Wall clock time and date at job start Tue Mar 31 2020 09:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46875 * 2 1 4 4 H 1.08997 * 109.49243 * 55.03075 * 3 2 1 5 5 C 1.53093 * 109.47871 * 175.05574 * 3 2 1 6 6 C 1.53172 * 109.16339 * 177.59332 * 5 3 2 7 7 H 1.08997 * 109.54502 * 62.88573 * 6 5 3 8 8 C 1.50702 * 109.54194 * 183.15516 * 6 5 3 9 9 O 1.21268 * 120.00306 * 17.51036 * 8 6 5 10 10 N 1.34787 * 119.99856 * 197.50812 * 8 6 5 11 11 C 1.37210 * 119.99787 * 4.14702 * 10 8 6 12 12 H 1.08002 * 120.00102 * 46.61411 * 11 10 8 13 13 C 1.38895 * 119.99937 * 226.61591 * 11 10 8 14 14 N 1.31414 * 119.99954 * 206.06802 * 13 11 10 15 15 Si 1.86795 * 120.00088 * 26.06221 * 13 11 10 16 16 H 1.48498 * 109.47245 * 93.49892 * 15 13 11 17 17 H 1.48504 * 109.47156 * 213.50291 * 15 13 11 18 18 H 1.48504 * 109.47070 * 333.49804 * 15 13 11 19 19 C 1.39419 * 120.00026 * 184.14402 * 10 8 6 20 20 C 1.39060 * 119.69962 * 213.64478 * 19 10 8 21 21 C 1.38384 * 119.10193 * 179.73390 * 20 19 10 22 22 C 1.38831 * 118.48808 * 0.53309 * 21 20 19 23 23 C 1.38141 * 119.31210 * 359.72440 * 22 21 20 24 24 N 1.31881 * 120.85381 * 0.02562 * 23 22 21 25 25 C 1.53182 * 109.03574 * 303.01741 * 6 5 3 26 26 C 1.53098 * 109.16218 * 56.98293 * 25 6 5 27 27 O 1.42903 * 109.48092 * 294.99679 * 3 2 1 28 28 H 1.08997 * 109.47405 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47422 * 300.00377 * 1 2 3 30 30 H 1.09006 * 109.47390 * 60.00115 * 1 2 3 31 31 H 1.08995 * 109.47112 * 240.00126 * 2 1 3 32 32 H 1.08993 * 109.46826 * 119.99693 * 2 1 3 33 33 H 1.09002 * 109.52390 * 297.50352 * 5 3 2 34 34 H 1.09006 * 109.52240 * 57.68557 * 5 3 2 35 35 H 0.96993 * 119.99942 * 179.97438 * 14 13 11 36 36 H 1.07997 * 120.45018 * 359.97438 * 20 19 10 37 37 H 1.07994 * 120.75598 * 180.25638 * 21 20 19 38 38 H 1.08001 * 120.34386 * 179.71141 * 22 21 20 39 39 H 1.08004 * 119.57643 * 180.02562 * 23 22 21 40 40 H 1.08999 * 109.52058 * 176.88646 * 25 6 5 41 41 H 1.08999 * 109.52270 * 297.07817 * 25 6 5 42 42 H 1.08994 * 109.47944 * 182.41190 * 26 25 6 43 43 H 1.09001 * 109.47625 * 62.37217 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6059 1.9818 0.8420 5 6 3.5658 1.4446 0.1244 6 6 4.0733 2.8885 0.0632 7 1 3.6799 3.4496 0.9108 8 6 5.5797 2.8957 0.1070 9 8 6.1982 1.8818 -0.1380 10 7 6.2394 4.0290 0.4184 11 6 5.5399 5.1532 0.7784 12 1 4.7369 5.0825 1.4972 13 6 5.8644 6.3821 0.2183 14 7 5.6031 7.4917 0.8721 15 14 6.6726 6.4576 -1.4641 16 1 5.6289 6.6210 -2.5077 17 1 7.6067 7.6110 -1.5132 18 1 7.4248 5.2007 -1.7088 19 6 7.6326 4.0590 0.3748 20 6 8.3335 4.8474 1.2809 21 6 9.7163 4.8636 1.2302 22 6 10.3525 4.0963 0.2638 23 6 9.5927 3.3407 -0.6080 24 7 8.2761 3.3411 -0.5326 25 6 3.5957 3.5311 -1.2428 26 6 2.0686 3.4484 -1.3144 27 8 1.6620 2.0816 -1.2210 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.8543 0.9971 1.0755 34 1 3.9989 0.8712 -0.6953 35 1 5.8300 8.3498 0.4812 36 1 7.8059 5.4361 2.0168 37 1 10.2874 5.4631 1.9236 38 1 11.4302 4.0904 0.1943 39 1 10.0832 2.7418 -1.3612 40 1 3.9056 4.5757 -1.2694 41 1 4.0293 2.9998 -2.0900 42 1 1.7260 3.8657 -2.2612 43 1 1.6350 4.0139 -0.4895 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892472290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:46 Heat of formation + Delta-G solvation = -41.475357 kcal Electronic energy + Delta-G solvation = -26000.108375 eV Core-core repulsion = 22431.501856 eV Total energy + Delta-G solvation = -3568.606519 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.28227 -39.26580 -37.86122 -35.14410 -33.85591 -33.15261 -32.33802 -31.57342 -29.60370 -29.44269 -25.83227 -25.15436 -23.58824 -22.76928 -22.47814 -21.30528 -20.22206 -19.03091 -18.04792 -16.57015 -16.19006 -15.96128 -15.60839 -15.48555 -15.05807 -14.39545 -14.34009 -13.90458 -13.85942 -13.63218 -13.43344 -13.18911 -13.03544 -12.90285 -12.42242 -12.38469 -12.22791 -11.63051 -11.49080 -11.35906 -11.12754 -11.07258 -10.94227 -10.80252 -10.68223 -10.22957 -10.16922 -9.92809 -9.62781 -9.36059 -9.04768 -8.92926 -8.84609 -8.35984 -7.45523 -6.75248 -4.42267 1.82879 2.04004 3.03057 3.15593 3.33213 3.56830 3.92129 4.02811 4.10543 4.48495 4.85907 4.90227 5.10583 5.18113 5.26113 5.28559 5.42110 5.43897 5.46324 5.56095 5.63620 5.73886 5.75133 5.84420 5.94180 5.96347 5.98801 5.99758 6.11341 6.19270 6.24813 6.28934 6.33315 6.47303 6.50460 6.65083 6.71999 6.75127 6.87834 7.09833 7.47405 7.52187 7.87392 8.05712 8.59031 8.82490 9.09903 9.50556 10.32503 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.018316 B = 0.005148 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.339309 B = 5437.830808 C = 6282.106724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.092 3.908 4 H 0.056 0.944 5 C -0.132 4.132 6 C -0.086 4.086 7 H 0.096 0.904 8 C 0.504 3.496 9 O -0.538 6.538 10 N -0.409 5.409 11 C -0.365 4.365 12 H 0.110 0.890 13 C 0.094 3.906 14 N -0.836 5.836 15 Si 0.833 3.167 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.234 1.234 19 C 0.372 3.628 20 C -0.182 4.182 21 C -0.069 4.069 22 C -0.229 4.229 23 C 0.116 3.884 24 N -0.492 5.492 25 C -0.139 4.139 26 C 0.067 3.933 27 O -0.382 6.382 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.279 0.721 36 H 0.144 0.856 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.144 0.856 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.002 -5.729 -0.417 6.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.034 3.966 4 H 0.074 0.926 5 C -0.170 4.170 6 C -0.107 4.107 7 H 0.114 0.886 8 C 0.294 3.706 9 O -0.415 6.415 10 N -0.124 5.124 11 C -0.490 4.490 12 H 0.127 0.873 13 C -0.118 4.118 14 N -0.467 5.467 15 Si 0.656 3.344 16 H -0.195 1.195 17 H -0.206 1.206 18 H -0.157 1.157 19 C 0.144 3.856 20 C -0.205 4.205 21 C -0.095 4.095 22 C -0.251 4.251 23 C -0.044 4.044 24 N -0.206 5.206 25 C -0.177 4.177 26 C -0.010 4.010 27 O -0.302 6.302 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.162 0.838 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.161 0.839 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.396 -6.646 -1.230 7.564 hybrid contribution 1.191 1.307 -0.034 1.768 sum -2.205 -5.339 -1.264 5.913 Atomic orbital electron populations 1.21715 0.95557 1.01101 1.02186 1.21529 0.96279 0.94778 1.02687 1.22130 0.93705 0.93607 0.87116 0.92573 1.22088 0.94996 0.96457 1.03474 1.21035 0.92713 0.96731 1.00268 0.88554 1.20865 0.89758 0.83573 0.76451 1.90606 1.69565 1.33225 1.48103 1.41519 1.00533 1.11725 1.58667 1.18872 1.19283 0.83497 1.27395 0.87291 1.25321 0.94632 0.94886 0.96964 1.69813 1.42514 0.98538 1.35816 0.87367 0.80870 0.80530 0.85636 1.19482 1.20616 1.15705 1.18850 0.86256 0.91060 0.89440 1.21794 0.94040 1.03619 1.01037 1.21303 0.94070 0.96916 0.97208 1.21790 1.00395 1.02599 1.00276 1.22356 0.88902 0.96036 0.97077 1.67418 1.09993 1.21963 1.21263 1.22034 0.95998 1.03059 0.96620 1.22550 0.93931 0.82626 1.01872 1.87855 1.78587 1.25057 1.38660 0.93118 0.93044 0.91995 0.91164 0.90790 0.91174 0.90271 0.91054 0.83832 0.85659 0.86035 0.83875 0.89119 0.91474 0.89052 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.81 37.16 0.36 -1.21 16 2 C -0.12 -1.39 5.64 -26.73 -0.15 -1.54 16 3 C 0.09 1.32 2.64 -26.68 -0.07 1.25 16 4 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 5 C -0.13 -2.21 4.20 -26.59 -0.11 -2.32 16 6 C -0.09 -1.64 1.90 -91.59 -0.17 -1.81 16 7 H 0.10 1.80 6.88 -51.93 -0.36 1.44 16 8 C 0.50 11.65 6.72 -10.98 -0.07 11.57 16 9 O -0.54 -13.66 14.87 5.57 0.08 -13.58 16 10 N -0.41 -9.81 2.23 -60.71 -0.14 -9.95 16 11 C -0.36 -8.81 6.92 -14.90 -0.10 -8.92 16 12 H 0.11 2.70 7.16 -52.49 -0.38 2.32 16 13 C 0.09 2.33 4.67 -17.49 -0.08 2.24 16 14 N -0.84 -21.28 13.96 55.49 0.77 -20.50 16 15 Si 0.83 19.70 27.19 -169.99 -4.62 15.08 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.23 -5.84 5.10 56.52 0.29 -5.55 16 19 C 0.37 8.85 3.96 -154.64 -0.61 8.24 16 20 C -0.18 -3.92 8.52 -39.22 -0.33 -4.26 16 21 C -0.07 -1.24 10.17 -39.31 -0.40 -1.64 16 22 C -0.23 -3.91 10.11 -39.40 -0.40 -4.31 16 23 C 0.12 2.24 11.18 -17.57 -0.20 2.05 16 24 N -0.49 -11.63 7.82 -12.34 -0.10 -11.73 16 25 C -0.14 -2.51 5.32 -26.59 -0.14 -2.65 16 26 C 0.07 1.01 6.84 37.21 0.25 1.26 16 27 O -0.38 -5.94 9.94 -35.23 -0.35 -6.29 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.71 7.82 -51.93 -0.41 0.30 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.45 7.82 -51.93 -0.41 1.04 16 35 H 0.28 6.73 8.31 -40.82 -0.34 6.40 16 36 H 0.14 3.18 7.40 -52.49 -0.39 2.79 16 37 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 38 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.14 2.30 8.06 -52.48 -0.42 1.88 16 40 H 0.09 1.78 7.33 -51.93 -0.38 1.40 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 344.07 15.07 5.19 5.19 Total: -1.00 -29.36 344.07 -8.03 -37.38 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -6.64 Total: 6.45 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -2.23 Total: -2.05 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.54 Total: -42.18 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.27 Total: -19.87 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.62 Total: 15.08 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.36 -8.03 -37.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.091 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds