Wall clock time and date at job start Tue Mar 31 2020 09:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46875 * 2 1 4 4 H 1.08997 * 109.49243 * 55.03075 * 3 2 1 5 5 C 1.53093 * 109.47871 * 175.05574 * 3 2 1 6 6 C 1.53172 * 109.16339 * 177.59332 * 5 3 2 7 7 H 1.08997 * 109.54502 * 62.88573 * 6 5 3 8 8 C 1.50702 * 109.54194 * 183.15516 * 6 5 3 9 9 O 1.21268 * 120.00306 * 17.51036 * 8 6 5 10 10 N 1.34787 * 119.99856 * 197.50812 * 8 6 5 11 11 C 1.37210 * 119.99787 * 4.14702 * 10 8 6 12 12 H 1.08002 * 120.00102 * 46.61411 * 11 10 8 13 13 C 1.38895 * 119.99937 * 226.61591 * 11 10 8 14 14 N 1.31414 * 119.99954 * 206.06802 * 13 11 10 15 15 Si 1.86795 * 120.00088 * 26.06221 * 13 11 10 16 16 H 1.48498 * 109.47245 * 93.49892 * 15 13 11 17 17 H 1.48504 * 109.47156 * 213.50291 * 15 13 11 18 18 H 1.48504 * 109.47070 * 333.49804 * 15 13 11 19 19 C 1.39419 * 120.00026 * 184.14402 * 10 8 6 20 20 C 1.39060 * 119.69962 * 213.64478 * 19 10 8 21 21 C 1.38384 * 119.10193 * 179.73390 * 20 19 10 22 22 C 1.38831 * 118.48808 * 0.53309 * 21 20 19 23 23 C 1.38141 * 119.31210 * 359.72440 * 22 21 20 24 24 N 1.31881 * 120.85381 * 0.02562 * 23 22 21 25 25 C 1.53182 * 109.03574 * 303.01741 * 6 5 3 26 26 C 1.53098 * 109.16218 * 56.98293 * 25 6 5 27 27 O 1.42903 * 109.48092 * 294.99679 * 3 2 1 28 28 H 1.08997 * 109.47405 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47422 * 300.00377 * 1 2 3 30 30 H 1.09006 * 109.47390 * 60.00115 * 1 2 3 31 31 H 1.08995 * 109.47112 * 240.00126 * 2 1 3 32 32 H 1.08993 * 109.46826 * 119.99693 * 2 1 3 33 33 H 1.09002 * 109.52390 * 297.50352 * 5 3 2 34 34 H 1.09006 * 109.52240 * 57.68557 * 5 3 2 35 35 H 0.96993 * 119.99942 * 179.97438 * 14 13 11 36 36 H 1.07997 * 120.45018 * 359.97438 * 20 19 10 37 37 H 1.07994 * 120.75598 * 180.25638 * 21 20 19 38 38 H 1.08001 * 120.34386 * 179.71141 * 22 21 20 39 39 H 1.08004 * 119.57643 * 180.02562 * 23 22 21 40 40 H 1.08999 * 109.52058 * 176.88646 * 25 6 5 41 41 H 1.08999 * 109.52270 * 297.07817 * 25 6 5 42 42 H 1.08994 * 109.47944 * 182.41190 * 26 25 6 43 43 H 1.09001 * 109.47625 * 62.37217 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6059 1.9818 0.8420 5 6 3.5658 1.4446 0.1244 6 6 4.0733 2.8885 0.0632 7 1 3.6799 3.4496 0.9108 8 6 5.5797 2.8957 0.1070 9 8 6.1982 1.8818 -0.1380 10 7 6.2394 4.0290 0.4184 11 6 5.5399 5.1532 0.7784 12 1 4.7369 5.0825 1.4972 13 6 5.8644 6.3821 0.2183 14 7 5.6031 7.4917 0.8721 15 14 6.6726 6.4576 -1.4641 16 1 5.6289 6.6210 -2.5077 17 1 7.6067 7.6110 -1.5132 18 1 7.4248 5.2007 -1.7088 19 6 7.6326 4.0590 0.3748 20 6 8.3335 4.8474 1.2809 21 6 9.7163 4.8636 1.2302 22 6 10.3525 4.0963 0.2638 23 6 9.5927 3.3407 -0.6080 24 7 8.2761 3.3411 -0.5326 25 6 3.5957 3.5311 -1.2428 26 6 2.0686 3.4484 -1.3144 27 8 1.6620 2.0816 -1.2210 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.8543 0.9971 1.0755 34 1 3.9989 0.8712 -0.6953 35 1 5.8300 8.3498 0.4812 36 1 7.8059 5.4361 2.0168 37 1 10.2874 5.4631 1.9236 38 1 11.4302 4.0904 0.1943 39 1 10.0832 2.7418 -1.3612 40 1 3.9056 4.5757 -1.2694 41 1 4.0293 2.9998 -2.0900 42 1 1.7260 3.8657 -2.2612 43 1 1.6350 4.0139 -0.4895 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892472290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:45 Heat of formation + Delta-G solvation = -58.031404 kcal Electronic energy + Delta-G solvation = -26000.826299 eV Core-core repulsion = 22431.501856 eV Total energy + Delta-G solvation = -3569.324443 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.93147 -40.67355 -39.40827 -36.95363 -34.94265 -34.58047 -34.20074 -33.17316 -31.09440 -30.70898 -27.37210 -26.83768 -24.86833 -24.25024 -24.01481 -22.51990 -21.56338 -20.80465 -19.69245 -18.22153 -17.75510 -17.36300 -17.20286 -16.89745 -16.58357 -16.10537 -15.67845 -15.45508 -15.40861 -15.01362 -14.86785 -14.58694 -14.52844 -14.21986 -14.12212 -13.84848 -13.71345 -13.12419 -13.01804 -12.70273 -12.68769 -12.61428 -12.24290 -12.09336 -12.03283 -11.74600 -11.57765 -11.42825 -11.24916 -10.84580 -10.66660 -10.64823 -10.42763 -10.01254 -9.16795 -8.68414 -6.33806 0.25557 0.50491 1.12412 1.22518 1.41652 1.80726 2.12440 2.33539 2.71503 2.86405 3.16284 3.58313 3.74968 3.84665 3.92009 4.01158 4.08566 4.21263 4.23586 4.31897 4.39885 4.43046 4.45070 4.48764 4.57874 4.61078 4.74920 4.81347 4.88599 4.94626 4.96432 5.12536 5.15141 5.16108 5.18447 5.23165 5.33504 5.37163 5.44314 5.50322 5.84097 5.97794 6.25108 6.31567 6.78683 7.06540 7.31922 7.73040 8.43081 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.018316 B = 0.005148 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.339309 B = 5437.830808 C = 6282.106724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C 0.094 3.906 4 H 0.069 0.931 5 C -0.123 4.123 6 C -0.083 4.083 7 H 0.098 0.902 8 C 0.493 3.507 9 O -0.570 6.570 10 N -0.420 5.420 11 C -0.353 4.353 12 H 0.097 0.903 13 C 0.079 3.921 14 N -0.861 5.861 15 Si 0.869 3.131 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.252 1.252 19 C 0.340 3.660 20 C -0.201 4.201 21 C -0.063 4.063 22 C -0.204 4.204 23 C 0.098 3.902 24 N -0.530 5.530 25 C -0.134 4.134 26 C 0.072 3.928 27 O -0.387 6.387 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.283 0.717 36 H 0.129 0.871 37 H 0.166 0.834 38 H 0.172 0.828 39 H 0.173 0.827 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.112 0.888 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.329 -5.977 -0.297 6.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C 0.036 3.964 4 H 0.087 0.913 5 C -0.162 4.162 6 C -0.104 4.104 7 H 0.116 0.884 8 C 0.284 3.716 9 O -0.450 6.450 10 N -0.136 5.136 11 C -0.479 4.479 12 H 0.115 0.885 13 C -0.131 4.131 14 N -0.494 5.494 15 Si 0.693 3.307 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.175 1.175 19 C 0.113 3.887 20 C -0.224 4.224 21 C -0.089 4.089 22 C -0.225 4.225 23 C -0.061 4.061 24 N -0.245 5.245 25 C -0.172 4.172 26 C -0.004 4.004 27 O -0.307 6.307 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.147 0.853 37 H 0.184 0.816 38 H 0.190 0.810 39 H 0.190 0.810 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.130 0.870 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.713 -6.881 -1.112 7.480 hybrid contribution 1.189 1.323 -0.051 1.779 sum -1.524 -5.558 -1.163 5.880 Atomic orbital electron populations 1.21679 0.94150 1.02203 1.02079 1.21557 0.97447 0.93037 1.03086 1.22248 0.91704 0.95277 0.87166 0.91330 1.22039 0.96893 0.94462 1.02781 1.21081 0.90089 0.98478 1.00772 0.88379 1.21548 0.91350 0.82993 0.75699 1.90560 1.70590 1.34043 1.49773 1.41638 1.01242 1.11658 1.59071 1.18695 1.18983 0.83700 1.26512 0.88521 1.25489 0.94962 0.94767 0.97854 1.69828 1.44112 0.98895 1.36593 0.86848 0.80205 0.79306 0.84375 1.19362 1.20588 1.17526 1.19061 0.86223 0.92650 0.90745 1.21842 0.95837 1.03825 1.00883 1.21816 0.92740 0.96637 0.97706 1.22310 1.02701 0.99711 0.97803 1.23044 0.87928 0.96740 0.98362 1.67358 1.12262 1.22808 1.22075 1.21984 0.98436 1.01348 0.95442 1.22578 0.91372 0.82893 1.03568 1.87865 1.78266 1.25183 1.39357 0.91466 0.92289 0.92930 0.91842 0.89396 0.90906 0.92263 0.90657 0.85317 0.81647 0.81028 0.80958 0.91012 0.92993 0.87008 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.81 71.98 0.71 -2.04 16 2 C -0.11 -2.57 5.64 30.59 0.17 -2.40 16 3 C 0.09 2.58 2.64 30.63 0.08 2.67 16 4 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 5 C -0.12 -4.18 4.20 30.68 0.13 -4.05 16 6 C -0.08 -3.24 1.90 -11.42 -0.02 -3.26 16 7 H 0.10 3.75 6.88 -2.39 -0.02 3.74 16 8 C 0.49 23.64 6.72 87.66 0.59 24.23 16 9 O -0.57 -30.07 14.87 -2.99 -0.04 -30.12 16 10 N -0.42 -20.77 2.23 -464.37 -1.03 -21.81 16 11 C -0.35 -17.53 6.92 84.01 0.58 -16.95 16 12 H 0.10 4.96 7.16 -2.91 -0.02 4.94 16 13 C 0.08 3.97 4.67 84.91 0.40 4.37 16 14 N -0.86 -44.26 13.96 21.65 0.30 -43.96 16 15 Si 0.87 41.11 27.19 68.60 1.87 42.98 16 16 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.25 -12.69 5.10 99.48 0.51 -12.18 16 19 C 0.34 16.40 3.96 132.90 0.53 16.92 16 20 C -0.20 -8.61 8.52 22.50 0.19 -8.42 16 21 C -0.06 -2.10 10.17 22.45 0.23 -1.87 16 22 C -0.20 -6.21 10.11 22.39 0.23 -5.98 16 23 C 0.10 3.60 11.18 84.66 0.95 4.55 16 24 N -0.53 -25.14 7.82 -192.96 -1.51 -26.64 16 25 C -0.13 -4.93 5.32 30.69 0.16 -4.77 16 26 C 0.07 2.12 6.84 72.01 0.49 2.61 16 27 O -0.39 -11.60 9.94 -148.98 -1.48 -13.08 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.05 1.10 7.82 -2.38 -0.02 1.09 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.06 2.23 7.82 -2.38 -0.02 2.21 16 35 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 36 H 0.13 5.80 7.40 -2.91 -0.02 5.78 16 37 H 0.17 4.10 8.06 -2.91 -0.02 4.08 16 38 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 39 H 0.17 5.09 8.06 -2.91 -0.02 5.07 16 40 H 0.07 2.90 7.33 -2.39 -0.02 2.88 16 41 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -65.48 344.07 4.30 -61.18 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.79 Total: 25.86 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 5.41 Total: 5.59 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -2.24 Total: -92.41 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -1.53 Total: -43.20 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 1.87 Total: 42.98 kcal Total: -65.48 4.30 -61.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.152 kcal (2) G-P(sol) polarization free energy of solvation -65.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds