Wall clock time and date at job start Tue Mar 31 2020 09:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34802 * 117.00055 * 2 1 4 4 O 1.21538 * 119.99762 * 359.97438 * 3 2 1 5 5 C 1.46949 * 120.00209 * 179.97438 * 3 2 1 6 6 C 1.33086 * 120.00304 * 184.86948 * 5 3 2 7 7 C 1.50699 * 119.99534 * 5.67911 * 6 5 3 8 8 C 1.50692 * 120.00117 * 185.68229 * 6 5 3 9 9 N 1.46906 * 109.47035 * 94.99768 * 8 6 5 10 10 C 1.46903 * 111.00024 * 288.66107 * 9 8 6 11 11 C 1.50702 * 109.47259 * 299.44580 * 10 9 8 12 12 H 1.08002 * 119.99623 * 4.31648 * 11 10 9 13 13 C 1.37868 * 120.00016 * 184.31691 * 11 10 9 14 14 N 1.31522 * 120.00025 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00245 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47191 * 89.99858 * 15 13 11 17 17 H 1.48500 * 109.47266 * 210.00304 * 15 13 11 18 18 H 1.48506 * 109.46861 * 329.99970 * 15 13 11 19 19 C 1.46905 * 110.99916 * 164.70891 * 9 8 6 20 20 C 1.50696 * 109.47128 * 190.00156 * 19 9 8 21 21 C 1.38226 * 119.62161 * 95.02032 * 20 19 9 22 22 C 1.38632 * 119.16485 * 179.74947 * 21 20 19 23 23 C 1.38678 * 118.41383 * 0.46897 * 22 21 20 24 24 C 1.38177 * 119.16700 * 359.51446 * 23 22 21 25 25 N 1.31859 * 119.61668 * 275.00431 * 20 19 9 26 26 H 1.09005 * 109.46974 * 300.00025 * 1 2 3 27 27 H 1.09006 * 109.47199 * 59.99989 * 1 2 3 28 28 H 1.09003 * 109.47410 * 180.02562 * 1 2 3 29 29 H 1.08006 * 119.99980 * 4.86342 * 5 3 2 30 30 H 1.09001 * 109.46946 * 174.72555 * 7 6 5 31 31 H 1.08999 * 109.47427 * 294.72517 * 7 6 5 32 32 H 1.09000 * 109.47101 * 54.73313 * 7 6 5 33 33 H 1.09005 * 109.47498 * 334.99856 * 8 6 5 34 34 H 1.08995 * 109.47496 * 214.99789 * 8 6 5 35 35 H 1.08997 * 109.46798 * 59.45014 * 10 9 8 36 36 H 1.09004 * 109.46760 * 179.44350 * 10 9 8 37 37 H 0.97004 * 119.99871 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.46700 * 70.00060 * 19 9 8 39 39 H 1.08997 * 109.47124 * 309.99852 * 19 9 8 40 40 H 1.07997 * 120.41600 * 359.95546 * 21 20 19 41 41 H 1.07991 * 120.78870 * 180.23575 * 22 21 20 42 42 H 1.07995 * 120.41249 * 179.77917 * 23 22 21 43 43 H 1.07995 * 119.61552 * 180.25205 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2011 0.0000 4 8 1.4020 2.2204 -0.0005 5 6 3.5314 1.2780 0.0006 6 6 4.1358 2.4597 0.0984 7 6 3.3214 3.7050 0.3370 8 6 5.6345 2.5524 -0.0295 9 7 5.9881 2.8798 -1.4172 10 6 5.7434 1.7365 -2.3067 11 6 6.5880 0.5684 -1.8673 12 1 7.1883 0.6424 -0.9726 13 6 6.5944 -0.5947 -2.6076 14 7 5.8637 -0.6846 -3.6974 15 14 7.6408 -2.0430 -2.0626 16 1 6.8472 -2.9152 -1.1600 17 1 8.0679 -2.8209 -3.2533 18 1 8.8392 -1.5441 -1.3414 19 6 7.3827 3.3318 -1.5125 20 6 7.6375 3.8880 -2.8896 21 6 7.5261 5.2483 -3.1084 22 6 7.7677 5.7504 -4.3778 23 6 8.1044 4.8602 -5.3865 24 6 8.1971 3.5132 -5.0927 25 7 7.9646 3.0715 -3.8720 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 4.1195 0.3756 -0.0783 30 1 3.9897 4.5540 0.4812 31 1 2.6795 3.8900 -0.5243 32 1 2.7062 3.5718 1.2269 33 1 6.0823 1.5969 0.2438 34 1 6.0083 3.3319 0.6343 35 1 4.6899 1.4605 -2.2619 36 1 6.0043 2.0094 -3.3292 37 1 5.8685 -1.5028 -4.2185 38 1 8.0506 2.4896 -1.3314 39 1 7.5651 4.1068 -0.7681 40 1 7.2574 5.9119 -2.2999 41 1 7.6919 6.8090 -4.5772 42 1 8.2959 5.2159 -6.3881 43 1 8.4627 2.8141 -5.8718 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929800749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:14 Heat of formation + Delta-G solvation = -40.181284 kcal Electronic energy + Delta-G solvation = -25130.393822 eV Core-core repulsion = 21561.843418 eV Total energy + Delta-G solvation = -3568.550403 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.39727 -40.98552 -38.95768 -37.57547 -35.42439 -34.43278 -33.14898 -32.34149 -29.94964 -28.98610 -28.11747 -27.67599 -26.03100 -24.21317 -23.90519 -22.65890 -21.55581 -19.75638 -18.66160 -18.40663 -17.49385 -17.32300 -17.03301 -16.99209 -16.66814 -16.44288 -16.16772 -15.60709 -15.25265 -14.62777 -14.56940 -14.44609 -14.16588 -14.09534 -13.73988 -13.49216 -13.17011 -13.09791 -12.91500 -12.76449 -12.66722 -12.54866 -12.34037 -12.32368 -12.07405 -11.91430 -11.74527 -11.59637 -11.10926 -10.62043 -10.44920 -10.18225 -9.99500 -9.77696 -8.97207 -8.01930 -6.14570 0.13892 0.38363 0.60949 1.38264 1.39350 1.47540 1.85510 2.02084 2.44903 2.98089 3.27385 3.55663 3.75802 3.87745 3.96229 4.00927 4.15076 4.25605 4.31435 4.32970 4.37329 4.43585 4.54289 4.63035 4.66476 4.77683 4.83543 4.89355 4.94063 4.98275 5.09565 5.14619 5.30547 5.37119 5.41434 5.42353 5.51255 5.55196 5.65418 5.90289 6.00603 6.12902 6.30208 6.50803 6.80085 7.01342 7.41224 7.53026 9.02547 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.010660 B = 0.005354 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.941420 B = 5228.052120 C = 6922.385152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.373 6.373 3 C 0.498 3.502 4 O -0.530 6.530 5 C -0.224 4.224 6 C 0.015 3.985 7 C -0.103 4.103 8 C 0.082 3.918 9 N -0.527 5.527 10 C 0.204 3.796 11 C -0.524 4.524 12 H 0.055 0.945 13 C 0.019 3.981 14 N -0.924 5.924 15 Si 0.941 3.059 16 H -0.276 1.276 17 H -0.290 1.290 18 H -0.270 1.270 19 C 0.108 3.892 20 C 0.121 3.879 21 C -0.160 4.160 22 C -0.080 4.080 23 C -0.175 4.175 24 C 0.069 3.931 25 N -0.499 5.499 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.127 0.873 29 H 0.122 0.878 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.112 0.888 35 H -0.004 1.004 36 H 0.019 0.981 37 H 0.257 0.743 38 H 0.034 0.966 39 H 0.111 0.889 40 H 0.158 0.842 41 H 0.169 0.831 42 H 0.161 0.839 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.208 11.673 5.321 12.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.290 6.290 3 C 0.347 3.653 4 O -0.423 6.423 5 C -0.244 4.244 6 C 0.013 3.987 7 C -0.159 4.159 8 C -0.045 4.045 9 N -0.250 5.250 10 C 0.078 3.922 11 C -0.564 4.564 12 H 0.073 0.927 13 C -0.180 4.180 14 N -0.565 5.565 15 Si 0.767 3.233 16 H -0.202 1.202 17 H -0.216 1.216 18 H -0.194 1.194 19 C -0.020 4.020 20 C -0.017 4.017 21 C -0.180 4.180 22 C -0.106 4.106 23 C -0.195 4.195 24 C -0.088 4.088 25 N -0.209 5.209 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.146 0.854 29 H 0.140 0.860 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.130 0.870 35 H 0.014 0.986 36 H 0.037 0.963 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.129 0.871 40 H 0.176 0.824 41 H 0.187 0.813 42 H 0.178 0.822 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.706 11.323 5.216 12.583 hybrid contribution 0.626 -1.482 -0.338 1.644 sum -1.080 9.840 4.879 11.036 Atomic orbital electron populations 1.23517 0.74747 1.05470 1.02571 1.86626 1.25202 1.32870 1.84254 1.21630 0.90183 0.81134 0.72316 1.90763 1.67781 1.35841 1.47891 1.21760 0.89533 1.00402 1.12745 1.22744 0.96440 0.94185 0.85303 1.20957 0.98616 0.94152 1.02128 1.21231 0.90192 1.01969 0.91151 1.62444 1.20317 1.36117 1.06129 1.19406 0.94098 0.86221 0.92506 1.21699 1.26292 0.99189 1.09172 0.92714 1.25558 0.96506 1.00987 0.94914 1.70082 1.41905 1.27601 1.16878 0.85829 0.79572 0.80265 0.77594 1.20166 1.21624 1.19449 1.20929 0.89690 0.99160 0.92209 1.21317 0.94628 0.90853 0.94885 1.22213 1.00825 0.95384 0.99557 1.21957 0.95080 1.01635 0.91955 1.22399 1.01494 0.93736 1.01891 1.23007 0.96738 0.95451 0.93619 1.67609 1.10752 1.41004 1.01525 0.91117 0.92389 0.85446 0.86019 0.89744 0.91506 0.90517 0.93578 0.87029 0.98634 0.96333 0.93442 0.94734 0.87075 0.82414 0.81345 0.82160 0.83483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.57 113.37 1.20 1.94 16 2 O -0.37 -13.15 10.58 -57.14 -0.60 -13.75 16 3 C 0.50 18.92 7.84 70.10 0.55 19.47 16 4 O -0.53 -20.22 12.98 19.71 0.26 -19.97 16 5 C -0.22 -8.76 8.47 23.40 0.20 -8.56 16 6 C 0.01 0.51 5.17 -17.61 -0.09 0.42 16 7 C -0.10 -3.02 8.34 71.24 0.59 -2.43 16 8 C 0.08 2.81 4.92 85.55 0.42 3.23 16 9 N -0.53 -21.13 4.65 -909.93 -4.23 -25.36 16 10 C 0.20 10.59 4.62 85.56 0.40 10.99 16 11 C -0.52 -28.51 7.35 25.60 0.19 -28.32 16 12 H 0.05 2.90 5.94 -2.91 -0.02 2.88 16 13 C 0.02 1.09 5.46 84.65 0.46 1.55 16 14 N -0.92 -56.48 13.29 21.45 0.28 -56.20 16 15 Si 0.94 45.26 29.54 68.60 2.03 47.28 16 16 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 17 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 18 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 19 C 0.11 3.90 5.10 85.55 0.44 4.34 16 20 C 0.12 4.44 5.70 42.55 0.24 4.68 16 21 C -0.16 -4.40 9.72 22.36 0.22 -4.18 16 22 C -0.08 -1.87 10.18 22.47 0.23 -1.65 16 23 C -0.18 -4.52 10.11 22.36 0.23 -4.30 16 24 C 0.07 2.41 11.18 84.67 0.95 3.35 16 25 N -0.50 -21.24 8.76 -183.89 -1.61 -22.85 16 26 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.13 2.30 8.14 -2.39 -0.02 2.29 16 29 H 0.12 5.28 8.00 -2.91 -0.02 5.25 16 30 H 0.08 1.99 7.98 -2.39 -0.02 1.98 16 31 H 0.07 2.26 7.11 -2.39 -0.02 2.24 16 32 H 0.08 2.16 7.39 -2.39 -0.02 2.15 16 33 H 0.05 1.78 5.99 -2.38 -0.01 1.77 16 34 H 0.11 2.88 7.79 -2.39 -0.02 2.86 16 35 H 0.00 -0.25 6.55 -2.39 -0.02 -0.27 16 36 H 0.02 1.09 6.15 -2.38 -0.01 1.08 16 37 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.03 1.45 6.61 -2.39 -0.02 1.44 16 39 H 0.11 2.97 7.77 -2.39 -0.02 2.95 16 40 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 41 H 0.17 2.46 8.06 -2.92 -0.02 2.44 16 42 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 43 H 0.15 4.80 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -73.72 358.06 3.34 -70.38 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 1.01 Total: 19.92 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 6.21 Total: 0.54 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -5.56 Total: -104.41 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -0.35 Total: -33.72 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -73.72 3.34 -70.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929800749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.202 kcal (2) G-P(sol) polarization free energy of solvation -73.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds