.66312 * 180.02562 * 13 12 11 38 38 H 1.08001 * 120.43589 * 180.02562 * 14 13 12 39 39 H 0.97000 * 120.00235 * 179.97438 * 19 18 16 40 40 H 1.08994 * 109.53114 * 62.92106 * 25 6 5 41 41 H 1.08998 * 109.52227 * 183.11369 * 25 6 5 42 42 H 1.09001 * 109.48266 * 297.63009 * 26 25 6 43 43 H 1.09003 * 109.49526 * 177.59839 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9817 -0.8416 5 6 3.5658 1.4446 -0.1258 6 6 4.0734 2.8885 -0.0646 7 1 5.1628 2.8937 -0.0989 8 6 3.5284 3.6645 -1.2358 9 8 2.8047 3.1183 -2.0411 10 7 3.8445 4.9658 -1.3878 11 6 3.2513 5.7126 -2.4026 12 6 3.5043 7.0836 -2.4876 13 6 2.9123 7.8257 -3.4983 14 6 2.0837 7.1794 -4.3980 15 6 1.8686 5.7971 -4.2593 16 6 1.0242 5.1230 -5.1703 17 1 0.6247 5.6474 -6.0257 18 6 0.7058 3.7751 -4.9640 19 7 1.0943 3.1715 -3.8713 20 14 -0.2741 2.8394 -6.2499 21 1 0.6473 2.3152 -7.2898 22 1 -0.9858 1.7078 -5.6033 23 1 -1.2630 3.7514 -6.8791 24 7 2.4573 5.1162 -3.2708 25 6 3.5970 3.5306 1.2419 26 6 2.0700 3.4480 1.3148 27 8 1.6633 2.0812 1.2215 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.8534 0.9974 -1.0773 34 1 3.9996 0.8709 0.6933 35 1 4.4853 5.3822 -0.7904 36 1 4.1563 7.5621 -1.7717 37 1 3.0952 8.8868 -3.5819 38 1 1.6082 7.7296 -5.1965 39 1 0.8735 2.2378 -3.7282 40 1 4.0313 2.9992 2.0886 41 1 3.9069 4.5753 1.2685 42 1 1.6356 4.0137 0.4906 43 1 1.7280 3.8651 2.2621 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882472989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:26 Heat of formation + Delta-G solvation = -58.691124 kcal Electronic energy + Delta-G solvation = -26311.431327 eV Core-core repulsion = 22742.078276 eV Total energy + Delta-G solvation = -3569.353050 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.63519 -40.14849 -38.74001 -35.95087 -35.12104 -34.67843 -34.47743 -32.21518 -30.96053 -30.62257 -27.60798 -26.70503 -24.73187 -24.10296 -23.24058 -22.36109 -21.94099 -20.32735 -19.38759 -17.98202 -17.38317 -17.29044 -17.10661 -16.49820 -16.27505 -16.05968 -15.57575 -15.41478 -15.04883 -14.70839 -14.61556 -14.46012 -14.24058 -13.96922 -13.76330 -13.23948 -12.98652 -12.89805 -12.74646 -12.72296 -12.57804 -12.49815 -12.32827 -12.06073 -11.83767 -11.79922 -11.59195 -11.48441 -11.17438 -10.82854 -10.58240 -10.13093 -9.89641 -9.04512 -8.79745 -8.10050 -6.40616 0.92466 1.25035 1.37494 1.48891 1.50837 2.16141 2.24630 2.36958 2.89833 2.98505 3.64214 3.76339 3.86471 3.99242 4.06400 4.13041 4.29204 4.29837 4.40323 4.48942 4.55018 4.65813 4.73026 4.75967 4.86185 4.89400 4.95538 4.97293 4.97432 5.02472 5.07581 5.08103 5.13847 5.19985 5.27428 5.35739 5.46347 5.68827 5.87350 5.92976 6.15851 6.35924 6.38334 6.76060 6.86020 7.08750 7.74083 8.34758 8.54841 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.011901 B = 0.006782 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.211756 B = 4127.839306 C = 5985.845834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C 0.076 3.924 4 H 0.048 0.952 5 C -0.120 4.120 6 C -0.103 4.103 7 H 0.125 0.875 8 C 0.463 3.537 9 O -0.452 6.452 10 N -0.655 5.655 11 C 0.351 3.649 12 C -0.347 4.347 13 C -0.035 4.035 14 C -0.333 4.333 15 C 0.240 3.760 16 C -0.468 4.468 17 H 0.082 0.918 18 C 0.016 3.984 19 N -0.687 5.687 20 Si 0.969 3.031 21 H -0.268 1.268 22 H -0.272 1.272 23 H -0.257 1.257 24 N -0.506 5.506 25 C -0.132 4.132 26 C 0.056 3.944 27 O -0.390 6.390 28 H 0.052 0.948 29 H 0.030 0.970 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.418 0.582 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.101 0.899 39 H 0.270 0.730 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.009 0.991 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.031 -4.080 11.967 14.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C 0.019 3.981 4 H 0.066 0.934 5 C -0.158 4.158 6 C -0.124 4.124 7 H 0.143 0.857 8 C 0.247 3.753 9 O -0.319 6.319 10 N -0.305 5.305 11 C 0.111 3.889 12 C -0.372 4.372 13 C -0.059 4.059 14 C -0.356 4.356 15 C 0.114 3.886 16 C -0.499 4.499 17 H 0.100 0.900 18 C -0.210 4.210 19 N -0.305 5.305 20 Si 0.790 3.210 21 H -0.193 1.193 22 H -0.197 1.197 23 H -0.181 1.181 24 N -0.226 5.226 25 C -0.170 4.170 26 C -0.021 4.021 27 O -0.310 6.310 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.256 0.744 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.119 0.881 39 H 0.081 0.919 40 H 0.126 0.874 41 H 0.112 0.888 42 H 0.028 0.972 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.208 -5.760 11.752 14.086 hybrid contribution 0.005 1.231 -0.981 1.574 sum 5.213 -4.529 10.771 12.795 Atomic orbital electron populations 1.21662 0.95895 1.01795 1.00880 1.21485 0.96322 0.93787 1.02889 1.22365 0.94598 0.94566 0.86561 0.93401 1.21916 0.95755 0.95015 1.03067 1.21496 1.03011 0.95255 0.92683 0.85699 1.21686 0.82779 0.82412 0.88419 1.91079 1.31655 1.67135 1.42003 1.43460 1.44705 1.10804 1.31490 1.19157 0.91765 0.88476 0.89462 1.20981 1.15525 0.92978 1.07752 1.21024 0.93247 0.99026 0.92610 1.21792 1.11536 0.95954 1.06305 1.18834 0.90358 0.89353 0.90037 1.19832 1.25316 0.96306 1.08463 0.89957 1.26912 0.97210 0.98727 0.98114 1.70416 1.27840 1.10371 1.21907 0.85426 0.78761 0.78118 0.78663 1.19261 1.19719 1.18061 1.68614 1.12069 1.36496 1.05404 1.22134 0.95547 1.02819 0.96473 1.22609 0.95223 0.82834 1.01389 1.87802 1.79549 1.24740 1.38892 0.92911 0.95100 0.91026 0.90626 0.89885 0.91732 0.88196 0.74421 0.85114 0.84758 0.88077 0.91938 0.87363 0.88838 0.97238 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.11 9.81 71.98 0.71 -3.41 16 2 C -0.11 -2.96 5.64 30.59 0.17 -2.79 16 3 C 0.08 2.49 2.35 30.63 0.07 2.57 16 4 H 0.05 2.09 5.80 -2.39 -0.01 2.08 16 5 C -0.12 -3.25 4.56 30.69 0.14 -3.11 16 6 C -0.10 -2.67 3.04 -11.42 -0.03 -2.71 16 7 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 8 C 0.46 17.75 5.78 87.65 0.51 18.26 16 9 O -0.45 -22.26 9.72 -2.99 -0.03 -22.29 16 10 N -0.66 -24.40 5.22 -308.38 -1.61 -26.01 16 11 C 0.35 16.79 7.43 133.25 0.99 17.78 16 12 C -0.35 -14.77 9.95 22.72 0.23 -14.54 16 13 C -0.03 -1.53 10.15 22.40 0.23 -1.30 16 14 C -0.33 -17.06 9.83 22.87 0.22 -16.84 16 15 C 0.24 13.94 6.53 40.19 0.26 14.21 16 16 C -0.47 -26.97 9.13 23.47 0.21 -26.75 16 17 H 0.08 4.48 7.85 -2.91 -0.02 4.46 16 18 C 0.02 0.89 5.48 85.29 0.47 1.36 16 19 N -0.69 -39.22 9.17 21.84 0.20 -39.02 16 20 Si 0.97 41.26 29.56 68.60 2.03 43.29 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 24 N -0.51 -28.90 5.77 -186.37 -1.08 -29.98 16 25 C -0.13 -2.79 5.57 30.68 0.17 -2.62 16 26 C 0.06 1.59 6.62 72.01 0.48 2.07 16 27 O -0.39 -12.37 9.94 -148.98 -1.48 -13.85 16 28 H 0.05 1.53 7.82 -2.39 -0.02 1.51 16 29 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.06 1.94 8.03 -2.39 -0.02 1.92 16 34 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.42 11.28 8.30 -92.71 -0.77 10.51 16 36 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 37 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 38 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 39 H 0.27 14.60 8.29 -92.71 -0.77 13.84 16 40 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.09 1.63 7.65 -2.39 -0.02 1.62 16 42 H 0.01 0.35 7.38 -2.39 -0.02 0.33 16 43 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -73.97 343.02 3.10 -70.87 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: 0.25 Total: 34.83 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 4.82 Total: -17.83 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -2.48 Total: -95.01 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -1.51 Total: -36.14 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -73.97 3.10 -70.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.182 kcal (2) G-P(sol) polarization free energy of solvation -73.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds