Wall clock time and date at job start Tue Mar 31 2020 08:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47447 * 2 1 4 4 C 1.53001 * 109.46690 * 120.00278 * 2 1 3 5 5 N 1.46500 * 109.46761 * 174.99659 * 4 2 1 6 6 C 1.35458 * 119.47183 * 90.00059 * 5 4 2 7 7 C 1.35773 * 121.24687 * 180.02562 * 6 5 4 8 8 C 1.39446 * 120.13829 * 0.02562 * 7 6 5 9 9 C 1.39401 * 118.95804 * 359.97438 * 8 7 6 10 10 C 1.46971 * 120.59356 * 180.02562 * 9 8 7 11 11 O 1.21680 * 119.99841 * 312.33537 * 10 9 8 12 12 N 1.34772 * 119.99994 * 132.33376 * 10 9 8 13 13 C 1.36892 * 119.99995 * 7.40125 * 12 10 9 14 14 H 1.07995 * 119.99687 * 303.42973 * 13 12 10 15 15 C 1.39024 * 120.00157 * 123.43364 * 13 12 10 16 16 N 1.31389 * 119.99444 * 351.99188 * 15 13 12 17 17 Si 1.86796 * 120.00203 * 171.99240 * 15 13 12 18 18 H 1.48506 * 109.47086 * 179.97438 * 17 15 13 19 19 H 1.48502 * 109.47130 * 299.99988 * 17 15 13 20 20 H 1.48493 * 109.46964 * 59.99864 * 17 15 13 21 21 C 1.46501 * 120.00270 * 187.39761 * 12 10 9 22 22 C 1.52994 * 117.50286 * 182.58244 * 21 12 10 23 23 C 1.52993 * 117.50065 * 113.92115 * 21 12 10 24 24 C 1.34660 * 119.47342 * 270.30784 * 5 4 2 25 25 O 1.21884 * 120.10698 * 359.97438 * 24 5 4 26 26 H 1.08998 * 109.47101 * 300.00407 * 1 2 3 27 27 H 1.09003 * 109.46690 * 59.99631 * 1 2 3 28 28 H 1.08994 * 109.47052 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47045 * 240.00004 * 2 1 3 30 30 H 1.08995 * 109.46934 * 300.00197 * 3 2 1 31 31 H 1.09000 * 109.46569 * 59.99754 * 3 2 1 32 32 H 1.08996 * 109.47034 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47227 * 55.00081 * 4 2 1 34 34 H 1.08995 * 109.47231 * 294.99813 * 4 2 1 35 35 H 1.08010 * 119.37494 * 359.97438 * 6 5 4 36 36 H 1.08000 * 119.92755 * 180.02562 * 7 6 5 37 37 H 1.08005 * 120.52079 * 179.97438 * 8 7 6 38 38 H 0.97009 * 119.99247 * 175.03833 * 16 15 13 39 39 H 1.09011 * 115.54613 * 328.25681 * 21 12 10 40 40 H 1.09004 * 117.49861 * 0.02562 * 22 21 12 41 41 H 1.09006 * 117.49755 * 145.02033 * 22 21 12 42 42 H 1.08999 * 117.50134 * 214.98443 * 23 21 12 43 43 H 1.08998 * 117.49624 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1905 6 6 4.2611 0.1601 1.7216 7 6 5.6171 0.0998 1.6867 8 6 6.2544 -0.9910 1.0963 9 6 5.4780 -2.0105 0.5476 10 6 6.1121 -3.1768 -0.0829 11 8 7.0137 -3.0198 -0.8849 12 7 5.6951 -4.4203 0.2272 13 6 4.5856 -4.5949 1.0098 14 1 4.5399 -4.1440 1.9901 15 6 3.5177 -5.3526 0.5427 16 7 3.5031 -5.7691 -0.7034 17 14 2.1037 -5.7786 1.6865 18 1 1.0987 -6.5878 0.9512 19 1 2.6185 -6.5578 2.8412 20 1 1.4695 -4.5285 2.1764 21 6 6.4292 -5.5853 -0.2732 22 6 5.8714 -6.9697 0.0631 23 6 7.1409 -6.4669 0.7549 24 6 4.0639 -1.8995 0.6040 25 8 3.3624 -2.7748 0.1271 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.6768 1.9563 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6053 -1.7199 1.2951 34 1 1.7516 -0.1585 2.1370 35 1 3.7803 1.0113 2.1808 36 1 6.2032 0.8983 2.1170 37 1 7.3326 -1.0451 1.0647 38 1 2.7951 -6.3572 -1.0099 39 1 6.9079 -5.4577 -1.2442 40 1 4.9580 -7.0138 0.6563 41 1 5.9835 -7.7531 -0.6865 42 1 8.0876 -6.9197 0.4602 43 1 7.0634 -6.1799 1.8035 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930616780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:43 Heat of formation + Delta-G solvation = 10.129656 kcal Electronic energy + Delta-G solvation = -26503.931526 eV Core-core repulsion = 22937.562768 eV Total energy + Delta-G solvation = -3566.368757 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.82405 -38.45925 -36.34772 -36.12956 -35.59779 -33.01192 -32.55348 -31.08481 -29.26022 -27.27290 -26.66669 -24.81028 -24.21608 -22.18844 -21.24855 -20.90494 -20.15424 -19.22982 -17.54057 -16.83773 -16.39280 -15.90709 -15.44811 -15.20401 -14.82550 -14.65886 -14.29530 -13.84886 -13.73170 -13.31708 -13.14252 -12.96649 -12.67979 -12.31349 -12.04260 -11.97509 -11.86624 -11.59808 -11.44862 -11.20717 -11.16773 -11.01399 -10.83797 -10.70320 -10.67247 -10.34009 -10.22673 -9.57214 -9.44247 -9.20945 -9.06752 -8.50688 -8.25261 -7.19914 -6.94809 -6.04867 -3.88738 1.23128 2.57828 3.12187 3.24942 3.29659 3.30097 3.90160 4.28221 4.48555 4.74075 4.80473 4.82867 4.90498 5.05806 5.13378 5.20773 5.37847 5.49274 5.52028 5.54732 5.62967 5.72885 5.73824 5.82236 5.91221 6.00854 6.07045 6.13220 6.22273 6.29138 6.30460 6.35902 6.55588 6.57331 6.60402 6.81478 6.98204 7.09026 7.19085 7.47993 7.64071 7.71978 8.32421 8.52416 8.99735 9.33592 9.62200 10.11281 10.98033 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.014484 B = 0.006799 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.762048 B = 4117.212984 C = 5387.951868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.150 4.150 4 C 0.098 3.902 5 N -0.500 5.500 6 C 0.132 3.868 7 C -0.243 4.243 8 C -0.007 4.007 9 C -0.193 4.193 10 C 0.544 3.456 11 O -0.604 6.604 12 N -0.397 5.397 13 C -0.323 4.323 14 H 0.068 0.932 15 C 0.087 3.913 16 N -0.841 5.841 17 Si 0.899 3.101 18 H -0.285 1.285 19 H -0.278 1.278 20 H -0.274 1.274 21 C 0.108 3.892 22 C -0.142 4.142 23 C -0.219 4.219 24 C 0.503 3.497 25 O -0.452 6.452 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.148 0.852 36 H 0.137 0.863 37 H 0.128 0.872 38 H 0.263 0.737 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.653 11.695 6.354 13.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.132 4.132 3 C -0.207 4.207 4 C -0.024 4.024 5 N -0.213 5.213 6 C 0.003 3.997 7 C -0.268 4.268 8 C -0.030 4.030 9 C -0.200 4.200 10 C 0.334 3.666 11 O -0.490 6.490 12 N -0.112 5.112 13 C -0.451 4.451 14 H 0.085 0.915 15 C -0.121 4.121 16 N -0.475 5.475 17 Si 0.727 3.273 18 H -0.211 1.211 19 H -0.204 1.204 20 H -0.200 1.200 21 C 0.003 3.997 22 C -0.180 4.180 23 C -0.258 4.258 24 C 0.300 3.700 25 O -0.324 6.324 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.166 0.834 36 H 0.155 0.845 37 H 0.146 0.854 38 H 0.073 0.927 39 H 0.120 0.880 40 H 0.127 0.873 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.924 11.000 5.437 12.883 hybrid contribution -0.837 -0.133 0.720 1.113 sum -4.761 10.868 6.158 13.367 Atomic orbital electron populations 1.21739 0.94277 1.02290 1.01677 1.21448 0.96242 0.96402 0.99090 1.21927 1.01475 0.95642 1.01679 1.21952 0.78799 1.03451 0.98230 1.45742 1.07814 1.19010 1.48686 1.21781 0.92445 0.91560 0.93894 1.20314 0.92830 1.02109 1.11498 1.21634 1.00112 0.90625 0.90591 1.21068 0.92660 0.98539 1.07770 1.17685 0.83641 0.83194 0.82119 1.90629 1.35220 1.86454 1.36737 1.42500 1.23395 1.01312 1.44024 1.18682 0.92123 1.36621 0.97711 0.91477 1.25174 0.96207 0.96305 0.94454 1.69967 1.32965 1.30774 1.13752 0.86497 0.82135 0.78363 0.80351 1.21066 1.20377 1.19985 1.21186 0.97607 0.85319 0.95579 1.22964 0.96783 0.96096 1.02129 1.23358 0.96097 1.07311 0.99006 1.17115 0.89313 0.81463 0.82087 1.91156 1.63072 1.34433 1.43696 0.92709 0.92361 0.92172 0.89988 0.92494 0.92754 0.92305 0.88233 0.90021 0.83425 0.84529 0.85358 0.92721 0.88020 0.87272 0.90805 0.90474 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.19 37.16 0.34 -1.16 16 2 C -0.11 -1.42 3.12 -90.62 -0.28 -1.70 16 3 C -0.15 -1.52 8.63 37.16 0.32 -1.20 16 4 C 0.10 1.35 4.83 -4.04 -0.02 1.33 16 5 N -0.50 -8.17 2.46 -119.30 -0.29 -8.46 16 6 C 0.13 1.68 8.20 -16.83 -0.14 1.54 16 7 C -0.24 -3.27 9.99 -40.01 -0.40 -3.67 16 8 C -0.01 -0.13 9.84 -38.70 -0.38 -0.51 16 9 C -0.19 -4.39 5.27 -104.50 -0.55 -4.94 16 10 C 0.54 14.66 7.00 -12.73 -0.09 14.57 16 11 O -0.60 -17.36 16.79 5.21 0.09 -17.28 16 12 N -0.40 -10.75 2.69 -109.10 -0.29 -11.04 16 13 C -0.32 -8.70 4.95 -15.00 -0.07 -8.77 16 14 H 0.07 1.83 7.58 -52.49 -0.40 1.43 16 15 C 0.09 2.33 1.93 -17.45 -0.03 2.30 16 16 N -0.84 -23.63 11.52 55.50 0.64 -22.99 16 17 Si 0.90 20.97 29.56 -169.99 -5.03 15.94 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.11 2.75 5.65 -67.94 -0.38 2.37 16 22 C -0.14 -3.29 8.40 -26.70 -0.22 -3.52 16 23 C -0.22 -4.71 10.37 -26.70 -0.28 -4.99 16 24 C 0.50 11.07 6.61 -14.89 -0.10 10.97 16 25 O -0.45 -11.65 11.93 5.02 0.06 -11.59 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.65 6.33 -51.93 -0.33 0.32 16 33 H 0.10 1.66 7.39 -51.93 -0.38 1.27 16 34 H 0.08 0.84 8.00 -51.93 -0.42 0.42 16 35 H 0.15 1.22 7.88 -52.48 -0.41 0.81 16 36 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 37 H 0.13 2.17 8.06 -52.48 -0.42 1.75 16 38 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 39 H 0.10 2.67 7.74 -51.92 -0.40 2.27 16 40 H 0.11 2.74 5.39 -51.93 -0.28 2.46 16 41 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 42 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 LS Contribution 348.27 15.07 5.25 5.25 Total: -1.00 -33.87 348.27 -8.27 -42.15 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -6.41 Total: 5.40 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -2.29 Total: 2.62 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.05 Total: -42.49 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: 0.15 Total: -28.87 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.87 -8.27 -42.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930616780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.277 kcal (2) G-P(sol) polarization free energy of solvation -33.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds