Wall clock time and date at job start Tue Mar 31 2020 09:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34802 * 117.00055 * 2 1 4 4 O 1.21538 * 119.99762 * 359.97438 * 3 2 1 5 5 C 1.46949 * 120.00209 * 179.97438 * 3 2 1 6 6 C 1.33086 * 120.00304 * 184.86948 * 5 3 2 7 7 C 1.50699 * 119.99534 * 5.67911 * 6 5 3 8 8 C 1.50692 * 120.00117 * 185.68229 * 6 5 3 9 9 N 1.46906 * 109.47035 * 94.99768 * 8 6 5 10 10 C 1.46903 * 111.00024 * 288.66107 * 9 8 6 11 11 C 1.50702 * 109.47259 * 299.44580 * 10 9 8 12 12 H 1.08002 * 119.99623 * 4.31648 * 11 10 9 13 13 C 1.37868 * 120.00016 * 184.31691 * 11 10 9 14 14 N 1.31522 * 120.00025 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00245 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47191 * 89.99858 * 15 13 11 17 17 H 1.48500 * 109.47266 * 210.00304 * 15 13 11 18 18 H 1.48506 * 109.46861 * 329.99970 * 15 13 11 19 19 C 1.46905 * 110.99916 * 164.70891 * 9 8 6 20 20 C 1.50696 * 109.47128 * 190.00156 * 19 9 8 21 21 C 1.38226 * 119.62161 * 95.02032 * 20 19 9 22 22 C 1.38632 * 119.16485 * 179.74947 * 21 20 19 23 23 C 1.38678 * 118.41383 * 0.46897 * 22 21 20 24 24 C 1.38177 * 119.16700 * 359.51446 * 23 22 21 25 25 N 1.31859 * 119.61668 * 275.00431 * 20 19 9 26 26 H 1.09005 * 109.46974 * 300.00025 * 1 2 3 27 27 H 1.09006 * 109.47199 * 59.99989 * 1 2 3 28 28 H 1.09003 * 109.47410 * 180.02562 * 1 2 3 29 29 H 1.08006 * 119.99980 * 4.86342 * 5 3 2 30 30 H 1.09001 * 109.46946 * 174.72555 * 7 6 5 31 31 H 1.08999 * 109.47427 * 294.72517 * 7 6 5 32 32 H 1.09000 * 109.47101 * 54.73313 * 7 6 5 33 33 H 1.09005 * 109.47498 * 334.99856 * 8 6 5 34 34 H 1.08995 * 109.47496 * 214.99789 * 8 6 5 35 35 H 1.08997 * 109.46798 * 59.45014 * 10 9 8 36 36 H 1.09004 * 109.46760 * 179.44350 * 10 9 8 37 37 H 0.97004 * 119.99871 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.46700 * 70.00060 * 19 9 8 39 39 H 1.08997 * 109.47124 * 309.99852 * 19 9 8 40 40 H 1.07997 * 120.41600 * 359.95546 * 21 20 19 41 41 H 1.07991 * 120.78870 * 180.23575 * 22 21 20 42 42 H 1.07995 * 120.41249 * 179.77917 * 23 22 21 43 43 H 1.07995 * 119.61552 * 180.25205 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2011 0.0000 4 8 1.4020 2.2204 -0.0005 5 6 3.5314 1.2780 0.0006 6 6 4.1358 2.4597 0.0984 7 6 3.3214 3.7050 0.3370 8 6 5.6345 2.5524 -0.0295 9 7 5.9881 2.8798 -1.4172 10 6 5.7434 1.7365 -2.3067 11 6 6.5880 0.5684 -1.8673 12 1 7.1883 0.6424 -0.9726 13 6 6.5944 -0.5947 -2.6076 14 7 5.8637 -0.6846 -3.6974 15 14 7.6408 -2.0430 -2.0626 16 1 6.8472 -2.9152 -1.1600 17 1 8.0679 -2.8209 -3.2533 18 1 8.8392 -1.5441 -1.3414 19 6 7.3827 3.3318 -1.5125 20 6 7.6375 3.8880 -2.8896 21 6 7.5261 5.2483 -3.1084 22 6 7.7677 5.7504 -4.3778 23 6 8.1044 4.8602 -5.3865 24 6 8.1971 3.5132 -5.0927 25 7 7.9646 3.0715 -3.8720 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 4.1195 0.3756 -0.0783 30 1 3.9897 4.5540 0.4812 31 1 2.6795 3.8900 -0.5243 32 1 2.7062 3.5718 1.2269 33 1 6.0823 1.5969 0.2438 34 1 6.0083 3.3319 0.6343 35 1 4.6899 1.4605 -2.2619 36 1 6.0043 2.0094 -3.3292 37 1 5.8685 -1.5028 -4.2185 38 1 8.0506 2.4896 -1.3314 39 1 7.5651 4.1068 -0.7681 40 1 7.2574 5.9119 -2.2999 41 1 7.6919 6.8090 -4.5772 42 1 8.2959 5.2159 -6.3881 43 1 8.4627 2.8141 -5.8718 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929800749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:15 Heat of formation + Delta-G solvation = -20.029617 kcal Electronic energy + Delta-G solvation = -25129.519980 eV Core-core repulsion = 21561.843418 eV Total energy + Delta-G solvation = -3567.676561 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.99807 -39.71969 -37.44301 -36.15653 -33.94380 -32.44125 -31.93183 -30.97683 -28.59764 -27.18642 -26.79393 -26.41144 -24.23775 -23.00177 -22.38007 -21.32859 -19.96015 -18.24972 -17.23386 -16.58108 -16.21023 -15.97910 -15.70813 -15.59269 -15.06775 -14.93615 -14.64387 -13.97425 -13.81014 -13.33025 -13.22389 -13.05951 -12.84400 -12.53759 -12.31533 -12.19149 -11.93883 -11.69498 -11.32855 -11.23474 -11.07268 -10.92353 -10.80504 -10.69149 -10.47101 -10.27604 -9.98227 -9.69928 -9.60350 -9.35619 -8.75757 -8.70172 -8.53276 -8.27443 -7.24110 -5.90514 -3.96362 1.50711 1.66898 1.76759 3.16812 3.34164 3.41364 3.43157 3.44134 4.26267 4.50367 4.83761 5.08001 5.16519 5.24198 5.27386 5.32537 5.34091 5.36327 5.42404 5.47092 5.56777 5.59047 5.73590 5.89644 5.94472 6.04059 6.09770 6.14242 6.16555 6.40138 6.44198 6.48878 6.54823 6.67059 6.71153 6.93519 7.04971 7.14707 7.27085 7.65115 7.95766 8.04025 8.21513 8.23172 8.36505 8.66255 9.08914 9.67974 11.16133 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.010660 B = 0.005354 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.941420 B = 5228.052120 C = 6922.385152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.356 6.356 3 C 0.498 3.502 4 O -0.521 6.521 5 C -0.202 4.202 6 C 0.006 3.994 7 C -0.112 4.112 8 C 0.083 3.917 9 N -0.530 5.530 10 C 0.181 3.819 11 C -0.535 4.535 12 H 0.053 0.947 13 C 0.073 3.927 14 N -0.885 5.885 15 Si 0.882 3.118 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.106 3.894 20 C 0.155 3.845 21 C -0.165 4.165 22 C -0.086 4.086 23 C -0.189 4.189 24 C 0.100 3.900 25 N -0.442 5.442 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.146 0.854 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.028 0.972 36 H 0.050 0.950 37 H 0.259 0.741 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.549 9.167 4.326 10.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.273 6.273 3 C 0.347 3.653 4 O -0.413 6.413 5 C -0.222 4.222 6 C 0.004 3.996 7 C -0.168 4.168 8 C -0.045 4.045 9 N -0.255 5.255 10 C 0.056 3.944 11 C -0.574 4.574 12 H 0.071 0.929 13 C -0.130 4.130 14 N -0.524 5.524 15 Si 0.710 3.290 16 H -0.209 1.209 17 H -0.214 1.214 18 H -0.201 1.201 19 C -0.023 4.023 20 C 0.017 3.983 21 C -0.185 4.185 22 C -0.112 4.112 23 C -0.209 4.209 24 C -0.058 4.058 25 N -0.151 5.151 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.164 0.836 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.053 8.815 4.199 9.978 hybrid contribution 0.743 -0.778 -0.005 1.075 sum -1.310 8.038 4.194 9.160 Atomic orbital electron populations 1.23152 0.77282 1.03135 1.02049 1.86653 1.22590 1.33458 1.84575 1.21740 0.90327 0.80801 0.72419 1.90785 1.67665 1.35659 1.47169 1.21810 0.88998 1.00538 1.10897 1.22505 0.96228 0.93760 0.87069 1.21005 0.98623 0.94487 1.02684 1.21111 0.90122 1.01353 0.91879 1.62578 1.18652 1.38672 1.05577 1.19931 0.96572 0.85003 0.92886 1.21462 1.27248 0.98933 1.09792 0.92919 1.24811 0.95188 0.98261 0.94697 1.69945 1.39938 1.27041 1.15472 0.86774 0.80910 0.83201 0.78110 1.20866 1.21383 1.20145 1.20831 0.91989 0.99098 0.90351 1.21193 0.92540 0.89276 0.95322 1.21911 1.02208 0.96667 0.97756 1.21432 0.97061 0.99647 0.93070 1.22050 1.03672 0.95222 0.99935 1.22800 0.95258 0.93443 0.94316 1.67781 1.08807 1.38690 0.99807 0.92392 0.92165 0.88578 0.83631 0.92579 0.89811 0.91303 0.91618 0.91398 0.95387 0.93227 0.93131 0.91562 0.91385 0.85395 0.85696 0.85692 0.83420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.57 101.05 1.07 1.55 16 2 O -0.36 -6.20 10.58 -40.77 -0.43 -6.63 16 3 C 0.50 9.29 7.84 34.26 0.27 9.56 16 4 O -0.52 -9.97 12.98 -19.29 -0.25 -10.22 16 5 C -0.20 -3.83 8.47 -37.85 -0.32 -4.15 16 6 C 0.01 0.10 5.17 -101.14 -0.52 -0.42 16 7 C -0.11 -1.75 8.34 36.00 0.30 -1.45 16 8 C 0.08 1.47 4.92 -4.98 -0.02 1.44 16 9 N -0.53 -10.70 4.65 -238.96 -1.11 -11.81 16 10 C 0.18 4.52 4.62 -4.97 -0.02 4.49 16 11 C -0.54 -14.04 7.35 -34.44 -0.25 -14.30 16 12 H 0.05 1.36 5.94 -52.49 -0.31 1.05 16 13 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 14 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 15 Si 0.88 21.41 29.54 -169.99 -5.02 16.39 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.11 1.95 5.10 -4.98 -0.03 1.93 16 20 C 0.16 2.89 5.70 -82.59 -0.47 2.41 16 21 C -0.16 -2.51 9.72 -39.44 -0.38 -2.90 16 22 C -0.09 -1.16 10.18 -39.27 -0.40 -1.56 16 23 C -0.19 -2.65 10.11 -39.44 -0.40 -3.05 16 24 C 0.10 1.72 11.18 -17.55 -0.20 1.52 16 25 N -0.44 -9.15 8.76 -9.48 -0.08 -9.23 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.15 2.96 8.00 -52.48 -0.42 2.54 16 30 H 0.06 0.76 7.98 -51.93 -0.41 0.35 16 31 H 0.08 1.46 7.11 -51.93 -0.37 1.09 16 32 H 0.07 1.04 7.39 -51.93 -0.38 0.66 16 33 H 0.07 1.26 5.99 -51.93 -0.31 0.95 16 34 H 0.07 0.99 7.79 -51.93 -0.40 0.59 16 35 H 0.03 0.77 6.55 -51.93 -0.34 0.43 16 36 H 0.05 1.38 6.15 -51.93 -0.32 1.06 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 38 H 0.07 1.37 6.61 -51.93 -0.34 1.03 16 39 H 0.07 1.02 7.77 -51.93 -0.40 0.61 16 40 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.15 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 358.06 15.07 5.40 5.40 Total: -1.00 -31.89 358.06 -8.36 -40.25 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.11 Total: 4.02 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -1.48 Total: -2.99 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -0.46 Total: -46.21 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.68 Total: -16.85 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.89 -8.36 -40.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929800749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.222 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds