Wall clock time and date at job start Tue Mar 31 2020 07:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 119.99894 * 2 1 4 4 C 1.52998 * 109.47456 * 125.00161 * 3 2 1 5 5 C 1.52995 * 109.47628 * 180.02562 * 4 3 2 6 6 C 1.52990 * 109.47336 * 179.97438 * 5 4 3 7 7 N 1.46502 * 109.46969 * 179.97438 * 6 5 4 8 8 C 1.34781 * 119.99688 * 180.02562 * 7 6 5 9 9 O 1.21585 * 120.00226 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99858 * 180.02562 * 8 7 6 11 11 C 1.40022 * 120.00176 * 175.49455 * 10 8 7 12 12 C 1.38908 * 120.00352 * 215.12379 * 11 10 8 13 13 C 1.38003 * 120.00179 * 180.02562 * 12 11 10 14 14 C 1.38899 * 119.99996 * 0.02562 * 13 12 11 15 15 O 1.35783 * 119.99801 * 179.97438 * 14 13 12 16 16 C 1.34820 * 117.00252 * 5.33726 * 15 14 13 17 17 H 1.08001 * 119.99593 * 354.96888 * 16 15 14 18 18 C 1.38634 * 120.00020 * 174.96470 * 16 15 14 19 19 N 1.31572 * 119.99774 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99661 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47012 * 90.00521 * 20 18 16 22 22 H 1.48498 * 109.46951 * 210.00132 * 20 18 16 23 23 H 1.48501 * 109.47460 * 330.00194 * 20 18 16 24 24 C 1.38902 * 120.00661 * 0.26478 * 14 13 12 25 25 C 1.38008 * 119.99473 * 359.45951 * 24 14 13 26 26 H 1.08006 * 120.00198 * 359.97438 * 1 2 3 27 27 H 1.08003 * 119.99660 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.00339 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46693 * 4.99923 * 3 2 1 30 30 H 1.09000 * 109.47187 * 245.00426 * 3 2 1 31 31 H 1.08996 * 109.47011 * 59.99563 * 4 3 2 32 32 H 1.09009 * 109.46946 * 300.00097 * 4 3 2 33 33 H 1.09002 * 109.46622 * 59.99700 * 5 4 3 34 34 H 1.09000 * 109.47086 * 300.00309 * 5 4 3 35 35 H 1.09002 * 109.47238 * 60.00410 * 6 5 4 36 36 H 1.09000 * 109.47557 * 300.00353 * 6 5 4 37 37 H 0.96993 * 120.00341 * 0.02562 * 7 6 5 38 38 H 0.96997 * 119.99675 * 355.48546 * 10 8 7 39 39 H 1.07998 * 119.99489 * 359.97438 * 12 11 10 40 40 H 1.08004 * 120.00410 * 179.97438 * 13 12 11 41 41 H 0.97004 * 119.99768 * 179.97438 * 19 18 16 42 42 H 1.07993 * 120.00563 * 179.70790 * 24 14 13 43 43 H 1.08001 * 120.00490 * 180.27632 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0351 1.3332 1.1816 5 6 3.7996 2.6585 1.1820 6 6 4.7706 2.6867 2.3639 7 7 5.5031 3.9555 2.3638 8 6 6.4198 4.2043 3.3200 9 8 6.6393 3.3757 4.1822 10 7 7.0934 5.3718 3.3203 11 6 7.9763 5.6704 4.3651 12 6 8.1073 6.9794 4.8111 13 6 8.9780 7.2738 5.8406 14 6 9.7238 6.2613 6.4304 15 8 10.5808 6.5510 7.4430 16 6 10.5796 7.8187 7.9020 17 1 9.9766 8.5695 7.4131 18 6 11.3525 8.1584 9.0017 19 7 12.0874 7.2437 9.5970 20 14 11.3513 9.9149 9.6372 21 1 10.2801 10.0729 10.6534 22 1 12.6675 10.2189 10.2542 23 1 11.1057 10.8493 8.5095 24 6 9.5974 4.9532 5.9805 25 6 8.7225 4.6579 4.9549 26 1 -0.5401 0.9353 0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8500 -0.9352 0.0004 29 1 1.3585 2.1316 0.0896 30 1 2.6212 1.4027 -0.9314 31 1 3.7399 0.5067 1.0920 32 1 2.4772 1.2357 2.1130 33 1 3.0943 3.4847 1.2718 34 1 4.3573 2.7565 0.2506 35 1 5.4759 1.8605 2.2745 36 1 4.2126 2.5889 3.2951 37 1 5.3283 4.6164 1.6758 38 1 6.9665 6.0050 2.5966 39 1 7.5284 7.7669 4.3517 40 1 9.0802 8.2916 6.1872 41 1 12.6285 7.4815 10.3663 42 1 10.1807 4.1667 6.4359 43 1 8.6208 3.6402 4.6079 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116631850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:42 Heat of formation + Delta-G solvation = -21.851599 kcal Electronic energy + Delta-G solvation = -22853.435293 eV Core-core repulsion = 19285.679725 eV Total energy + Delta-G solvation = -3567.755569 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.27903 -38.76153 -37.26924 -36.48183 -35.01796 -33.93115 -32.55633 -32.07734 -30.15610 -28.79343 -27.35896 -25.31194 -23.96118 -22.21413 -21.73215 -21.53846 -20.41419 -20.17302 -18.44368 -17.74294 -17.31649 -16.52976 -16.37220 -15.63365 -15.23026 -14.95421 -14.52131 -14.41458 -14.26203 -13.98431 -13.67358 -13.51007 -13.28943 -12.85153 -12.77132 -12.51571 -12.35737 -11.89027 -11.77137 -11.56316 -11.51585 -11.45391 -11.24867 -11.03874 -10.97960 -10.70783 -10.43910 -9.91543 -9.74997 -9.59251 -9.20402 -9.14057 -8.65064 -8.14702 -6.86405 -6.40354 -3.98475 1.85155 2.21239 2.29397 2.74750 3.14602 3.15959 3.20659 3.37404 4.00191 4.20583 4.36084 4.49719 4.53408 4.63661 4.73260 4.96722 5.01534 5.13303 5.14173 5.32923 5.36206 5.39063 5.44106 5.53400 5.59811 5.67911 5.83126 5.83807 5.88859 6.19056 6.20282 6.25772 6.31099 6.33728 6.39691 6.73663 6.89677 6.97239 7.17222 7.27609 7.31116 7.48139 7.85730 8.04059 8.09269 8.71863 9.05071 9.76417 10.77775 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.047900 B = 0.001819 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.410817 B =15388.238522 C =15566.428695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.154 4.154 3 C -0.095 4.095 4 C -0.113 4.113 5 C -0.131 4.131 6 C 0.138 3.862 7 N -0.750 5.750 8 C 0.698 3.302 9 O -0.576 6.576 10 N -0.676 5.676 11 C 0.053 3.947 12 C -0.092 4.092 13 C -0.220 4.220 14 C 0.146 3.854 15 O -0.178 6.178 16 C -0.391 4.391 17 H 0.091 0.909 18 C 0.038 3.962 19 N -0.863 5.863 20 Si 0.941 3.059 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.178 4.178 25 C -0.067 4.067 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.394 0.606 38 H 0.397 0.603 39 H 0.109 0.891 40 H 0.131 0.869 41 H 0.269 0.731 42 H 0.120 0.880 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.481 -7.142 -20.043 28.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.172 4.172 3 C -0.132 4.132 4 C -0.151 4.151 5 C -0.169 4.169 6 C 0.014 3.986 7 N -0.407 5.407 8 C 0.398 3.602 9 O -0.452 6.452 10 N -0.323 5.323 11 C -0.040 4.040 12 C -0.113 4.113 13 C -0.239 4.239 14 C 0.092 3.908 15 O -0.082 6.082 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.498 5.498 20 Si 0.766 3.234 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.193 1.193 24 C -0.198 4.198 25 C -0.088 4.088 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.227 0.773 38 H 0.231 0.769 39 H 0.127 0.873 40 H 0.149 0.851 41 H 0.079 0.921 42 H 0.138 0.862 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.973 -8.082 -18.914 27.315 hybrid contribution -0.297 1.563 -0.397 1.639 sum -18.270 -6.519 -19.311 27.372 Atomic orbital electron populations 1.23872 0.96030 1.01848 1.01617 1.22991 0.96059 0.98629 0.99497 1.20776 0.98189 0.95396 0.98824 1.21442 0.97890 0.97073 0.98672 1.21812 0.98156 0.98640 0.98285 1.21181 0.93758 0.85126 0.98552 1.45109 1.42944 1.20995 1.31628 1.15979 0.79261 0.82809 0.82104 1.90930 1.68988 1.46432 1.38865 1.42301 1.44692 1.19518 1.25777 1.17050 0.97444 0.93991 0.95471 1.20449 0.99480 0.94215 0.97161 1.20948 1.02349 1.00146 1.00506 1.19415 0.89336 0.92946 0.89127 1.83994 1.50268 1.31166 1.42760 1.21307 1.28911 0.83538 1.13006 0.89122 1.25276 0.95839 0.99932 0.95513 1.70051 1.25925 1.33384 1.20427 0.85720 0.78052 0.80468 0.79209 1.19936 1.20309 1.19254 1.20156 1.03844 0.94418 1.01388 1.20780 0.93344 0.98784 0.95844 0.88634 0.88585 0.87374 0.91472 0.90931 0.91323 0.91362 0.91262 0.91227 0.91602 0.91588 0.77296 0.76904 0.87268 0.85147 0.92081 0.86164 0.85173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.08 14.32 29.02 0.42 -0.67 16 2 C -0.15 -0.87 9.52 -36.02 -0.34 -1.21 16 3 C -0.09 -0.48 5.66 -27.88 -0.16 -0.64 16 4 C -0.11 -0.62 5.20 -26.73 -0.14 -0.76 16 5 C -0.13 -0.73 5.33 -26.74 -0.14 -0.88 16 6 C 0.14 1.23 5.67 -4.05 -0.02 1.21 16 7 N -0.75 -7.46 5.56 -65.23 -0.36 -7.82 16 8 C 0.70 10.36 8.41 -86.91 -0.73 9.63 16 9 O -0.58 -11.13 13.78 5.29 0.07 -11.06 16 10 N -0.68 -9.51 5.34 -14.18 -0.08 -9.58 16 11 C 0.05 0.98 6.30 -83.62 -0.53 0.45 16 12 C -0.09 -1.69 9.96 -39.42 -0.39 -2.09 16 13 C -0.22 -4.79 9.16 -39.42 -0.36 -5.15 16 14 C 0.15 3.61 6.65 -39.09 -0.26 3.35 16 15 O -0.18 -5.18 9.76 -0.03 0.00 -5.18 16 16 C -0.39 -11.03 9.48 30.88 0.29 -10.74 16 17 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.60 13.67 55.48 0.76 -24.84 16 20 Si 0.94 20.65 29.55 -169.99 -5.02 15.62 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 C -0.18 -4.03 9.99 -39.42 -0.39 -4.43 16 25 C -0.07 -1.38 8.69 -39.41 -0.34 -1.72 16 26 H 0.10 0.48 7.84 -52.48 -0.41 0.07 16 27 H 0.10 0.45 8.06 -52.48 -0.42 0.03 16 28 H 0.11 0.56 8.06 -52.49 -0.42 0.13 16 29 H 0.07 0.33 7.79 -51.93 -0.40 -0.08 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.39 2.60 8.49 -40.82 -0.35 2.25 16 38 H 0.40 3.99 8.84 -40.82 -0.36 3.62 16 39 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 40 H 0.13 2.80 5.63 -52.48 -0.30 2.51 16 41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 43 H 0.13 2.64 6.23 -52.49 -0.33 2.32 16 LS Contribution 366.36 15.07 5.52 5.52 Total: -1.00 -34.23 366.36 -8.51 -42.74 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.20 Total: 7.26 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -3.20 Total: -12.66 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.32 Total: -42.24 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.07 Total: -16.25 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.23 -8.51 -42.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116631850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.887 kcal (2) G-P(sol) polarization free energy of solvation -34.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds