Wall clock time and date at job start Tue Mar 31 2020 08:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47447 * 2 1 4 4 C 1.53001 * 109.46690 * 120.00278 * 2 1 3 5 5 N 1.46500 * 109.46761 * 174.99659 * 4 2 1 6 6 C 1.35458 * 119.47183 * 90.00059 * 5 4 2 7 7 C 1.35773 * 121.24687 * 180.02562 * 6 5 4 8 8 C 1.39446 * 120.13829 * 0.02562 * 7 6 5 9 9 C 1.39401 * 118.95804 * 359.97438 * 8 7 6 10 10 C 1.46971 * 120.59356 * 180.02562 * 9 8 7 11 11 O 1.21680 * 119.99841 * 312.33537 * 10 9 8 12 12 N 1.34772 * 119.99994 * 132.33376 * 10 9 8 13 13 C 1.36892 * 119.99995 * 7.40125 * 12 10 9 14 14 H 1.07995 * 119.99687 * 303.42973 * 13 12 10 15 15 C 1.39024 * 120.00157 * 123.43364 * 13 12 10 16 16 N 1.31389 * 119.99444 * 351.99188 * 15 13 12 17 17 Si 1.86796 * 120.00203 * 171.99240 * 15 13 12 18 18 H 1.48506 * 109.47086 * 179.97438 * 17 15 13 19 19 H 1.48502 * 109.47130 * 299.99988 * 17 15 13 20 20 H 1.48493 * 109.46964 * 59.99864 * 17 15 13 21 21 C 1.46501 * 120.00270 * 187.39761 * 12 10 9 22 22 C 1.52994 * 117.50286 * 182.58244 * 21 12 10 23 23 C 1.52993 * 117.50065 * 113.92115 * 21 12 10 24 24 C 1.34660 * 119.47342 * 270.30784 * 5 4 2 25 25 O 1.21884 * 120.10698 * 359.97438 * 24 5 4 26 26 H 1.08998 * 109.47101 * 300.00407 * 1 2 3 27 27 H 1.09003 * 109.46690 * 59.99631 * 1 2 3 28 28 H 1.08994 * 109.47052 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47045 * 240.00004 * 2 1 3 30 30 H 1.08995 * 109.46934 * 300.00197 * 3 2 1 31 31 H 1.09000 * 109.46569 * 59.99754 * 3 2 1 32 32 H 1.08996 * 109.47034 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47227 * 55.00081 * 4 2 1 34 34 H 1.08995 * 109.47231 * 294.99813 * 4 2 1 35 35 H 1.08010 * 119.37494 * 359.97438 * 6 5 4 36 36 H 1.08000 * 119.92755 * 180.02562 * 7 6 5 37 37 H 1.08005 * 120.52079 * 179.97438 * 8 7 6 38 38 H 0.97009 * 119.99247 * 175.03833 * 16 15 13 39 39 H 1.09011 * 115.54613 * 328.25681 * 21 12 10 40 40 H 1.09004 * 117.49861 * 0.02562 * 22 21 12 41 41 H 1.09006 * 117.49755 * 145.02033 * 22 21 12 42 42 H 1.08999 * 117.50134 * 214.98443 * 23 21 12 43 43 H 1.08998 * 117.49624 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1905 6 6 4.2611 0.1601 1.7216 7 6 5.6171 0.0998 1.6867 8 6 6.2544 -0.9910 1.0963 9 6 5.4780 -2.0105 0.5476 10 6 6.1121 -3.1768 -0.0829 11 8 7.0137 -3.0198 -0.8849 12 7 5.6951 -4.4203 0.2272 13 6 4.5856 -4.5949 1.0098 14 1 4.5399 -4.1440 1.9901 15 6 3.5177 -5.3526 0.5427 16 7 3.5031 -5.7691 -0.7034 17 14 2.1037 -5.7786 1.6865 18 1 1.0987 -6.5878 0.9512 19 1 2.6185 -6.5578 2.8412 20 1 1.4695 -4.5285 2.1764 21 6 6.4292 -5.5853 -0.2732 22 6 5.8714 -6.9697 0.0631 23 6 7.1409 -6.4669 0.7549 24 6 4.0639 -1.8995 0.6040 25 8 3.3624 -2.7748 0.1271 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.6768 1.9563 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6053 -1.7199 1.2951 34 1 1.7516 -0.1585 2.1370 35 1 3.7803 1.0113 2.1808 36 1 6.2032 0.8983 2.1170 37 1 7.3326 -1.0451 1.0647 38 1 2.7951 -6.3572 -1.0099 39 1 6.9079 -5.4577 -1.2442 40 1 4.9580 -7.0138 0.6563 41 1 5.9835 -7.7531 -0.6865 42 1 8.0876 -6.9197 0.4602 43 1 7.0634 -6.1799 1.8035 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930616780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:42 Heat of formation + Delta-G solvation = -11.731755 kcal Electronic energy + Delta-G solvation = -26504.879508 eV Core-core repulsion = 22937.562768 eV Total energy + Delta-G solvation = -3567.316739 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.24593 -40.32438 -37.97024 -37.73966 -36.98083 -34.83599 -34.00364 -33.08151 -30.66827 -28.12432 -27.79078 -26.86482 -25.72084 -23.53934 -23.03018 -22.65513 -21.26287 -21.12049 -19.19167 -18.44868 -17.96837 -17.44288 -16.96216 -16.73904 -16.49503 -16.18514 -15.73194 -15.51437 -15.19805 -14.91384 -14.62091 -14.53024 -13.83462 -13.82538 -13.43179 -13.28332 -13.10349 -13.04138 -12.96590 -12.76320 -12.70518 -12.56492 -12.17577 -12.16965 -12.11694 -11.86767 -11.67264 -11.49137 -11.15685 -10.88603 -10.73337 -10.37696 -10.18961 -9.04154 -8.56991 -8.06882 -5.94997 -0.14269 1.24159 1.36647 1.38807 1.44107 1.78302 2.13260 2.36117 2.89021 3.09047 3.19648 3.43782 3.72932 3.84086 3.89241 4.07058 4.15452 4.18726 4.22474 4.36721 4.39117 4.42675 4.55524 4.59344 4.66645 4.74257 4.80853 4.84332 4.95640 4.99116 5.04280 5.16293 5.21067 5.23851 5.30331 5.39211 5.39788 5.48490 5.56360 5.58035 5.85889 6.32288 6.34888 6.48030 7.30303 7.48790 7.62486 8.12047 8.96897 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.014484 B = 0.006799 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.762048 B = 4117.212984 C = 5387.951868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C -0.144 4.144 4 C 0.094 3.906 5 N -0.495 5.495 6 C 0.163 3.837 7 C -0.246 4.246 8 C 0.027 3.973 9 C -0.276 4.276 10 C 0.527 3.473 11 O -0.645 6.645 12 N -0.409 5.409 13 C -0.315 4.315 14 H 0.058 0.942 15 C 0.056 3.944 16 N -0.879 5.879 17 Si 0.952 3.048 18 H -0.286 1.286 19 H -0.263 1.263 20 H -0.273 1.273 21 C 0.067 3.933 22 C -0.135 4.135 23 C -0.182 4.182 24 C 0.500 3.500 25 O -0.515 6.515 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.030 0.970 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.137 0.863 35 H 0.217 0.783 36 H 0.191 0.809 37 H 0.132 0.868 38 H 0.259 0.741 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.111 0.889 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.454 15.192 9.699 18.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 C -0.201 4.201 4 C -0.027 4.027 5 N -0.205 5.205 6 C 0.033 3.967 7 C -0.269 4.269 8 C 0.003 3.997 9 C -0.283 4.283 10 C 0.319 3.681 11 O -0.536 6.536 12 N -0.124 5.124 13 C -0.443 4.443 14 H 0.075 0.925 15 C -0.149 4.149 16 N -0.514 5.514 17 Si 0.777 3.223 18 H -0.211 1.211 19 H -0.188 1.188 20 H -0.198 1.198 21 C -0.038 4.038 22 C -0.172 4.172 23 C -0.220 4.220 24 C 0.299 3.701 25 O -0.392 6.392 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.154 0.846 35 H 0.233 0.767 36 H 0.208 0.792 37 H 0.150 0.850 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.129 0.871 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.728 14.526 8.828 17.644 hybrid contribution -0.548 -0.949 -0.289 1.133 sum -5.275 13.577 8.540 16.885 Atomic orbital electron populations 1.21715 0.92648 1.01566 1.03589 1.21397 0.97599 0.97673 0.96291 1.21900 1.00875 0.93505 1.03787 1.22219 0.76846 1.02553 1.01038 1.45730 1.09436 1.18274 1.47033 1.22904 0.92476 0.91072 0.90216 1.20878 0.93619 1.01617 1.10763 1.22016 1.00349 0.89977 0.87321 1.20795 0.93790 0.99645 1.14116 1.18503 0.83311 0.84512 0.81793 1.90545 1.37209 1.87280 1.38519 1.42732 1.23753 1.01923 1.44022 1.18570 0.92507 1.36144 0.97035 0.92477 1.25741 0.97771 0.96021 0.95406 1.70100 1.33778 1.32025 1.15531 0.85673 0.79480 0.78096 0.79056 1.21102 1.18836 1.19848 1.21272 1.00001 0.86255 0.96285 1.22862 0.96941 0.95049 1.02376 1.23363 0.96704 1.04050 0.97898 1.17063 0.88933 0.82218 0.81894 1.91105 1.64015 1.37265 1.46862 0.89552 0.91621 0.94297 0.95147 0.92181 0.88964 0.93084 0.91977 0.84564 0.76692 0.79216 0.85028 0.93167 0.90386 0.89108 0.89301 0.87127 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.19 71.98 0.66 -1.97 16 2 C -0.11 -2.60 3.12 -10.79 -0.03 -2.63 16 3 C -0.14 -2.28 8.63 71.98 0.62 -1.66 16 4 C 0.09 2.38 4.83 86.38 0.42 2.80 16 5 N -0.49 -15.17 2.46 -649.57 -1.60 -16.77 16 6 C 0.16 3.24 8.20 83.56 0.69 3.92 16 7 C -0.25 -5.40 9.99 21.99 0.22 -5.18 16 8 C 0.03 0.93 9.84 22.84 0.22 1.15 16 9 C -0.28 -13.06 5.27 -19.79 -0.10 -13.16 16 10 C 0.53 30.34 7.00 86.53 0.61 30.95 16 11 O -0.65 -39.86 16.79 -4.28 -0.07 -39.93 16 12 N -0.41 -23.58 2.69 -617.30 -1.66 -25.24 16 13 C -0.31 -17.80 4.95 84.09 0.42 -17.39 16 14 H 0.06 3.27 7.58 -2.91 -0.02 3.24 16 15 C 0.06 3.11 1.93 84.95 0.16 3.28 16 16 N -0.88 -52.37 11.52 21.68 0.25 -52.12 16 17 Si 0.95 44.45 29.56 68.60 2.03 46.48 16 18 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 19 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 21 C 0.07 3.59 5.65 44.99 0.25 3.85 16 22 C -0.13 -6.43 8.40 30.61 0.26 -6.18 16 23 C -0.18 -7.87 10.37 30.61 0.32 -7.55 16 24 C 0.50 22.68 6.61 85.18 0.56 23.24 16 25 O -0.52 -28.36 11.93 -4.94 -0.06 -28.42 16 26 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.89 6.33 -2.39 -0.02 0.87 16 33 H 0.06 2.09 7.39 -2.38 -0.02 2.07 16 34 H 0.14 1.97 8.00 -2.39 -0.02 1.95 16 35 H 0.22 1.52 7.88 -2.91 -0.02 1.50 16 36 H 0.19 2.27 8.06 -2.91 -0.02 2.24 16 37 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 38 H 0.26 14.80 8.32 -92.70 -0.77 14.03 16 39 H 0.08 4.45 7.74 -2.38 -0.02 4.43 16 40 H 0.09 4.71 5.39 -2.39 -0.01 4.70 16 41 H 0.09 3.88 8.14 -2.38 -0.02 3.86 16 42 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 43 H 0.08 3.69 8.14 -2.39 -0.02 3.67 16 Total: -1.00 -86.12 348.27 5.16 -80.97 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 1.00 Total: 21.58 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 5.27 Total: 13.46 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -3.01 Total: -94.13 kcal Atomic # 8 Polarization: -68.22 SS G_CDS: -0.13 Total: -68.35 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -86.12 5.16 -80.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930616780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.236 kcal (2) G-P(sol) polarization free energy of solvation -86.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds