Wall clock time and date at job start Tue Mar 31 2020 09:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46851 * 2 1 4 4 C 1.52994 * 109.47140 * 120.00041 * 2 1 3 5 5 N 1.46908 * 109.47183 * 177.05504 * 4 2 1 6 6 C 1.46898 * 110.99921 * 287.97336 * 5 4 2 7 7 C 1.50694 * 109.47467 * 160.40845 * 6 5 4 8 8 H 1.08003 * 119.99941 * 4.72653 * 7 6 5 9 9 C 1.37878 * 120.00587 * 184.72816 * 7 6 5 10 10 N 1.31517 * 119.99702 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00269 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47061 * 60.00034 * 11 9 7 13 13 H 1.48502 * 109.47407 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47462 * 300.00069 * 11 9 7 15 15 C 1.46899 * 111.00075 * 164.02126 * 5 4 2 16 16 N 1.46496 * 109.46876 * 278.95279 * 15 5 4 17 17 C 1.39462 * 126.25764 * 90.00207 * 16 15 5 18 18 C 1.38618 * 133.36019 * 0.02562 * 17 16 15 19 19 C 1.38128 * 119.82507 * 179.97438 * 18 17 16 20 20 C 1.38407 * 120.18541 * 0.02562 * 19 18 17 21 21 C 1.38127 * 120.31354 * 359.97438 * 20 19 18 22 22 C 1.38609 * 119.91461 * 0.02562 * 21 20 19 23 23 O 1.35562 * 132.99631 * 180.02562 * 22 21 20 24 24 C 1.34228 * 109.17774 * 179.97438 * 23 22 21 25 25 O 1.21599 * 125.26868 * 179.97438 * 24 23 22 26 26 H 1.08994 * 109.46812 * 299.99852 * 1 2 3 27 27 H 1.09004 * 109.47057 * 59.99755 * 1 2 3 28 28 H 1.08998 * 109.46938 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47264 * 240.00347 * 2 1 3 30 30 H 1.08994 * 109.47392 * 299.99895 * 3 2 1 31 31 H 1.08998 * 109.46903 * 60.00126 * 3 2 1 32 32 H 1.09007 * 109.46632 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47156 * 57.05734 * 4 2 1 34 34 H 1.09003 * 109.47359 * 297.05026 * 4 2 1 35 35 H 1.09004 * 109.47517 * 280.41026 * 6 5 4 36 36 H 1.09009 * 109.47168 * 40.40871 * 6 5 4 37 37 H 0.96997 * 119.99774 * 180.02562 * 10 9 7 38 38 H 1.08994 * 109.47072 * 158.95368 * 15 5 4 39 39 H 1.09000 * 109.47314 * 38.94968 * 15 5 4 40 40 H 1.08003 * 120.08766 * 0.02562 * 18 17 16 41 41 H 1.07997 * 119.90811 * 180.02562 * 19 18 17 42 42 H 1.07997 * 119.84787 * 179.97438 * 20 19 18 43 43 H 1.07997 * 120.04020 * 179.72574 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5074 -0.7832 1.2141 6 6 3.9698 -1.7395 0.1995 7 6 5.4052 -1.4443 -0.1519 8 1 5.9457 -0.6781 0.3840 9 6 6.0285 -2.1523 -1.1575 10 7 5.3701 -3.0850 -1.8105 11 14 7.8075 -1.7858 -1.5935 12 1 8.6665 -2.0192 -0.4049 13 1 8.2401 -2.6779 -2.6990 14 1 7.9304 -0.3695 -2.0226 15 6 4.0520 -1.1152 2.5374 16 7 4.0971 0.0934 3.3641 17 6 3.0839 0.5572 4.2028 18 6 1.8173 0.0884 4.5146 19 6 1.0264 0.7867 5.4061 20 6 1.4952 1.9521 5.9873 21 6 2.7563 2.4254 5.6814 22 6 3.5571 1.7314 4.7879 23 8 4.8062 1.9459 4.3067 24 6 5.1250 0.9605 3.4529 25 8 6.1781 0.8651 2.8525 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.1301 1.4426 0.0005 33 1 1.6343 -1.7325 1.2759 34 1 1.7205 -0.1778 2.1384 35 1 3.8933 -2.7529 0.5936 36 1 3.3512 -1.6493 -0.6935 37 1 5.8087 -3.5833 -2.5177 38 1 5.0592 -1.5166 2.4255 39 1 3.4154 -1.8593 3.0161 40 1 1.4500 -0.8211 4.0623 41 1 0.0395 0.4224 5.6503 42 1 0.8721 2.4940 6.6833 43 1 3.1159 3.3375 6.1341 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919944944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:23 Heat of formation + Delta-G solvation = -12.078930 kcal Electronic energy + Delta-G solvation = -25993.154635 eV Core-core repulsion = 22425.822841 eV Total energy + Delta-G solvation = -3567.331794 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.02879 -38.46369 -38.05364 -36.86452 -35.39610 -33.82223 -32.26569 -30.79643 -29.45571 -27.52457 -26.77764 -26.56138 -24.01186 -23.37576 -22.65005 -21.91745 -20.73118 -19.17561 -18.51630 -17.63153 -17.19220 -16.46939 -16.23580 -15.28073 -14.97884 -14.80575 -14.60265 -14.42676 -14.10896 -13.99324 -13.82095 -13.27717 -13.18969 -12.68580 -12.42021 -12.38067 -12.10611 -11.94122 -11.66176 -11.49075 -11.41879 -11.24560 -10.83346 -10.69940 -10.66711 -10.56814 -10.47963 -10.31055 -10.15557 -9.76090 -9.26537 -8.88335 -8.43501 -8.04192 -7.53062 -6.03597 -4.04561 0.99714 1.10978 2.33476 2.85243 3.05420 3.39677 3.41254 3.47927 3.49029 4.31776 4.43901 4.68049 4.76621 4.79583 5.03178 5.09055 5.22914 5.24523 5.32587 5.34651 5.48950 5.60944 5.69886 5.80199 5.85717 5.95218 5.97529 5.98765 6.14970 6.19315 6.20256 6.23027 6.36903 6.40495 6.48491 6.56716 6.78502 6.92800 7.01220 7.15441 7.42512 7.78951 7.88953 8.01263 8.09955 8.41952 9.06326 9.61156 11.06578 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.014620 B = 0.005344 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.720729 B = 5238.629319 C = 6468.160216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 C -0.132 4.132 4 C 0.055 3.945 5 N -0.544 5.544 6 C 0.199 3.801 7 C -0.510 4.510 8 H 0.069 0.931 9 C 0.059 3.941 10 N -0.900 5.900 11 Si 0.898 3.102 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.276 1.276 15 C 0.301 3.699 16 N -0.531 5.531 17 C 0.088 3.912 18 C -0.108 4.108 19 C -0.100 4.100 20 C -0.120 4.120 21 C -0.081 4.081 22 C 0.030 3.970 23 O -0.246 6.246 24 C 0.637 3.363 25 O -0.468 6.468 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.061 0.939 35 H -0.007 1.007 36 H 0.044 0.956 37 H 0.262 0.738 38 H 0.119 0.881 39 H 0.059 0.941 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.748 7.001 14.428 20.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.189 4.189 4 C -0.073 4.073 5 N -0.270 5.270 6 C 0.075 3.925 7 C -0.548 4.548 8 H 0.087 0.913 9 C -0.142 4.142 10 N -0.540 5.540 11 Si 0.725 3.275 12 H -0.201 1.201 13 H -0.215 1.215 14 H -0.201 1.201 15 C 0.091 3.909 16 N -0.263 5.263 17 C -0.012 4.012 18 C -0.129 4.129 19 C -0.119 4.119 20 C -0.139 4.139 21 C -0.100 4.100 22 C -0.017 4.017 23 O -0.153 6.153 24 C 0.391 3.609 25 O -0.348 6.348 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.010 0.990 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.137 0.863 39 H 0.077 0.923 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.691 7.365 13.742 19.487 hybrid contribution 0.654 -0.701 -0.307 1.007 sum -11.037 6.664 13.435 18.620 Atomic orbital electron populations 1.21808 0.96019 1.01095 1.01146 1.21082 0.93951 0.97163 0.98822 1.21640 1.02915 0.94879 0.99456 1.22290 0.88928 0.97962 0.98149 1.61764 1.06591 1.53877 1.04772 1.19776 0.96746 0.87266 0.88721 1.21208 0.95978 1.19551 1.18108 0.91304 1.24933 0.98327 0.95014 0.95953 1.69941 1.36978 1.23423 1.23655 0.86554 0.84765 0.78252 0.77879 1.20149 1.21498 1.20129 1.22020 1.03550 0.79741 0.85574 1.46420 1.13215 1.26149 1.40547 1.18696 0.92515 0.95091 0.94902 1.20139 0.90779 1.01652 1.00333 1.20936 0.99669 0.95090 0.96199 1.20837 0.94691 0.97119 1.01292 1.19976 0.92941 1.00179 0.96880 1.19037 0.84896 0.96576 1.01222 1.84995 1.29839 1.46402 1.54060 1.18562 0.84930 0.78032 0.79394 1.91209 1.23674 1.73693 1.46224 0.93273 0.92908 0.93126 0.90305 0.94033 0.94289 0.91009 0.95474 0.92029 0.98973 0.93790 0.92890 0.86302 0.92303 0.85059 0.84775 0.84569 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.19 37.16 0.34 -1.51 16 2 C -0.09 -1.50 2.92 -90.62 -0.26 -1.76 16 3 C -0.13 -2.20 9.06 37.16 0.34 -1.87 16 4 C 0.05 0.92 4.22 -3.82 -0.02 0.90 16 5 N -0.54 -11.04 3.84 -239.98 -0.92 -11.96 16 6 C 0.20 4.89 4.54 -4.98 -0.02 4.86 16 7 C -0.51 -14.23 8.51 -34.44 -0.29 -14.53 16 8 H 0.07 2.02 7.81 -52.48 -0.41 1.61 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.90 -26.31 13.29 55.43 0.74 -25.57 16 11 Si 0.90 22.47 29.54 -169.99 -5.02 17.44 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 15 C 0.30 5.56 5.61 -63.32 -0.36 5.20 16 16 N -0.53 -9.30 3.00 -122.31 -0.37 -9.67 16 17 C 0.09 1.26 6.18 -83.79 -0.52 0.74 16 18 C -0.11 -1.19 8.60 -39.48 -0.34 -1.53 16 19 C -0.10 -0.84 10.04 -39.56 -0.40 -1.24 16 20 C -0.12 -0.96 10.03 -39.56 -0.40 -1.36 16 21 C -0.08 -0.82 10.06 -39.48 -0.40 -1.22 16 22 C 0.03 0.42 7.35 -38.99 -0.29 0.13 16 23 O -0.25 -4.26 10.72 -21.99 -0.24 -4.49 16 24 C 0.64 12.61 9.07 54.05 0.49 13.10 16 25 O -0.47 -11.05 17.81 -19.01 -0.34 -11.39 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.50 6.46 -51.93 -0.34 1.17 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.44 7.69 -51.92 -0.40 1.04 16 33 H 0.03 0.44 8.05 -51.93 -0.42 0.02 16 34 H 0.06 0.92 4.83 -51.93 -0.25 0.67 16 35 H -0.01 -0.19 8.00 -51.93 -0.42 -0.61 16 36 H 0.04 1.15 6.22 -51.92 -0.32 0.83 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.12 2.50 7.17 -51.93 -0.37 2.13 16 39 H 0.06 0.93 7.92 -51.93 -0.41 0.51 16 40 H 0.13 1.33 7.44 -52.48 -0.39 0.94 16 41 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 355.15 15.07 5.35 5.35 Total: -1.00 -31.75 355.15 -9.25 -41.00 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -6.24 Total: -2.22 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -2.22 Total: 1.50 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.55 Total: -47.20 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.57 Total: -15.88 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.75 -9.25 -41.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919944944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.924 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds